Wall clock time and date at job start Tue Mar 31 2020 07:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.48469 * 2 1 4 4 C 1.53042 * 109.48740 * 239.95013 * 2 1 3 5 5 N 1.46960 * 109.36344 * 181.62761 * 4 2 1 6 6 C 1.46899 * 111.00208 * 183.19030 * 5 4 2 7 7 C 1.50698 * 109.47119 * 190.00590 * 6 5 4 8 8 C 1.38297 * 119.93003 * 269.72730 * 7 6 5 9 9 C 1.38103 * 120.06963 * 179.72882 * 8 7 6 10 10 C 1.38872 * 119.92782 * 0.54307 * 9 8 7 11 11 O 1.35758 * 120.07050 * 179.75152 * 10 9 8 12 12 C 1.34826 * 117.00250 * 174.44564 * 11 10 9 13 13 H 1.07997 * 120.00118 * 5.04804 * 12 11 10 14 14 C 1.38651 * 119.99864 * 185.05814 * 12 11 10 15 15 N 1.31557 * 119.99967 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46970 * 89.99630 * 16 14 12 18 18 H 1.48498 * 109.46984 * 209.99410 * 16 14 12 19 19 H 1.48492 * 109.46997 * 329.99743 * 16 14 12 20 20 C 1.38880 * 119.86852 * 359.73031 * 10 9 8 21 21 C 1.38101 * 119.92197 * 359.97438 * 20 10 9 22 22 C 1.46962 * 110.87373 * 59.32457 * 5 4 2 23 23 C 1.53037 * 109.36776 * 300.67663 * 22 5 4 24 24 H 1.09006 * 109.49224 * 298.43690 * 23 22 5 25 25 C 1.52998 * 109.49312 * 178.39080 * 23 22 5 26 26 N 1.46954 * 109.48656 * 120.03922 * 2 1 3 27 27 H 1.09004 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47263 * 300.00392 * 1 2 3 29 29 H 1.09000 * 109.46795 * 60.00043 * 1 2 3 30 30 H 1.08997 * 109.49448 * 301.60188 * 4 2 1 31 31 H 1.09004 * 109.48660 * 61.67202 * 4 2 1 32 32 H 1.08999 * 109.46962 * 310.00288 * 6 5 4 33 33 H 1.08994 * 109.47002 * 70.00527 * 6 5 4 34 34 H 1.08002 * 119.96675 * 359.97438 * 8 7 6 35 35 H 1.08002 * 120.03510 * 180.27217 * 9 8 7 36 36 H 0.97006 * 119.99714 * 180.02562 * 15 14 12 37 37 H 1.07996 * 120.04239 * 179.97438 * 20 10 9 38 38 H 1.08009 * 119.96378 * 179.97438 * 21 20 10 39 39 H 1.09003 * 109.48968 * 60.65367 * 22 5 4 40 40 H 1.09001 * 109.48421 * 180.68857 * 22 5 4 41 41 H 1.09007 * 109.46785 * 60.00374 * 25 23 22 42 42 H 1.09003 * 109.47554 * 179.97438 * 25 23 22 43 43 H 1.08997 * 109.47292 * 300.00055 * 25 23 22 44 44 H 1.00906 * 111.00339 * 303.15736 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2488 5 7 3.5097 -0.7551 -1.2265 6 6 4.0411 -1.3748 -2.4477 7 6 5.5202 -1.6145 -2.2866 8 6 6.4231 -0.6402 -2.6713 9 6 7.7789 -0.8546 -2.5198 10 6 8.2357 -2.0547 -1.9909 11 8 9.5681 -2.2705 -1.8454 12 6 9.9397 -3.4062 -1.2209 13 1 9.1946 -4.1340 -0.9353 14 6 11.2783 -3.6396 -0.9452 15 7 12.1859 -2.7532 -1.2933 16 14 11.7930 -5.2128 -0.0793 17 1 12.0739 -6.2646 -1.0894 18 1 13.0160 -4.9585 0.7237 19 1 10.6983 -5.6660 0.8159 20 6 7.3268 -3.0335 -1.6108 21 6 5.9720 -2.8105 -1.7592 22 6 3.9999 -1.4491 -0.0274 23 6 3.4893 -0.7267 1.2214 24 1 3.8756 0.2926 1.2355 25 6 3.9648 -1.4700 2.4713 26 7 2.0203 -0.6935 1.1993 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6544 -1.7416 -1.2629 31 1 1.7022 -0.1926 -2.1393 32 1 3.5360 -2.3247 -2.6225 33 1 3.8708 -0.7113 -3.2956 34 1 6.0674 0.2910 -3.0870 35 1 8.4834 -0.0915 -2.8163 36 1 13.1225 -2.9167 -1.1007 37 1 7.6790 -3.9680 -1.1996 38 1 5.2646 -3.5715 -1.4642 39 1 3.6360 -2.4766 -0.0276 40 1 5.0899 -1.4494 -0.0276 41 1 5.0544 -1.4953 2.4865 42 1 3.6014 -0.9550 3.3607 43 1 3.5777 -2.4888 2.4575 44 1 1.6552 -0.2675 2.0380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236575381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:27 Heat of formation + Delta-G solvation = 1.257046 kcal Electronic energy + Delta-G solvation = -23223.994739 eV Core-core repulsion = 19948.611950 eV Total energy + Delta-G solvation = -3275.382789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.71662 -38.78709 -36.80588 -34.66092 -33.55004 -32.28961 -30.19340 -29.88494 -28.36042 -26.64359 -26.17200 -25.11576 -22.53031 -21.99851 -21.27819 -20.19770 -19.64282 -17.97734 -16.92942 -16.51917 -15.50877 -15.44296 -14.98983 -14.82338 -14.52787 -14.15494 -13.89796 -13.73001 -13.51371 -13.35925 -12.82825 -12.68454 -12.62903 -12.51677 -12.05595 -11.82826 -11.79235 -11.77177 -11.49507 -11.25760 -11.04605 -10.90496 -10.79004 -10.63394 -10.55705 -10.44331 -10.35809 -9.33606 -8.84101 -8.57842 -8.19880 -8.15002 -7.16542 -6.45841 -4.04664 2.21651 2.27104 3.11879 3.13017 3.17806 3.95757 3.98485 4.02009 4.62565 4.73090 4.84635 5.03354 5.09242 5.19068 5.26290 5.28530 5.30861 5.39111 5.42147 5.51202 5.56660 5.58200 5.69200 5.75413 5.80037 5.83076 5.86601 5.94441 6.00574 6.07756 6.17597 6.21500 6.28032 6.43537 6.70442 6.89511 6.90530 7.03668 7.10887 7.21033 7.28853 7.33039 7.40020 7.44250 7.82234 7.99204 8.99866 9.70116 10.72170 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.003516 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.790220 B = 7961.958509 C = 8646.114489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.045 0.955 4 C 0.061 3.939 5 N -0.537 5.537 6 C 0.114 3.886 7 C -0.186 4.186 8 C -0.053 4.053 9 C -0.195 4.195 10 C 0.157 3.843 11 O -0.178 6.178 12 C -0.392 4.392 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.234 4.234 21 C -0.064 4.064 22 C 0.063 3.937 23 C 0.085 3.915 24 H 0.045 0.955 25 C -0.144 4.144 26 N -0.684 5.684 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.270 0.730 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.036 0.964 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.448 3.521 3.206 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.063 0.937 4 C -0.067 4.067 5 N -0.261 5.261 6 C -0.012 4.012 7 C -0.187 4.187 8 C -0.072 4.072 9 C -0.214 4.214 10 C 0.103 3.897 11 O -0.081 6.081 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.497 5.497 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.192 1.192 20 C -0.253 4.253 21 C -0.083 4.083 22 C -0.066 4.066 23 C -0.024 4.024 24 H 0.063 0.937 25 C -0.203 4.203 26 N -0.317 5.317 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.120 0.880 39 H 0.054 0.946 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.867 3.532 2.878 19.410 hybrid contribution 0.173 -0.752 0.652 1.010 sum -18.694 2.780 3.530 19.227 Atomic orbital electron populations 1.21777 0.94291 1.02449 1.01621 1.21481 0.94571 0.95874 0.90513 0.93743 1.22174 0.88155 0.99277 0.97133 1.62280 1.07082 1.54099 1.02625 1.20798 0.92002 0.96757 0.91687 1.19087 0.93532 0.96266 1.09843 1.20464 0.91790 0.97348 0.97570 1.20218 0.95250 0.96841 1.09133 1.19397 0.84936 0.92834 0.92565 1.83981 1.16588 1.40750 1.66767 1.21319 0.93032 0.95380 1.37073 0.89092 1.25285 0.94651 0.99245 0.97306 1.70041 1.01590 1.34239 1.43871 0.85724 0.78666 0.80036 0.79093 1.19881 1.20237 1.19179 1.21117 0.92870 1.01295 1.10040 1.20613 0.94731 0.95735 0.97222 1.22275 1.01195 0.95047 0.88038 1.21540 0.86963 0.98506 0.95433 0.93733 1.21775 1.01540 1.00896 0.96049 1.60623 1.08610 1.58056 1.04445 0.91907 0.92698 0.92089 0.94383 0.90763 0.95035 0.90801 0.87026 0.86569 0.92014 0.85628 0.87978 0.94604 0.88888 0.91573 0.92829 0.91935 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.46 37.16 0.35 -0.78 16 2 C 0.09 0.88 3.19 -67.66 -0.22 0.66 16 3 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.06 0.70 4.86 -3.77 -0.02 0.68 16 5 N -0.54 -7.36 4.85 -235.92 -1.15 -8.51 16 6 C 0.11 1.62 5.43 -4.98 -0.03 1.59 16 7 C -0.19 -3.17 4.14 -104.58 -0.43 -3.60 16 8 C -0.05 -0.95 9.69 -39.61 -0.38 -1.34 16 9 C -0.20 -4.13 9.99 -39.40 -0.39 -4.52 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 O -0.18 -5.06 9.76 0.04 0.00 -5.06 16 12 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 13 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -25.29 13.67 55.48 0.76 -24.53 16 16 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 C -0.23 -5.04 9.17 -39.39 -0.36 -5.40 16 21 C -0.06 -1.17 7.83 -39.61 -0.31 -1.48 16 22 C 0.06 0.89 3.92 -3.77 -0.01 0.87 16 23 C 0.09 1.05 3.19 -67.66 -0.22 0.83 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 C -0.14 -1.59 9.47 37.16 0.35 -1.24 16 26 N -0.68 -7.36 6.19 -99.61 -0.62 -7.97 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.43 8.02 -51.93 -0.42 0.02 16 33 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 38 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.54 5.85 -51.93 -0.30 1.23 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.34 3.07 8.75 -39.29 -0.34 2.73 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -29.76 350.93 -9.58 -39.34 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.11 Total: 5.85 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -1.73 Total: -19.86 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: -1.00 Total: -41.01 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: 0.00 Total: -5.06 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.76 -9.58 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236575381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.597 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds