Wall clock time and date at job start Tue Mar 31 2020 07:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46794 * 190.85171 * 3 2 1 5 5 C 1.50702 * 112.84672 * 55.07348 * 4 3 2 6 6 O 1.21280 * 120.00201 * 247.78284 * 5 4 3 7 7 N 1.34781 * 120.00045 * 67.79313 * 5 4 3 8 8 C 1.47019 * 125.64752 * 185.02272 * 7 5 4 9 9 C 1.54339 * 107.26536 * 178.84456 * 8 7 5 10 10 H 1.09001 * 110.66593 * 96.52320 * 9 8 7 11 11 C 1.52996 * 110.84773 * 219.67102 * 9 8 7 12 12 C 1.55153 * 103.01802 * 338.14206 * 9 8 7 13 13 H 1.09003 * 111.00208 * 277.22707 * 12 9 8 14 14 N 1.46499 * 111.00288 * 153.38303 * 12 9 8 15 15 C 1.36929 * 120.00409 * 161.34886 * 14 12 9 16 16 H 1.08003 * 119.99824 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00363 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00119 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00266 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47264 * 89.99697 * 19 17 15 21 21 H 1.48504 * 109.47415 * 210.00125 * 19 17 15 22 22 H 1.48503 * 109.47134 * 330.00124 * 19 17 15 23 23 C 1.47425 * 125.64685 * 5.32332 * 7 5 4 24 24 C 1.53776 * 113.61671 * 283.87670 * 4 3 2 25 25 C 1.53955 * 87.01927 * 220.04954 * 24 4 3 26 26 C 1.53779 * 113.61164 * 186.26481 * 4 3 2 27 27 H 4.44643 * 5.63322 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.47303 * 70.85842 * 3 2 1 29 29 H 1.08998 * 109.47289 * 310.85285 * 3 2 1 30 30 H 1.09001 * 109.88505 * 298.39095 * 8 7 5 31 31 H 1.09003 * 109.88394 * 59.55712 * 8 7 5 32 32 H 1.09010 * 109.46703 * 173.69171 * 11 9 8 33 33 H 1.08995 * 109.47643 * 293.69320 * 11 9 8 34 34 H 1.09000 * 109.47264 * 53.69598 * 11 9 8 35 35 H 0.97009 * 119.99988 * 341.34290 * 14 12 9 36 36 H 0.97005 * 120.00472 * 179.97438 * 18 17 15 37 37 H 1.08993 * 110.37025 * 322.93787 * 23 7 5 38 38 H 1.09002 * 110.36334 * 85.15244 * 23 7 5 39 39 H 1.08998 * 113.61325 * 334.56634 * 24 4 3 40 40 H 1.08995 * 113.61553 * 105.47279 * 24 4 3 41 41 H 1.09003 * 113.54005 * 270.81384 * 25 24 4 42 42 H 1.09001 * 113.67099 * 139.93297 * 25 24 4 43 43 H 1.08997 * 113.61629 * 254.53389 * 26 4 3 44 44 H 1.09004 * 113.61658 * 25.35650 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4177 0.2716 5 6 2.6004 2.0051 1.5436 6 8 1.8304 2.9408 1.4941 7 7 2.9600 1.4908 2.7364 8 6 2.4187 1.8952 4.0421 9 6 3.1016 1.0179 5.1127 10 1 3.9493 1.5411 5.5552 11 6 2.1021 0.6001 6.1930 12 6 3.5802 -0.2148 4.3012 13 1 2.7727 -0.9355 4.1728 14 7 4.7439 -0.8405 4.9340 15 6 5.0862 -2.1278 4.6169 16 1 4.4981 -2.6820 3.9004 17 6 6.1892 -2.7205 5.2161 18 7 6.9062 -2.0450 6.0889 19 14 6.6557 -4.4769 4.7839 20 1 7.5953 -4.4708 3.6339 21 1 7.3090 -5.1177 5.9535 22 1 5.4338 -5.2386 4.4206 23 6 3.9658 0.4339 2.9483 24 6 3.0416 2.3562 -0.9412 25 6 4.4188 2.9136 -0.5375 26 6 4.6811 1.5592 0.1420 27 1 -1.0502 -0.0004 -0.0003 28 1 3.0095 -0.3361 -0.9708 29 1 3.0097 -0.6714 0.7773 30 1 2.6396 2.9467 4.2256 31 1 1.3412 1.7314 4.0636 32 1 2.5770 -0.1067 6.8736 33 1 1.7797 1.4800 6.7497 34 1 1.2374 0.1292 5.7254 35 1 5.2720 -0.3428 5.5778 36 1 7.6768 -2.4592 6.5080 37 1 3.9166 -0.3028 2.1466 38 1 4.9646 0.8667 3.0043 39 1 3.0451 1.8349 -1.8985 40 1 2.2336 3.0829 -0.8568 41 1 4.3627 3.7487 0.1607 42 1 5.0760 3.1118 -1.3842 43 1 5.1947 1.6434 1.0997 44 1 5.1339 0.8188 -0.5175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214831539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:20 Heat of formation + Delta-G solvation = 49.053609 kcal Electronic energy + Delta-G solvation = -24087.857029 eV Core-core repulsion = 20814.546855 eV Total energy + Delta-G solvation = -3273.310174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82931 -38.46441 -36.87985 -34.11507 -33.77608 -32.47867 -30.76113 -29.46166 -27.56185 -26.63387 -25.56906 -24.30533 -23.70602 -21.87416 -20.56464 -19.88120 -18.40284 -18.12006 -17.20060 -16.18738 -16.09906 -15.72775 -15.19651 -14.39339 -14.27123 -14.22921 -13.97392 -13.62415 -13.29718 -13.11610 -12.95428 -12.61899 -12.50764 -12.43508 -11.90610 -11.70046 -11.65957 -11.13251 -11.06963 -11.04015 -10.91374 -10.73839 -10.63216 -10.37931 -10.27899 -10.10252 -9.96588 -9.82074 -9.80157 -9.50858 -9.02931 -8.31191 -7.11781 -5.88567 -3.19334 2.77873 2.89251 2.96081 3.20153 3.36434 3.42757 3.43882 4.24606 4.41083 4.48634 4.60182 4.70039 4.79154 4.88726 5.08397 5.12412 5.21105 5.38143 5.48320 5.56410 5.60366 5.62385 5.63716 5.70430 5.79693 5.83004 5.88938 5.94186 5.98226 6.00686 6.07053 6.16165 6.21386 6.24213 6.29587 6.39341 6.45704 6.54676 6.62503 6.85416 7.59772 7.70927 7.82006 8.28561 8.40193 9.41033 9.94641 10.29825 11.33336 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.005007 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.885449 B = 5590.877597 C = 6186.757156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.002 3.998 4 C -0.097 4.097 5 C 0.555 3.445 6 O -0.548 6.548 7 N -0.609 5.609 8 C 0.117 3.883 9 C -0.113 4.113 10 H 0.084 0.916 11 C -0.134 4.134 12 C 0.177 3.823 13 H 0.064 0.936 14 N -0.710 5.710 15 C -0.248 4.248 16 H 0.072 0.928 17 C -0.007 4.007 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.070 3.930 24 C -0.116 4.116 25 C -0.141 4.141 26 C -0.128 4.128 27 H 0.214 0.786 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 6.821 -10.347 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.182 4.182 3 C -0.034 4.034 4 C -0.100 4.100 5 C 0.343 3.657 6 O -0.426 6.426 7 N -0.342 5.342 8 C -0.006 4.006 9 C -0.133 4.133 10 H 0.102 0.898 11 C -0.192 4.192 12 C 0.064 3.936 13 H 0.082 0.918 14 N -0.350 5.350 15 C -0.379 4.379 16 H 0.090 0.910 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.056 4.056 24 C -0.153 4.153 25 C -0.179 4.179 26 C -0.165 4.165 27 H 0.231 0.769 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.892 7.149 -10.458 14.925 hybrid contribution 0.371 -0.894 0.024 0.968 sum -7.522 6.254 -10.434 14.302 Atomic orbital electron populations 1.24783 0.95855 1.00527 1.01198 1.22887 0.94338 1.00588 1.00368 1.18778 0.85362 0.95499 1.03792 1.21900 0.97828 0.95582 0.94681 1.19430 0.80688 0.82292 0.83252 1.90637 1.36685 1.28473 1.86847 1.48415 1.41166 1.39310 1.05324 1.21962 0.98045 0.98470 0.82095 1.22473 0.98711 0.96975 0.95123 0.89764 1.21665 0.98301 1.00988 0.98226 1.21360 0.91141 0.91755 0.89295 0.91806 1.42286 1.29829 1.13309 1.49586 1.19215 1.08791 0.89467 1.20379 0.91032 1.24744 0.98105 0.98379 0.99108 1.69654 1.19916 1.36790 1.31261 0.86218 0.78258 0.84474 0.77379 1.21585 1.21717 1.20665 1.23656 0.91236 0.88865 1.01794 1.22888 0.98466 0.98222 0.95762 1.22866 0.97167 0.97147 1.00687 1.23084 0.92958 0.98146 1.02316 0.76874 0.88545 0.88316 0.92050 0.91834 0.91319 0.93194 0.92935 0.77843 0.93328 0.90966 0.91082 0.89464 0.90077 0.90203 0.90975 0.90227 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.73 19.25 29.55 0.57 -2.17 16 2 C -0.18 -2.58 12.48 -37.12 -0.46 -3.04 16 3 C 0.00 0.03 5.01 -29.52 -0.15 -0.12 16 4 C -0.10 -1.28 0.32 -154.85 -0.05 -1.33 16 5 C 0.56 9.15 5.74 -10.98 -0.06 9.09 16 6 O -0.55 -10.62 16.30 5.56 0.09 -10.53 16 7 N -0.61 -9.82 3.33 -170.51 -0.57 -10.38 16 8 C 0.12 1.81 6.48 -3.06 -0.02 1.79 16 9 C -0.11 -1.77 3.16 -88.78 -0.28 -2.05 16 10 H 0.08 1.35 7.99 -51.93 -0.42 0.94 16 11 C -0.13 -1.91 9.16 37.16 0.34 -1.57 16 12 C 0.18 3.24 3.14 -65.79 -0.21 3.03 16 13 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 14 N -0.71 -16.16 5.28 -51.36 -0.27 -16.43 16 15 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 16 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 19 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 C 0.07 1.16 5.16 -2.53 -0.01 1.15 16 24 C -0.12 -1.38 7.00 -25.83 -0.18 -1.56 16 25 C -0.14 -1.58 7.81 -25.83 -0.20 -1.78 16 26 C -0.13 -1.48 6.66 -25.92 -0.17 -1.66 16 27 H 0.21 2.08 7.80 -54.08 -0.42 1.66 16 28 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.10 1.29 5.70 -51.93 -0.30 0.99 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.97 7.77 -51.93 -0.40 0.57 16 32 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.39 9.45 7.71 -40.82 -0.31 9.14 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.07 1.16 5.12 -51.93 -0.27 0.89 16 38 H 0.07 1.24 7.37 -51.93 -0.38 0.86 16 39 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 40 H 0.08 1.12 7.35 -51.93 -0.38 0.74 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.03 6.34 -51.93 -0.33 0.70 16 44 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -30.23 356.03 -7.78 -38.01 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.96 Total: 10.51 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.14 Total: -6.98 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.11 Total: -52.57 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.23 -7.78 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214831539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.061 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds