Wall clock time and date at job start Tue Mar 31 2020 07:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47655 * 2 1 4 4 C 1.50698 * 109.47179 * 120.00380 * 2 1 3 5 5 C 1.38235 * 119.61561 * 273.93268 * 4 2 1 6 6 C 1.38634 * 119.15573 * 179.71309 * 5 4 2 7 7 C 1.38664 * 118.42387 * 0.54829 * 6 5 4 8 8 C 1.38185 * 119.16297 * 359.73409 * 7 6 5 9 9 N 1.31859 * 119.62438 * 94.20484 * 4 2 1 10 10 N 1.46902 * 109.47035 * 239.99953 * 2 1 3 11 11 C 1.47898 * 111.00066 * 62.13608 * 10 2 1 12 12 C 1.53989 * 107.06112 * 145.84230 * 11 10 2 13 13 C 1.54597 * 105.22381 * 358.73146 * 12 11 10 14 14 H 1.08995 * 110.72661 * 96.45039 * 13 12 11 15 15 O 1.42908 * 110.71992 * 219.73167 * 13 12 11 16 16 C 1.42898 * 113.99717 * 268.54165 * 15 13 12 17 17 C 1.53002 * 109.46795 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47381 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99589 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00385 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99995 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46912 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47459 * 119.99859 * 22 20 18 25 25 H 1.48501 * 109.47321 * 240.00458 * 22 20 18 26 26 C 1.48532 * 111.00211 * 179.53349 * 10 2 1 27 27 H 1.09002 * 109.46726 * 299.99582 * 1 2 3 28 28 H 1.08997 * 109.46999 * 59.99681 * 1 2 3 29 29 H 1.09000 * 109.47145 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.42111 * 359.97438 * 5 4 2 31 31 H 1.08007 * 120.78241 * 180.25769 * 6 5 4 32 32 H 1.07997 * 120.41769 * 179.71175 * 7 6 5 33 33 H 1.08006 * 119.61738 * 180.02562 * 8 7 6 34 34 H 1.09006 * 109.91515 * 26.49629 * 11 10 2 35 35 H 1.08995 * 110.08412 * 265.29187 * 11 10 2 36 36 H 1.08999 * 110.30864 * 117.69001 * 12 11 10 37 37 H 1.08995 * 110.31581 * 239.76464 * 12 11 10 38 38 H 1.08997 * 109.47413 * 300.00320 * 16 15 13 39 39 H 1.08995 * 109.47179 * 60.00797 * 16 15 13 40 40 H 1.08997 * 109.47272 * 300.00247 * 17 16 15 41 41 H 1.09007 * 109.47067 * 60.00470 * 17 16 15 42 42 H 0.96997 * 119.99906 * 179.97438 * 21 20 18 43 43 H 1.08993 * 110.66770 * 318.71732 * 26 10 2 44 44 H 1.09000 * 110.66807 * 81.67726 * 26 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1823 -0.0080 2.4115 6 6 2.6395 -0.6724 3.5391 7 6 2.9409 -2.0218 3.4333 8 6 2.7715 -2.6563 2.2175 9 7 2.3288 -1.9937 1.1667 10 7 2.0196 -0.6925 -1.1994 11 6 1.5879 0.0072 -2.4288 12 6 2.7164 -0.1591 -3.4633 13 6 3.8188 -0.9626 -2.7359 14 1 3.7387 -2.0246 -2.9677 15 8 5.1147 -0.4655 -3.0762 16 6 5.7113 -1.1185 -4.1985 17 6 7.0882 -0.5093 -4.4703 18 6 7.7178 -1.1982 -5.6535 19 1 7.1885 -1.9911 -6.1612 20 6 8.9689 -0.8158 -6.0886 21 7 9.6132 0.1500 -5.4707 22 14 9.7490 -1.6694 -7.5557 23 1 8.8258 -2.7130 -8.0695 24 1 10.0135 -0.6733 -8.6249 25 1 11.0273 -2.3001 -7.1394 26 6 3.5044 -0.7026 -1.2395 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9424 1.0440 2.4563 31 1 2.7624 -0.1503 4.4765 32 1 3.3038 -2.5698 4.2902 33 1 3.0036 -3.7072 2.1269 34 1 1.4303 1.0650 -2.2181 35 1 0.6677 -0.4367 -2.8086 36 1 2.3558 -0.7116 -4.3310 37 1 3.0973 0.8157 -3.7678 38 1 5.8206 -2.1817 -3.9845 39 1 5.0764 -0.9876 -5.0747 40 1 6.9793 0.5540 -4.6841 41 1 7.7230 -0.6405 -3.5939 42 1 10.4936 0.4188 -5.7766 43 1 3.9042 0.2615 -0.9255 44 1 3.9006 -1.5036 -0.6154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205648821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:32 Heat of formation + Delta-G solvation = -29.380147 kcal Electronic energy + Delta-G solvation = -22721.333645 eV Core-core repulsion = 19444.622327 eV Total energy + Delta-G solvation = -3276.711317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -41.40486 -40.13450 -38.24198 -35.50164 -34.64419 -33.26958 -32.09050 -31.07848 -30.26827 -28.62767 -26.53659 -25.26662 -24.37395 -23.10675 -22.73504 -21.87718 -21.10312 -18.75602 -18.05320 -17.71719 -17.33455 -16.68208 -16.50688 -16.47222 -16.14674 -15.70464 -15.21403 -15.03568 -14.75892 -14.41650 -14.26580 -14.07938 -13.93533 -13.68491 -13.33078 -13.12049 -12.89663 -12.81835 -12.61771 -12.50409 -12.38223 -12.35745 -12.08455 -11.97796 -11.55115 -11.46087 -11.33498 -10.73499 -10.66320 -10.38268 -10.19982 -9.87800 -9.40098 -8.25175 -6.38508 0.19966 0.44472 1.40327 1.41581 1.55282 2.34728 2.56542 2.90165 3.08632 3.15873 3.31483 3.61691 3.74080 3.86244 4.04450 4.08900 4.18498 4.22197 4.27421 4.30396 4.34071 4.40669 4.42611 4.50347 4.62859 4.65896 4.78667 4.82875 4.86157 4.87419 4.93056 4.96904 5.07899 5.11061 5.22013 5.28176 5.30870 5.35455 5.54897 5.68988 5.77474 5.87633 6.03465 6.10605 6.43877 6.77229 7.19461 7.31405 8.88245 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.002893 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.387752 B = 9676.098333 C =10408.251485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.120 3.880 3 H 0.063 0.937 4 C 0.113 3.887 5 C -0.176 4.176 6 C -0.078 4.078 7 C -0.176 4.176 8 C 0.077 3.923 9 N -0.486 5.486 10 N -0.496 5.496 11 C 0.045 3.955 12 C -0.152 4.152 13 C 0.076 3.924 14 H 0.070 0.930 15 O -0.404 6.404 16 C 0.088 3.912 17 C 0.029 3.971 18 C -0.545 4.545 19 H 0.067 0.933 20 C -0.001 4.001 21 N -0.932 5.932 22 Si 0.976 3.024 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.060 3.940 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.152 0.848 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.047 0.953 40 H -0.006 1.006 41 H -0.008 1.008 42 H 0.266 0.734 43 H 0.035 0.965 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.690 -1.017 17.317 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.010 3.990 3 H 0.081 0.919 4 C -0.025 4.025 5 C -0.196 4.196 6 C -0.104 4.104 7 C -0.196 4.196 8 C -0.080 4.080 9 N -0.195 5.195 10 N -0.221 5.221 11 C -0.083 4.083 12 C -0.190 4.190 13 C 0.017 3.983 14 H 0.089 0.911 15 O -0.323 6.323 16 C 0.012 3.988 17 C -0.008 4.008 18 C -0.583 4.583 19 H 0.085 0.915 20 C -0.199 4.199 21 N -0.572 5.572 22 Si 0.799 3.201 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.068 4.068 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.169 0.831 31 H 0.180 0.820 32 H 0.177 0.823 33 H 0.183 0.817 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.013 0.987 41 H 0.010 0.990 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.779 -1.735 16.643 26.679 hybrid contribution 1.243 0.832 0.036 1.496 sum -19.537 -0.903 16.679 25.704 Atomic orbital electron populations 1.21752 0.90982 1.02691 1.03324 1.20844 0.97392 0.94114 0.86617 0.91899 1.21278 0.95870 0.90492 0.94835 1.22173 1.01766 1.02313 0.93386 1.21940 0.94519 0.94606 0.99350 1.22480 1.01199 0.96117 0.99772 1.23214 0.95034 1.01059 0.88686 1.67534 1.10658 1.09185 1.32094 1.64707 1.06504 1.49340 1.01583 1.22846 0.98316 0.97813 0.89297 1.22908 0.95733 1.01039 0.99321 1.23081 0.82767 0.97594 0.94842 0.91148 1.87885 1.32033 1.62049 1.50370 1.22489 0.94374 0.95136 0.86790 1.18934 0.90860 0.95435 0.95597 1.21489 1.02661 1.19734 1.14385 0.91454 1.26062 0.97643 0.95716 1.00439 1.70137 1.14363 1.30200 1.42507 0.85241 0.78260 0.78497 0.78071 1.18220 1.20106 1.20179 1.22920 0.89010 1.00158 0.94748 0.90422 0.90647 0.92652 0.83077 0.82019 0.82321 0.81715 0.92386 0.88409 0.89879 0.91420 0.93943 0.93506 0.98725 0.98955 0.92513 0.94623 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.11 71.98 0.66 -1.40 16 2 C 0.12 2.50 2.01 44.17 0.09 2.59 16 3 H 0.06 1.24 7.96 -2.39 -0.02 1.22 16 4 C 0.11 2.52 5.16 42.55 0.22 2.74 16 5 C -0.18 -3.01 9.76 22.36 0.22 -2.80 16 6 C -0.08 -1.12 10.18 22.47 0.23 -0.89 16 7 C -0.18 -2.66 10.11 22.36 0.23 -2.44 16 8 C 0.08 1.55 11.18 84.67 0.95 2.50 16 9 N -0.49 -12.28 8.54 -183.88 -1.57 -13.85 16 10 N -0.50 -12.62 4.76 -861.93 -4.10 -16.72 16 11 C 0.04 0.99 5.45 86.45 0.47 1.46 16 12 C -0.15 -4.21 6.69 31.47 0.21 -4.00 16 13 C 0.08 2.57 3.52 31.86 0.11 2.68 16 14 H 0.07 2.38 7.89 -2.39 -0.02 2.36 16 15 O -0.40 -17.56 10.09 -148.98 -1.50 -19.06 16 16 C 0.09 4.07 5.75 71.98 0.41 4.49 16 17 C 0.03 1.66 5.34 29.85 0.16 1.82 16 18 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 19 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 20 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 21 N -0.93 -58.21 13.29 21.45 0.28 -57.92 16 22 Si 0.98 44.66 29.54 68.60 2.03 46.69 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 C 0.06 1.87 5.41 86.71 0.47 2.34 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.02 7.19 -2.39 -0.02 1.00 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 31 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 32 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 33 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.06 1.14 7.60 -2.38 -0.02 1.12 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 38 H 0.04 1.89 8.11 -2.39 -0.02 1.87 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 40 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.04 1.17 7.99 -2.39 -0.02 1.16 16 44 H 0.08 2.55 7.08 -2.39 -0.02 2.53 16 Total: -1.00 -72.13 358.93 1.20 -70.93 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.95 Total: 12.18 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 5.12 Total: -22.25 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -5.39 Total: -88.49 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -1.50 Total: -19.06 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -72.13 1.20 -70.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.551 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds