Wall clock time and date at job start Tue Mar 31 2020 07:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.48469 * 2 1 4 4 C 1.53042 * 109.48740 * 239.95013 * 2 1 3 5 5 N 1.46960 * 109.36344 * 181.62761 * 4 2 1 6 6 C 1.46899 * 111.00208 * 183.19030 * 5 4 2 7 7 C 1.50698 * 109.47119 * 190.00590 * 6 5 4 8 8 C 1.38297 * 119.93003 * 269.72730 * 7 6 5 9 9 C 1.38103 * 120.06963 * 179.72882 * 8 7 6 10 10 C 1.38872 * 119.92782 * 0.54307 * 9 8 7 11 11 O 1.35758 * 120.07050 * 179.75152 * 10 9 8 12 12 C 1.34826 * 117.00250 * 174.44564 * 11 10 9 13 13 H 1.07997 * 120.00118 * 5.04804 * 12 11 10 14 14 C 1.38651 * 119.99864 * 185.05814 * 12 11 10 15 15 N 1.31557 * 119.99967 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46970 * 89.99630 * 16 14 12 18 18 H 1.48498 * 109.46984 * 209.99410 * 16 14 12 19 19 H 1.48492 * 109.46997 * 329.99743 * 16 14 12 20 20 C 1.38880 * 119.86852 * 359.73031 * 10 9 8 21 21 C 1.38101 * 119.92197 * 359.97438 * 20 10 9 22 22 C 1.46962 * 110.87373 * 59.32457 * 5 4 2 23 23 C 1.53037 * 109.36776 * 300.67663 * 22 5 4 24 24 H 1.09006 * 109.49224 * 298.43690 * 23 22 5 25 25 C 1.52998 * 109.49312 * 178.39080 * 23 22 5 26 26 N 1.46954 * 109.48656 * 120.03922 * 2 1 3 27 27 H 1.09004 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47263 * 300.00392 * 1 2 3 29 29 H 1.09000 * 109.46795 * 60.00043 * 1 2 3 30 30 H 1.08997 * 109.49448 * 301.60188 * 4 2 1 31 31 H 1.09004 * 109.48660 * 61.67202 * 4 2 1 32 32 H 1.08999 * 109.46962 * 310.00288 * 6 5 4 33 33 H 1.08994 * 109.47002 * 70.00527 * 6 5 4 34 34 H 1.08002 * 119.96675 * 359.97438 * 8 7 6 35 35 H 1.08002 * 120.03510 * 180.27217 * 9 8 7 36 36 H 0.97006 * 119.99714 * 180.02562 * 15 14 12 37 37 H 1.07996 * 120.04239 * 179.97438 * 20 10 9 38 38 H 1.08009 * 119.96378 * 179.97438 * 21 20 10 39 39 H 1.09003 * 109.48968 * 60.65367 * 22 5 4 40 40 H 1.09001 * 109.48421 * 180.68857 * 22 5 4 41 41 H 1.09007 * 109.46785 * 60.00374 * 25 23 22 42 42 H 1.09003 * 109.47554 * 179.97438 * 25 23 22 43 43 H 1.08997 * 109.47292 * 300.00055 * 25 23 22 44 44 H 1.00906 * 111.00339 * 303.15736 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2488 5 7 3.5097 -0.7551 -1.2265 6 6 4.0411 -1.3748 -2.4477 7 6 5.5202 -1.6145 -2.2866 8 6 6.4231 -0.6402 -2.6713 9 6 7.7789 -0.8546 -2.5198 10 6 8.2357 -2.0547 -1.9909 11 8 9.5681 -2.2705 -1.8454 12 6 9.9397 -3.4062 -1.2209 13 1 9.1946 -4.1340 -0.9353 14 6 11.2783 -3.6396 -0.9452 15 7 12.1859 -2.7532 -1.2933 16 14 11.7930 -5.2128 -0.0793 17 1 12.0739 -6.2646 -1.0894 18 1 13.0160 -4.9585 0.7237 19 1 10.6983 -5.6660 0.8159 20 6 7.3268 -3.0335 -1.6108 21 6 5.9720 -2.8105 -1.7592 22 6 3.9999 -1.4491 -0.0274 23 6 3.4893 -0.7267 1.2214 24 1 3.8756 0.2926 1.2355 25 6 3.9648 -1.4700 2.4713 26 7 2.0203 -0.6935 1.1993 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6544 -1.7416 -1.2629 31 1 1.7022 -0.1926 -2.1393 32 1 3.5360 -2.3247 -2.6225 33 1 3.8708 -0.7113 -3.2956 34 1 6.0674 0.2910 -3.0870 35 1 8.4834 -0.0915 -2.8163 36 1 13.1225 -2.9167 -1.1007 37 1 7.6790 -3.9680 -1.1996 38 1 5.2646 -3.5715 -1.4642 39 1 3.6360 -2.4766 -0.0276 40 1 5.0899 -1.4494 -0.0276 41 1 5.0544 -1.4953 2.4865 42 1 3.6014 -0.9550 3.3607 43 1 3.5777 -2.4888 2.4575 44 1 1.6552 -0.2675 2.0380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236575381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:26 Heat of formation + Delta-G solvation = -19.066801 kcal Electronic energy + Delta-G solvation = -23224.876047 eV Core-core repulsion = 19948.611950 eV Total energy + Delta-G solvation = -3276.264097 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.06774 -40.20893 -38.40422 -35.85634 -34.43855 -34.24750 -31.82433 -31.35509 -29.17778 -27.81324 -27.60114 -26.71293 -23.76650 -23.64226 -22.22475 -21.65540 -20.62558 -19.83773 -18.80573 -17.46991 -16.69431 -16.50151 -16.38623 -16.27363 -15.92795 -15.59857 -15.44440 -15.31384 -14.74859 -14.52892 -14.36675 -14.11099 -13.68536 -13.61574 -13.41261 -13.06359 -12.90292 -12.72805 -12.69453 -12.68135 -12.34249 -12.28277 -12.17506 -12.11465 -11.80338 -11.64710 -11.48919 -11.18221 -10.79478 -9.77981 -9.48143 -9.28119 -8.86941 -8.47731 -6.15858 0.58331 0.65063 1.34398 1.43400 1.51876 2.17107 2.72022 3.01573 3.14888 3.27280 3.51506 3.83417 3.87331 4.01629 4.05871 4.17781 4.26982 4.29304 4.35110 4.40692 4.47487 4.59045 4.64050 4.70326 4.75726 4.79228 4.82666 4.85303 4.91507 5.04705 5.07759 5.10734 5.14225 5.19060 5.28634 5.29081 5.40286 5.55305 5.69936 5.78377 5.98942 6.02250 6.06808 6.17815 6.24827 6.51418 6.97050 7.77793 8.75528 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.003516 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.790220 B = 7961.958509 C = 8646.114489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.085 3.915 3 H 0.038 0.962 4 C 0.061 3.939 5 N -0.544 5.544 6 C 0.115 3.885 7 C -0.159 4.159 8 C -0.047 4.047 9 C -0.205 4.205 10 C 0.117 3.883 11 O -0.232 6.232 12 C -0.413 4.413 13 H 0.101 0.899 14 C -0.022 4.022 15 N -0.921 5.921 16 Si 1.017 2.983 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.253 1.253 20 C -0.240 4.240 21 C -0.059 4.059 22 C 0.066 3.934 23 C 0.089 3.911 24 H 0.033 0.967 25 C -0.140 4.140 26 N -0.684 5.684 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.273 0.727 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.031 0.969 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.128 3.323 3.562 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 H 0.056 0.944 4 C -0.067 4.067 5 N -0.268 5.268 6 C -0.011 4.011 7 C -0.160 4.160 8 C -0.065 4.065 9 C -0.224 4.224 10 C 0.067 3.933 11 O -0.138 6.138 12 C -0.489 4.489 13 H 0.118 0.882 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.836 3.164 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.177 1.177 20 C -0.260 4.260 21 C -0.078 4.078 22 C -0.062 4.062 23 C -0.021 4.021 24 H 0.051 0.949 25 C -0.198 4.198 26 N -0.318 5.318 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.163 0.837 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.623 3.351 3.228 23.097 hybrid contribution 0.955 -0.538 0.468 1.192 sum -21.668 2.813 3.696 22.160 Atomic orbital electron populations 1.21718 0.92211 1.02596 1.02822 1.21542 0.96126 0.95108 0.89718 0.94434 1.22286 0.86292 0.99568 0.98587 1.62293 1.08832 1.53700 1.01962 1.20854 0.89344 0.98150 0.92764 1.19540 0.95571 0.94864 1.06017 1.20824 0.90316 0.98794 0.96610 1.20457 0.96883 0.96009 1.09076 1.19907 0.84249 0.94709 0.94435 1.83945 1.18934 1.41684 1.69281 1.21804 0.93861 0.95817 1.37448 0.88187 1.26576 0.94272 1.03168 0.97950 1.70186 1.02046 1.37076 1.46590 0.84607 0.78530 0.75166 0.78053 1.18778 1.19545 1.17662 1.21181 0.94085 1.00543 1.10143 1.20868 0.93572 0.96948 0.96379 1.22159 0.99458 0.95201 0.89399 1.21421 0.88089 0.97624 0.94931 0.94934 1.21731 1.00758 1.00939 0.96392 1.60615 1.07355 1.58448 1.05372 0.92215 0.91685 0.90804 0.94649 0.89010 0.93845 0.88697 0.83714 0.86929 0.91828 0.86475 0.85394 0.95123 0.91722 0.92796 0.91031 0.92035 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.46 71.98 0.68 -0.97 16 2 C 0.08 1.47 3.19 44.92 0.14 1.62 16 3 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 4 C 0.06 1.17 4.86 86.31 0.42 1.59 16 5 N -0.54 -13.22 4.85 -900.31 -4.37 -17.59 16 6 C 0.12 2.83 5.43 85.56 0.46 3.29 16 7 C -0.16 -5.04 4.14 -19.84 -0.08 -5.13 16 8 C -0.05 -1.61 9.69 22.25 0.22 -1.40 16 9 C -0.20 -8.86 9.99 22.39 0.22 -8.64 16 10 C 0.12 5.91 6.65 22.58 0.15 6.06 16 11 O -0.23 -14.11 9.76 -22.79 -0.22 -14.33 16 12 C -0.41 -24.27 9.49 67.92 0.64 -23.62 16 13 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 14 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 15 N -0.92 -56.94 13.67 21.61 0.30 -56.65 16 16 Si 1.02 43.11 29.55 68.60 2.03 45.14 16 17 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 20 C -0.24 -10.57 9.17 22.39 0.21 -10.36 16 21 C -0.06 -2.07 7.83 22.25 0.17 -1.90 16 22 C 0.07 1.76 3.92 86.30 0.34 2.10 16 23 C 0.09 2.04 3.19 44.92 0.14 2.18 16 24 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 25 C -0.14 -2.90 9.47 71.98 0.68 -2.22 16 26 N -0.68 -12.86 6.19 -469.07 -2.90 -15.77 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.04 1.01 8.02 -2.39 -0.02 0.99 16 33 H 0.09 2.01 8.08 -2.39 -0.02 1.99 16 34 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 36 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 37 H 0.12 5.26 5.64 -2.91 -0.02 5.25 16 38 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 2.07 5.85 -2.39 -0.01 2.06 16 41 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.35 5.35 8.75 -89.69 -0.79 4.57 16 Total: -1.00 -68.91 350.93 -0.11 -69.02 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.20 Total: 28.37 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 4.87 Total: -38.19 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -6.98 Total: -90.00 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.22 Total: -14.33 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -68.91 -0.11 -69.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236575381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.952 kcal (2) G-P(sol) polarization free energy of solvation -68.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds