Wall clock time and date at job start Tue Mar 31 2020 07:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46794 * 190.85171 * 3 2 1 5 5 C 1.50702 * 112.84672 * 55.07348 * 4 3 2 6 6 O 1.21280 * 120.00201 * 247.78284 * 5 4 3 7 7 N 1.34781 * 120.00045 * 67.79313 * 5 4 3 8 8 C 1.47019 * 125.64752 * 185.02272 * 7 5 4 9 9 C 1.54339 * 107.26536 * 178.84456 * 8 7 5 10 10 H 1.09001 * 110.66593 * 96.52320 * 9 8 7 11 11 C 1.52996 * 110.84773 * 219.67102 * 9 8 7 12 12 C 1.55153 * 103.01802 * 338.14206 * 9 8 7 13 13 H 1.09003 * 111.00208 * 277.22707 * 12 9 8 14 14 N 1.46499 * 111.00288 * 153.38303 * 12 9 8 15 15 C 1.36929 * 120.00409 * 161.34886 * 14 12 9 16 16 H 1.08003 * 119.99824 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00363 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00119 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00266 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47264 * 89.99697 * 19 17 15 21 21 H 1.48504 * 109.47415 * 210.00125 * 19 17 15 22 22 H 1.48503 * 109.47134 * 330.00124 * 19 17 15 23 23 C 1.47425 * 125.64685 * 5.32332 * 7 5 4 24 24 C 1.53776 * 113.61671 * 283.87670 * 4 3 2 25 25 C 1.53955 * 87.01927 * 220.04954 * 24 4 3 26 26 C 1.53779 * 113.61164 * 186.26481 * 4 3 2 27 27 H 4.44643 * 5.63322 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.47303 * 70.85842 * 3 2 1 29 29 H 1.08998 * 109.47289 * 310.85285 * 3 2 1 30 30 H 1.09001 * 109.88505 * 298.39095 * 8 7 5 31 31 H 1.09003 * 109.88394 * 59.55712 * 8 7 5 32 32 H 1.09010 * 109.46703 * 173.69171 * 11 9 8 33 33 H 1.08995 * 109.47643 * 293.69320 * 11 9 8 34 34 H 1.09000 * 109.47264 * 53.69598 * 11 9 8 35 35 H 0.97009 * 119.99988 * 341.34290 * 14 12 9 36 36 H 0.97005 * 120.00472 * 179.97438 * 18 17 15 37 37 H 1.08993 * 110.37025 * 322.93787 * 23 7 5 38 38 H 1.09002 * 110.36334 * 85.15244 * 23 7 5 39 39 H 1.08998 * 113.61325 * 334.56634 * 24 4 3 40 40 H 1.08995 * 113.61553 * 105.47279 * 24 4 3 41 41 H 1.09003 * 113.54005 * 270.81384 * 25 24 4 42 42 H 1.09001 * 113.67099 * 139.93297 * 25 24 4 43 43 H 1.08997 * 113.61629 * 254.53389 * 26 4 3 44 44 H 1.09004 * 113.61658 * 25.35650 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4177 0.2716 5 6 2.6004 2.0051 1.5436 6 8 1.8304 2.9408 1.4941 7 7 2.9600 1.4908 2.7364 8 6 2.4187 1.8952 4.0421 9 6 3.1016 1.0179 5.1127 10 1 3.9493 1.5411 5.5552 11 6 2.1021 0.6001 6.1930 12 6 3.5802 -0.2148 4.3012 13 1 2.7727 -0.9355 4.1728 14 7 4.7439 -0.8405 4.9340 15 6 5.0862 -2.1278 4.6169 16 1 4.4981 -2.6820 3.9004 17 6 6.1892 -2.7205 5.2161 18 7 6.9062 -2.0450 6.0889 19 14 6.6557 -4.4769 4.7839 20 1 7.5953 -4.4708 3.6339 21 1 7.3090 -5.1177 5.9535 22 1 5.4338 -5.2386 4.4206 23 6 3.9658 0.4339 2.9483 24 6 3.0416 2.3562 -0.9412 25 6 4.4188 2.9136 -0.5375 26 6 4.6811 1.5592 0.1420 27 1 -1.0502 -0.0004 -0.0003 28 1 3.0095 -0.3361 -0.9708 29 1 3.0097 -0.6714 0.7773 30 1 2.6396 2.9467 4.2256 31 1 1.3412 1.7314 4.0636 32 1 2.5770 -0.1067 6.8736 33 1 1.7797 1.4800 6.7497 34 1 1.2374 0.1292 5.7254 35 1 5.2720 -0.3428 5.5778 36 1 7.6768 -2.4592 6.5080 37 1 3.9166 -0.3028 2.1466 38 1 4.9646 0.8667 3.0043 39 1 3.0451 1.8349 -1.8985 40 1 2.2336 3.0829 -0.8568 41 1 4.3627 3.7487 0.1607 42 1 5.0760 3.1118 -1.3842 43 1 5.1947 1.6434 1.0997 44 1 5.1339 0.8188 -0.5175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214831539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:19 Heat of formation + Delta-G solvation = 31.938033 kcal Electronic energy + Delta-G solvation = -24088.599216 eV Core-core repulsion = 20814.546855 eV Total energy + Delta-G solvation = -3274.052361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00182 -39.73428 -38.19231 -35.85928 -34.78168 -33.90663 -32.50994 -30.45954 -29.14950 -27.82511 -26.54640 -25.92618 -24.97511 -23.20802 -21.81845 -21.27905 -19.52209 -19.19182 -19.07250 -17.46836 -17.44661 -16.88460 -16.52040 -15.97866 -15.50082 -15.34197 -15.24374 -15.00614 -14.67807 -14.44914 -14.41344 -13.98915 -13.79381 -13.33993 -13.20079 -13.07420 -12.89636 -12.81834 -12.66828 -12.19445 -12.15120 -12.05134 -12.00590 -11.87127 -11.69919 -11.43991 -11.33354 -11.09069 -10.98674 -10.85267 -10.68382 -9.68377 -9.01872 -7.91736 -5.21322 1.52256 1.52782 1.53487 1.60866 1.85552 1.90692 1.94392 2.58966 3.29165 3.29547 3.40107 3.52386 3.68756 3.76661 3.79725 3.88020 3.93744 4.03204 4.15419 4.31625 4.44546 4.46239 4.50281 4.62102 4.65282 4.73740 4.77416 4.83476 4.86678 4.94088 5.01806 5.04587 5.09014 5.11037 5.14476 5.22112 5.23370 5.32300 5.43785 5.44949 5.57841 6.28674 6.50178 6.70298 7.09681 7.37118 8.07429 8.32680 9.31077 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.005007 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.885449 B = 5590.877597 C = 6186.757156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.214 4.214 3 C 0.003 3.997 4 C -0.103 4.103 5 C 0.551 3.449 6 O -0.581 6.581 7 N -0.610 5.610 8 C 0.118 3.882 9 C -0.103 4.103 10 H 0.080 0.920 11 C -0.129 4.129 12 C 0.172 3.828 13 H 0.059 0.941 14 N -0.718 5.718 15 C -0.239 4.239 16 H 0.079 0.921 17 C -0.066 4.066 18 N -0.966 5.966 19 Si 0.965 3.035 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.270 1.270 23 C 0.085 3.915 24 C -0.110 4.110 25 C -0.137 4.137 26 C -0.122 4.122 27 H 0.239 0.761 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.115 0.885 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 6.354 -12.096 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.214 4.214 3 C -0.033 4.033 4 C -0.106 4.106 5 C 0.341 3.659 6 O -0.462 6.462 7 N -0.342 5.342 8 C -0.005 4.005 9 C -0.122 4.122 10 H 0.098 0.902 11 C -0.186 4.186 12 C 0.061 3.939 13 H 0.077 0.923 14 N -0.357 5.357 15 C -0.371 4.371 16 H 0.097 0.903 17 C -0.259 4.259 18 N -0.616 5.616 19 Si 0.795 3.205 20 H -0.213 1.213 21 H -0.227 1.227 22 H -0.195 1.195 23 C -0.040 4.040 24 C -0.148 4.148 25 C -0.174 4.174 26 C -0.159 4.159 27 H 0.256 0.744 28 H 0.145 0.855 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.210 0.790 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.444 6.687 -12.236 16.301 hybrid contribution 0.412 -0.675 0.560 0.969 sum -8.032 6.011 -11.676 15.394 Atomic orbital electron populations 1.25597 0.96929 0.99704 1.00533 1.23473 0.95376 1.01391 1.01113 1.18871 0.84681 0.94622 1.05124 1.21971 0.98956 0.96228 0.93444 1.20064 0.80035 0.81721 0.84108 1.90615 1.38231 1.29990 1.87354 1.48462 1.40948 1.39056 1.05737 1.21977 0.98154 0.98577 0.81770 1.22385 0.98944 0.95587 0.95326 0.90170 1.21619 0.97831 1.01602 0.97577 1.21472 0.89514 0.92483 0.90413 0.92335 1.42362 1.30842 1.12741 1.49800 1.19568 1.08004 0.90373 1.19137 0.90338 1.25443 0.98754 1.01825 0.99834 1.69798 1.20573 1.38212 1.33022 0.85267 0.78066 0.80585 0.76592 1.21305 1.22750 1.19531 1.23331 0.90835 0.88970 1.00857 1.22926 0.97937 0.97552 0.96361 1.22824 0.97290 0.96244 1.01049 1.23137 0.91501 0.99114 1.02159 0.74432 0.85542 0.89101 0.91655 0.91473 0.93071 0.90885 0.92312 0.79040 0.94059 0.90077 0.91887 0.86708 0.92403 0.92238 0.88381 0.91867 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.25 19.25 74.32 1.43 -3.82 16 2 C -0.21 -5.72 12.48 31.12 0.39 -5.33 16 3 C 0.00 0.07 5.01 28.79 0.14 0.22 16 4 C -0.10 -2.56 0.32 -52.40 -0.02 -2.58 16 5 C 0.55 17.82 5.74 87.66 0.50 18.33 16 6 O -0.58 -22.48 16.30 -3.03 -0.05 -22.53 16 7 N -0.61 -19.27 3.33 -811.77 -2.70 -21.97 16 8 C 0.12 3.55 6.48 86.73 0.56 4.11 16 9 C -0.10 -3.16 3.16 -9.60 -0.03 -3.19 16 10 H 0.08 2.55 7.99 -2.39 -0.02 2.53 16 11 C -0.13 -3.54 9.16 71.98 0.66 -2.88 16 12 C 0.17 6.21 3.14 46.38 0.15 6.35 16 13 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 14 N -0.72 -32.73 5.28 -316.39 -1.67 -34.40 16 15 C -0.24 -12.12 9.98 84.03 0.84 -11.28 16 16 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 17 C -0.07 -3.52 5.50 84.86 0.47 -3.06 16 18 N -0.97 -55.79 13.06 21.65 0.28 -55.51 16 19 Si 0.97 43.45 29.55 68.60 2.03 45.48 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 C 0.09 2.78 5.16 86.85 0.45 3.22 16 24 C -0.11 -2.41 7.00 31.18 0.22 -2.19 16 25 C -0.14 -2.79 7.81 31.18 0.24 -2.54 16 26 C -0.12 -2.57 6.66 31.12 0.21 -2.36 16 27 H 0.24 4.17 7.80 -4.41 -0.03 4.13 16 28 H 0.13 2.09 8.08 -2.39 -0.02 2.07 16 29 H 0.09 2.21 5.70 -2.39 -0.01 2.19 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.99 7.77 -2.39 -0.02 1.97 16 32 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.53 8.07 -2.39 -0.02 1.51 16 35 H 0.38 18.68 7.71 -92.70 -0.71 17.96 16 36 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 37 H 0.08 2.50 5.12 -2.39 -0.01 2.49 16 38 H 0.06 2.18 7.37 -2.39 -0.02 2.16 16 39 H 0.11 1.86 8.05 -2.39 -0.02 1.84 16 40 H 0.06 1.55 7.35 -2.39 -0.02 1.53 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.06 1.55 6.34 -2.39 -0.02 1.54 16 44 H 0.12 1.92 8.10 -2.38 -0.02 1.90 16 Total: -1.00 -64.99 356.03 4.37 -60.62 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.27 Total: 35.31 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 6.21 Total: -6.99 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -4.09 Total: -111.88 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -64.99 4.37 -60.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214831539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.556 kcal (2) G-P(sol) polarization free energy of solvation -64.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds