Wall clock time and date at job start Tue Mar 31 2020 07:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47655 * 2 1 4 4 C 1.50698 * 109.47179 * 120.00380 * 2 1 3 5 5 C 1.38235 * 119.61561 * 273.93268 * 4 2 1 6 6 C 1.38634 * 119.15573 * 179.71309 * 5 4 2 7 7 C 1.38664 * 118.42387 * 0.54829 * 6 5 4 8 8 C 1.38185 * 119.16297 * 359.73409 * 7 6 5 9 9 N 1.31859 * 119.62438 * 94.20484 * 4 2 1 10 10 N 1.46902 * 109.47035 * 239.99953 * 2 1 3 11 11 C 1.47898 * 111.00066 * 62.13608 * 10 2 1 12 12 C 1.53989 * 107.06112 * 145.84230 * 11 10 2 13 13 C 1.54597 * 105.22381 * 358.73146 * 12 11 10 14 14 H 1.08995 * 110.72661 * 96.45039 * 13 12 11 15 15 O 1.42908 * 110.71992 * 219.73167 * 13 12 11 16 16 C 1.42898 * 113.99717 * 268.54165 * 15 13 12 17 17 C 1.53002 * 109.46795 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47381 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99589 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00385 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99995 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46912 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47459 * 119.99859 * 22 20 18 25 25 H 1.48501 * 109.47321 * 240.00458 * 22 20 18 26 26 C 1.48532 * 111.00211 * 179.53349 * 10 2 1 27 27 H 1.09002 * 109.46726 * 299.99582 * 1 2 3 28 28 H 1.08997 * 109.46999 * 59.99681 * 1 2 3 29 29 H 1.09000 * 109.47145 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.42111 * 359.97438 * 5 4 2 31 31 H 1.08007 * 120.78241 * 180.25769 * 6 5 4 32 32 H 1.07997 * 120.41769 * 179.71175 * 7 6 5 33 33 H 1.08006 * 119.61738 * 180.02562 * 8 7 6 34 34 H 1.09006 * 109.91515 * 26.49629 * 11 10 2 35 35 H 1.08995 * 110.08412 * 265.29187 * 11 10 2 36 36 H 1.08999 * 110.30864 * 117.69001 * 12 11 10 37 37 H 1.08995 * 110.31581 * 239.76464 * 12 11 10 38 38 H 1.08997 * 109.47413 * 300.00320 * 16 15 13 39 39 H 1.08995 * 109.47179 * 60.00797 * 16 15 13 40 40 H 1.08997 * 109.47272 * 300.00247 * 17 16 15 41 41 H 1.09007 * 109.47067 * 60.00470 * 17 16 15 42 42 H 0.96997 * 119.99906 * 179.97438 * 21 20 18 43 43 H 1.08993 * 110.66770 * 318.71732 * 26 10 2 44 44 H 1.09000 * 110.66807 * 81.67726 * 26 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1823 -0.0080 2.4115 6 6 2.6395 -0.6724 3.5391 7 6 2.9409 -2.0218 3.4333 8 6 2.7715 -2.6563 2.2175 9 7 2.3288 -1.9937 1.1667 10 7 2.0196 -0.6925 -1.1994 11 6 1.5879 0.0072 -2.4288 12 6 2.7164 -0.1591 -3.4633 13 6 3.8188 -0.9626 -2.7359 14 1 3.7387 -2.0246 -2.9677 15 8 5.1147 -0.4655 -3.0762 16 6 5.7113 -1.1185 -4.1985 17 6 7.0882 -0.5093 -4.4703 18 6 7.7178 -1.1982 -5.6535 19 1 7.1885 -1.9911 -6.1612 20 6 8.9689 -0.8158 -6.0886 21 7 9.6132 0.1500 -5.4707 22 14 9.7490 -1.6694 -7.5557 23 1 8.8258 -2.7130 -8.0695 24 1 10.0135 -0.6733 -8.6249 25 1 11.0273 -2.3001 -7.1394 26 6 3.5044 -0.7026 -1.2395 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9424 1.0440 2.4563 31 1 2.7624 -0.1503 4.4765 32 1 3.3038 -2.5698 4.2902 33 1 3.0036 -3.7072 2.1269 34 1 1.4303 1.0650 -2.2181 35 1 0.6677 -0.4367 -2.8086 36 1 2.3558 -0.7116 -4.3310 37 1 3.0973 0.8157 -3.7678 38 1 5.8206 -2.1817 -3.9845 39 1 5.0764 -0.9876 -5.0747 40 1 6.9793 0.5540 -4.6841 41 1 7.7230 -0.6405 -3.5939 42 1 10.4936 0.4188 -5.7766 43 1 3.9042 0.2615 -0.9255 44 1 3.9006 -1.5036 -0.6154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205648821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:39 Heat of formation + Delta-G solvation = -8.598117 kcal Electronic energy + Delta-G solvation = -22720.432468 eV Core-core repulsion = 19444.622327 eV Total energy + Delta-G solvation = -3275.810141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 12.60 seconds Orbital eigenvalues (eV) -40.61389 -38.99444 -36.80603 -33.96057 -33.02405 -32.56441 -30.58605 -29.73877 -29.23129 -27.41065 -24.52510 -24.43703 -23.66612 -22.00251 -20.90779 -20.61402 -20.10376 -17.26833 -16.90948 -16.50396 -16.07044 -15.73669 -15.41154 -14.84205 -14.48498 -14.44335 -14.19532 -14.03000 -13.70650 -13.36498 -13.11036 -12.94680 -12.46471 -12.35109 -12.16466 -11.96213 -11.65623 -11.57247 -11.33596 -11.20155 -10.99058 -10.91437 -10.52012 -10.22170 -10.15938 -10.00622 -9.47101 -9.44109 -9.16833 -9.16457 -8.81832 -8.39806 -8.34187 -6.01747 -4.05089 0.90296 1.12058 3.31165 3.38063 3.42336 3.59773 3.71562 4.03360 4.32519 4.47885 4.65584 4.66712 4.76707 4.86481 4.88828 4.96592 5.03121 5.13364 5.18923 5.31974 5.34401 5.39729 5.46566 5.50049 5.62230 5.75046 5.78682 5.87858 5.91832 5.96479 6.03402 6.07122 6.16484 6.23987 6.36619 6.39759 6.49270 6.85682 6.92269 6.98592 7.59060 7.81221 7.86985 7.92809 8.15092 8.38408 9.01779 9.58595 11.10016 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.002893 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.387752 B = 9676.098333 C =10408.251485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.123 3.877 3 H 0.058 0.942 4 C 0.137 3.863 5 C -0.171 4.171 6 C -0.076 4.076 7 C -0.179 4.179 8 C 0.099 3.901 9 N -0.450 5.450 10 N -0.492 5.492 11 C 0.039 3.961 12 C -0.156 4.156 13 C 0.086 3.914 14 H 0.071 0.929 15 O -0.383 6.383 16 C 0.070 3.930 17 C 0.025 3.975 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.047 3.953 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.048 0.952 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.431 -0.637 17.133 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 H 0.076 0.924 4 C -0.001 4.001 5 C -0.192 4.192 6 C -0.102 4.102 7 C -0.199 4.199 8 C -0.059 4.059 9 N -0.158 5.158 10 N -0.217 5.217 11 C -0.088 4.088 12 C -0.194 4.194 13 C 0.027 3.973 14 H 0.089 0.911 15 O -0.302 6.302 16 C -0.005 4.005 17 C -0.012 4.012 18 C -0.560 4.560 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.531 5.531 22 Si 0.724 3.276 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.080 4.080 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.489 -1.353 16.445 25.537 hybrid contribution 0.871 0.691 -0.033 1.112 sum -18.619 -0.662 16.413 24.829 Atomic orbital electron populations 1.21800 0.92686 1.03196 1.01912 1.20698 0.96112 0.94225 0.87609 0.92382 1.21106 0.94691 0.90410 0.93908 1.21901 1.02207 1.01331 0.93717 1.21521 0.95629 0.94542 0.98511 1.22166 1.02317 0.95721 0.99708 1.22891 0.94524 1.00297 0.88163 1.67621 1.09340 1.08237 1.30633 1.64695 1.08511 1.48238 1.00235 1.22813 0.98771 0.96762 0.90479 1.22952 0.95999 1.02061 0.98426 1.22812 0.84037 0.97190 0.93259 0.91129 1.87935 1.29638 1.61667 1.50948 1.22901 0.96610 0.95422 0.85616 1.19075 0.88397 0.96800 0.96947 1.21099 1.01897 1.19216 1.13808 0.92484 1.25001 0.97112 0.95134 0.97107 1.69996 1.13768 1.28683 1.40609 0.86473 0.79247 0.79476 0.82428 1.19669 1.20934 1.20914 1.23149 0.87140 1.01436 0.96325 0.92189 0.91713 0.91280 0.85052 0.84972 0.84978 0.82745 0.93811 0.90297 0.90980 0.90348 0.94609 0.94691 0.95836 0.95800 0.92936 0.93383 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.11 37.16 0.34 -0.88 16 2 C 0.12 1.35 2.01 -68.87 -0.14 1.21 16 3 H 0.06 0.61 7.96 -51.93 -0.41 0.19 16 4 C 0.14 1.56 5.16 -82.58 -0.43 1.14 16 5 C -0.17 -1.59 9.76 -39.44 -0.38 -1.97 16 6 C -0.08 -0.62 10.18 -39.28 -0.40 -1.02 16 7 C -0.18 -1.49 10.11 -39.44 -0.40 -1.89 16 8 C 0.10 1.00 11.18 -17.55 -0.20 0.81 16 9 N -0.45 -5.66 8.54 -9.47 -0.08 -5.74 16 10 N -0.49 -6.41 4.76 -223.79 -1.07 -7.47 16 11 C 0.04 0.47 5.45 -2.76 -0.02 0.46 16 12 C -0.16 -2.22 6.69 -25.38 -0.17 -2.39 16 13 C 0.09 1.45 3.52 -24.78 -0.09 1.37 16 14 H 0.07 1.19 7.89 -51.93 -0.41 0.78 16 15 O -0.38 -8.09 10.09 -35.23 -0.36 -8.45 16 16 C 0.07 1.59 5.75 37.16 0.21 1.81 16 17 C 0.02 0.69 5.34 -27.88 -0.15 0.54 16 18 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 22 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.05 0.72 5.41 -1.81 -0.01 0.71 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.52 7.19 -51.93 -0.37 0.14 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.04 0.47 7.60 -51.93 -0.39 0.08 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 38 H 0.04 0.79 8.11 -51.93 -0.42 0.36 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.02 0.70 8.14 -51.92 -0.42 0.27 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.05 0.77 7.99 -51.93 -0.42 0.35 16 44 H 0.09 1.45 7.08 -51.93 -0.37 1.08 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -32.68 358.93 -10.02 -42.70 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -7.41 Total: -2.73 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.23 Total: -13.98 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: -0.41 Total: -39.77 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.36 Total: -8.45 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.68 -10.02 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.097 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.60 seconds