Wall clock time and date at job start Tue Mar 31 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47146 * 2 1 4 4 C 1.52999 * 109.47110 * 120.00369 * 2 1 3 5 5 N 1.46497 * 109.47161 * 66.43871 * 4 2 1 6 6 C 1.46502 * 119.99969 * 266.31794 * 5 4 2 7 7 C 1.50700 * 109.46977 * 263.92033 * 6 5 4 8 8 H 1.08003 * 120.00435 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00001 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00302 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 120.00074 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.46944 * 89.99530 * 11 9 7 13 13 H 1.48500 * 109.47078 * 209.99822 * 11 9 7 14 14 H 1.48498 * 109.46798 * 330.00051 * 11 9 7 15 15 C 1.34775 * 120.00052 * 86.32113 * 5 4 2 16 16 O 1.21279 * 120.00017 * 5.49121 * 15 5 4 17 17 C 1.50703 * 119.99994 * 185.48882 * 15 5 4 18 18 H 1.09000 * 109.47155 * 30.74572 * 17 15 5 19 19 C 1.52999 * 109.47393 * 270.74193 * 17 15 5 20 20 C 1.50704 * 109.46911 * 150.73850 * 17 15 5 21 21 C 1.38230 * 119.61207 * 85.00391 * 20 17 15 22 22 C 1.38634 * 119.15678 * 179.97438 * 21 20 17 23 23 C 1.38668 * 118.41890 * 0.02562 * 22 21 20 24 24 C 1.38178 * 119.16929 * 359.97438 * 23 22 21 25 25 N 1.31843 * 119.62109 * 264.72486 * 20 17 15 26 26 H 1.09000 * 109.47134 * 299.99518 * 1 2 3 27 27 H 1.09004 * 109.47049 * 59.99933 * 1 2 3 28 28 H 1.09003 * 109.47308 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47164 * 239.99925 * 2 1 3 30 30 H 1.08996 * 109.47331 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47419 * 300.00450 * 3 2 1 32 32 H 1.09000 * 109.47150 * 59.99916 * 3 2 1 33 33 H 1.09003 * 109.46977 * 306.43907 * 4 2 1 34 34 H 1.08997 * 109.47034 * 186.43860 * 4 2 1 35 35 H 1.08998 * 109.47340 * 23.91784 * 6 5 4 36 36 H 1.08998 * 109.46916 * 143.92729 * 6 5 4 37 37 H 0.97001 * 120.00537 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.46981 * 64.02004 * 19 17 15 39 39 H 1.08992 * 109.47127 * 184.02899 * 19 17 15 40 40 H 1.09003 * 109.46782 * 304.02605 * 19 17 15 41 41 H 1.08001 * 120.42425 * 359.97438 * 21 20 17 42 42 H 1.07997 * 120.78649 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.41923 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.62039 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6822 -2.1400 1.1742 6 6 0.4450 -2.6173 1.7968 7 6 0.7504 -3.1608 3.1688 8 1 1.7646 -3.1520 3.5398 9 6 -0.2651 -3.6693 3.9506 10 7 0.0012 -4.1432 5.1481 11 14 -2.0194 -3.6853 3.3088 12 1 -2.2714 -4.9594 2.5889 13 1 -2.9644 -3.5651 4.4480 14 1 -2.2168 -2.5442 2.3793 15 6 2.4913 -3.0060 0.5324 16 8 3.5623 -2.6315 0.1038 17 6 2.0654 -4.4397 0.3476 18 1 0.9793 -4.4888 0.2694 19 6 2.5283 -5.2681 1.5476 20 6 2.6849 -4.9894 -0.9115 21 6 3.9646 -5.5103 -0.8719 22 6 4.5252 -6.0140 -2.0355 23 6 3.7744 -5.9742 -3.2007 24 6 2.5013 -5.4381 -3.1635 25 7 1.9979 -4.9729 -2.0367 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4424 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.5856 -0.2784 2.1355 34 1 3.1239 -0.6226 1.3087 35 1 -0.2610 -1.7913 1.8821 36 1 0.0098 -3.4055 1.1825 37 1 -0.7131 -4.5013 5.6980 38 1 2.0252 -4.9159 2.4481 39 1 2.2835 -6.3170 1.3812 40 1 3.6064 -5.1614 1.6685 41 1 4.5208 -5.5248 0.0538 42 1 5.5228 -6.4275 -2.0345 43 1 4.1792 -6.3580 -4.1254 44 1 1.9100 -5.4038 -4.0666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292178746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:18 Heat of formation + Delta-G solvation = -29.681562 kcal Electronic energy + Delta-G solvation = -24142.058976 eV Core-core repulsion = 20865.334589 eV Total energy + Delta-G solvation = -3276.724388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.20 seconds Orbital eigenvalues (eV) -41.68678 -40.49310 -37.69494 -36.00671 -34.86820 -34.18679 -33.37777 -30.68443 -30.03389 -28.03326 -27.54139 -25.70115 -24.53435 -24.22910 -22.97742 -21.26061 -19.83098 -19.01650 -18.17581 -17.93063 -17.25428 -16.98090 -16.39318 -16.12661 -15.83815 -15.68807 -14.92795 -14.85633 -14.80794 -14.48103 -14.21684 -13.94515 -13.75490 -13.73151 -13.26237 -13.09994 -13.07854 -12.89614 -12.67579 -12.54465 -12.34982 -12.24127 -12.12245 -11.99131 -11.77935 -11.61003 -11.55141 -10.89722 -10.74867 -10.59924 -10.36118 -9.86113 -9.40753 -8.26733 -6.30951 0.18344 0.40889 1.39919 1.42613 1.50076 1.69428 2.22504 2.35724 2.91132 3.06553 3.26999 3.68289 3.80798 3.97709 4.00189 4.02563 4.15687 4.16982 4.20959 4.32706 4.39058 4.54642 4.63397 4.70571 4.70898 4.75813 4.82228 4.85615 4.88553 4.93705 4.97534 5.01882 5.03456 5.20140 5.25860 5.29204 5.36582 5.40248 5.47177 5.49521 5.73355 5.83231 6.22504 6.57890 6.72473 7.07385 7.23571 7.35004 8.88427 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.006540 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.855168 B = 4280.489736 C = 5623.050030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.120 3.880 5 N -0.590 5.590 6 C 0.215 3.785 7 C -0.528 4.528 8 H 0.040 0.960 9 C 0.029 3.971 10 N -0.936 5.936 11 Si 0.925 3.075 12 H -0.266 1.266 13 H -0.285 1.285 14 H -0.241 1.241 15 C 0.530 3.470 16 O -0.588 6.588 17 C -0.053 4.053 18 H 0.098 0.902 19 C -0.140 4.140 20 C 0.128 3.872 21 C -0.162 4.162 22 C -0.078 4.078 23 C -0.169 4.169 24 C 0.083 3.917 25 N -0.515 5.515 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.036 0.964 37 H 0.268 0.732 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.133 0.867 42 H 0.166 0.834 43 H 0.173 0.827 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 0.582 -15.195 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.193 4.193 4 C -0.003 4.003 5 N -0.319 5.319 6 C 0.093 3.907 7 C -0.567 4.567 8 H 0.058 0.942 9 C -0.171 4.171 10 N -0.575 5.575 11 Si 0.748 3.252 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.164 1.164 15 C 0.319 3.681 16 O -0.470 6.470 17 C -0.075 4.075 18 H 0.116 0.884 19 C -0.198 4.198 20 C -0.009 4.009 21 C -0.182 4.182 22 C -0.103 4.103 23 C -0.188 4.188 24 C -0.074 4.074 25 N -0.225 5.225 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.150 0.850 42 H 0.183 0.817 43 H 0.191 0.809 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.781 1.070 -15.233 15.522 hybrid contribution 0.062 -0.564 0.590 0.818 sum 2.843 0.506 -14.643 14.925 Atomic orbital electron populations 1.21868 0.94341 1.01437 1.02461 1.21406 0.96847 0.97220 0.96855 1.21702 1.00814 0.93820 1.02930 1.21565 1.00074 0.79957 0.98710 1.47902 1.23432 1.08000 1.52523 1.19763 0.83071 0.95894 0.91990 1.21392 0.95091 1.40413 0.99764 0.94202 1.25587 1.02853 0.94101 0.94560 1.70022 1.34568 1.41861 1.11059 0.86042 0.79835 0.80425 0.78858 1.19090 1.21028 1.16415 1.20396 0.83432 0.87592 0.76696 1.90560 1.23614 1.79860 1.52992 1.20018 1.02011 0.92115 0.93364 0.88359 1.21875 1.01403 0.99385 0.97092 1.20663 0.92200 0.95456 0.92550 1.22076 0.95650 0.99530 1.00930 1.21987 1.01057 0.95633 0.91653 1.22516 0.95320 1.00604 1.00365 1.23281 0.94715 0.93777 0.95646 1.67362 1.38553 1.17017 0.99553 0.91882 0.91288 0.94011 0.93491 0.92938 0.91105 0.91459 0.90038 0.92078 0.93099 0.94654 0.92322 0.90100 0.90738 0.92470 0.84964 0.81686 0.80928 0.80146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 8.35 71.98 0.60 -3.49 16 2 C -0.10 -3.20 3.10 -10.80 -0.03 -3.23 16 3 C -0.13 -3.24 9.19 71.98 0.66 -2.58 16 4 C 0.12 4.42 4.82 86.38 0.42 4.83 16 5 N -0.59 -24.82 2.27 -826.16 -1.87 -26.69 16 6 C 0.21 9.40 2.98 85.63 0.26 9.65 16 7 C -0.53 -27.42 7.51 25.60 0.19 -27.23 16 8 H 0.04 2.37 7.73 -2.91 -0.02 2.35 16 9 C 0.03 1.52 5.47 84.65 0.46 1.98 16 10 N -0.94 -54.18 13.96 21.45 0.30 -53.88 16 11 Si 0.93 39.91 27.47 68.60 1.88 41.80 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 14 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 15 C 0.53 23.08 6.65 87.66 0.58 23.67 16 16 O -0.59 -27.62 15.72 -3.03 -0.05 -27.67 16 17 C -0.05 -2.12 2.39 -12.28 -0.03 -2.15 16 18 H 0.10 4.03 6.05 -2.39 -0.01 4.01 16 19 C -0.14 -5.44 8.44 71.98 0.61 -4.83 16 20 C 0.13 4.65 5.33 42.56 0.23 4.88 16 21 C -0.16 -5.06 8.89 22.36 0.20 -4.86 16 22 C -0.08 -1.80 10.18 22.47 0.23 -1.57 16 23 C -0.17 -3.47 10.11 22.36 0.23 -3.24 16 24 C 0.08 2.11 11.18 84.67 0.95 3.05 16 25 N -0.52 -17.75 10.27 -183.89 -1.89 -19.64 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.04 1.34 6.28 -2.39 -0.01 1.32 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 2.92 8.04 -2.39 -0.02 2.90 16 34 H 0.06 2.37 7.46 -2.39 -0.02 2.36 16 35 H 0.05 2.13 5.71 -2.39 -0.01 2.12 16 36 H 0.04 1.53 5.41 -2.39 -0.01 1.52 16 37 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.08 3.72 5.15 -2.39 -0.01 3.70 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.06 2.11 6.72 -2.39 -0.02 2.10 16 41 H 0.13 4.07 6.41 -2.91 -0.02 4.05 16 42 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 43 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 44 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -67.26 349.47 4.84 -62.42 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.93 Total: 28.79 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.55 Total: -5.12 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -3.46 Total: -100.21 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.05 Total: -27.67 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.88 Total: 41.80 kcal Total: -67.26 4.84 -62.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292178746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.734 kcal (2) G-P(sol) polarization free energy of solvation -67.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.21 seconds