Wall clock time and date at job start Tue Mar 31 2020 08:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.47464 * 2 1 4 4 C 1.53000 * 109.47380 * 120.00477 * 2 1 3 5 5 N 1.46499 * 109.47514 * 175.00031 * 4 2 1 6 6 C 1.34779 * 120.00219 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99681 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99955 * 179.97438 * 6 5 4 9 9 H 1.08991 * 109.47355 * 59.99841 * 8 6 5 10 10 C 1.50704 * 109.46746 * 299.99858 * 8 6 5 11 11 H 1.07999 * 120.00229 * 324.87818 * 10 8 6 12 12 C 1.37879 * 119.99984 * 144.88507 * 10 8 6 13 13 N 1.31515 * 119.99954 * 5.18946 * 12 10 8 14 14 Si 1.86797 * 120.00183 * 185.19103 * 12 10 8 15 15 H 1.48496 * 109.47132 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46858 * 119.99630 * 14 12 10 17 17 H 1.48493 * 109.47195 * 239.99614 * 14 12 10 18 18 C 1.50701 * 109.46978 * 180.02562 * 8 6 5 19 19 C 1.38234 * 120.00044 * 66.00816 * 18 8 6 20 20 C 1.38240 * 119.99371 * 179.81098 * 19 18 8 21 21 C 1.38235 * 120.00326 * 0.39860 * 20 19 18 22 22 C 1.38237 * 119.99640 * 359.85566 * 21 20 19 23 23 C 1.38229 * 120.00583 * 359.95633 * 22 21 20 24 24 N 1.46899 * 109.47226 * 240.00112 * 2 1 3 25 25 C 1.46892 * 111.00319 * 306.05043 * 24 2 1 26 26 C 1.46910 * 110.99495 * 70.00132 * 24 2 1 27 27 H 1.09005 * 109.47256 * 59.99369 * 1 2 3 28 28 H 1.08998 * 109.47435 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47257 * 299.99747 * 1 2 3 30 30 H 1.09001 * 109.47014 * 54.99718 * 4 2 1 31 31 H 1.09004 * 109.47238 * 294.99954 * 4 2 1 32 32 H 0.97005 * 119.99615 * 359.97438 * 5 4 2 33 33 H 0.96999 * 120.00475 * 180.02562 * 13 12 10 34 34 H 1.07994 * 120.00305 * 359.97438 * 19 18 8 35 35 H 1.08000 * 119.99452 * 180.22958 * 20 19 18 36 36 H 1.07994 * 120.00076 * 179.83246 * 21 20 19 37 37 H 1.08002 * 119.99995 * 179.97438 * 22 21 20 38 38 H 1.07995 * 120.00650 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.46974 * 59.99590 * 25 24 2 40 40 H 1.09003 * 109.47808 * 179.97438 * 25 24 2 41 41 H 1.09001 * 109.47231 * 300.00074 * 25 24 2 42 42 H 1.09000 * 109.47193 * 60.00585 * 26 24 2 43 43 H 1.08999 * 109.46823 * 180.02562 * 26 24 2 44 44 H 1.08996 * 109.47258 * 299.99540 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1730 -1.4294 2.1906 7 8 3.5699 -1.8844 3.1393 8 6 5.6749 -1.5380 2.1299 9 1 6.1098 -0.5397 2.0842 10 6 6.0730 -2.3161 0.9022 11 1 5.4568 -3.1333 0.5575 12 6 7.2240 -1.9848 0.2192 13 7 8.0273 -1.0585 0.6948 14 14 7.6423 -2.8515 -1.3817 15 1 6.5850 -3.8452 -1.6976 16 1 7.7272 -1.8530 -2.4777 17 1 8.9476 -3.5456 -1.2424 18 6 6.1771 -2.2495 3.3598 19 6 5.8600 -3.5789 3.5671 20 6 6.3240 -4.2325 4.6934 21 6 7.0982 -3.5545 5.6163 22 6 7.4109 -2.2237 5.4115 23 6 6.9502 -1.5710 4.2834 24 7 2.0196 -0.6925 -1.1994 25 6 1.4343 -2.0353 -1.3080 26 6 1.7528 0.0974 -2.4090 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6053 -1.7199 1.2950 31 1 1.7517 -0.1585 2.1370 32 1 3.9823 -0.4628 0.4315 33 1 8.8368 -0.8250 0.2142 34 1 5.2520 -4.1075 2.8480 35 1 6.0794 -5.2722 4.8535 36 1 7.4585 -4.0645 6.4975 37 1 8.0154 -1.6938 6.1328 38 1 7.1941 -0.5312 4.1236 39 1 0.3489 -1.9547 -1.3695 40 1 1.8132 -2.5256 -2.2047 41 1 1.7058 -2.6221 -0.4304 42 1 2.2561 1.0612 -2.3320 43 1 2.1250 -0.4384 -3.2822 44 1 0.6791 0.2552 -2.5105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299845557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:49 Heat of formation + Delta-G solvation = -30.587818 kcal Electronic energy + Delta-G solvation = -23705.465266 eV Core-core repulsion = 20428.701580 eV Total energy + Delta-G solvation = -3276.763686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 14.36 seconds Orbital eigenvalues (eV) -40.86995 -39.70410 -38.88526 -35.46828 -35.08414 -32.86474 -31.91787 -31.51575 -29.28614 -28.52722 -27.18680 -25.66706 -24.85999 -23.19008 -22.36462 -21.02025 -20.54006 -18.61778 -17.73541 -17.53531 -17.24489 -16.86714 -16.32251 -15.82753 -15.69678 -15.62332 -15.28022 -15.08288 -14.56783 -14.17186 -14.07810 -13.91632 -13.75099 -13.42869 -13.25244 -13.09831 -13.00608 -12.81960 -12.73505 -12.71693 -12.42670 -12.17373 -12.13300 -11.91022 -11.75045 -11.63743 -11.22848 -10.65348 -10.38497 -9.76102 -9.53743 -9.23593 -9.15719 -8.17201 -6.27449 0.77775 0.83116 1.42722 1.45547 1.56348 2.02302 2.46454 2.62182 3.07077 3.13220 3.31046 3.79210 4.05055 4.24229 4.29421 4.31736 4.34299 4.41282 4.43583 4.52166 4.58468 4.63685 4.66961 4.68267 4.82094 4.87680 4.91393 4.99996 5.01649 5.08563 5.10459 5.13928 5.26742 5.39801 5.47396 5.68872 5.77660 5.80246 5.86079 5.99229 6.14351 6.17762 6.27209 6.43371 6.76746 6.92417 7.39004 7.64653 8.91223 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.005789 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.232719 B = 4835.538241 C = 6245.931687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.094 0.906 4 C 0.130 3.870 5 N -0.705 5.705 6 C 0.522 3.478 7 O -0.600 6.600 8 C 0.053 3.947 9 H 0.063 0.937 10 C -0.507 4.507 11 H 0.049 0.951 12 C 0.033 3.967 13 N -0.906 5.906 14 Si 0.955 3.045 15 H -0.270 1.270 16 H -0.273 1.273 17 H -0.287 1.287 18 C -0.036 4.036 19 C -0.111 4.111 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.143 4.143 24 N -0.557 5.557 25 C 0.024 3.976 26 C 0.026 3.974 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.411 0.589 33 H 0.266 0.734 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.106 0.894 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 2.189 -2.496 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.034 4.034 3 H 0.112 0.888 4 C 0.006 3.994 5 N -0.355 5.355 6 C 0.311 3.689 7 O -0.483 6.483 8 C 0.032 3.968 9 H 0.081 0.919 10 C -0.545 4.545 11 H 0.067 0.933 12 C -0.168 4.168 13 N -0.544 5.544 14 Si 0.781 3.219 15 H -0.195 1.195 16 H -0.198 1.198 17 H -0.213 1.213 18 C -0.037 4.037 19 C -0.130 4.130 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.161 4.161 24 N -0.281 5.281 25 C -0.124 4.124 26 C -0.122 4.122 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.248 0.752 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.124 0.876 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.294 1.937 -1.860 10.639 hybrid contribution -0.143 -0.163 -1.330 1.347 sum -10.437 1.774 -3.190 11.057 Atomic orbital electron populations 1.22302 0.94732 1.02839 1.03564 1.21909 0.94571 0.98101 0.88769 0.88806 1.21372 0.80612 0.99815 0.97613 1.45691 1.07111 1.59255 1.23466 1.21392 0.91303 0.75338 0.80838 1.90530 1.71690 1.50548 1.35539 1.17990 0.87529 0.98368 0.92936 0.91853 1.20707 1.08520 1.16609 1.08646 0.93256 1.25572 0.95583 0.95430 1.00234 1.70028 1.12722 1.31951 1.39666 0.85545 0.77672 0.78698 0.79985 1.19468 1.19782 1.21316 1.20140 0.95002 0.94554 0.93976 1.20831 0.99860 0.94710 0.97567 1.21318 0.99047 1.00391 0.94563 1.21264 1.00051 0.94714 1.00191 1.21301 1.00501 0.95587 0.97332 1.21132 0.99991 0.99779 0.95183 1.62054 1.59418 1.03491 1.03135 1.22372 0.97816 0.90198 1.01996 1.22413 0.99890 0.98297 0.91608 0.90729 0.92103 0.90850 0.93428 0.92073 0.75239 0.92497 0.88906 0.84695 0.83496 0.84222 0.87579 0.93559 0.91419 0.93303 0.91067 0.91316 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.44 71.98 0.61 -2.52 16 2 C 0.08 1.77 2.47 44.91 0.11 1.88 16 3 H 0.09 2.10 8.06 -2.38 -0.02 2.08 16 4 C 0.13 4.10 4.84 86.38 0.42 4.52 16 5 N -0.70 -27.64 5.29 -463.05 -2.45 -30.08 16 6 C 0.52 24.80 7.04 87.66 0.62 25.42 16 7 O -0.60 -30.99 15.42 -3.03 -0.05 -31.04 16 8 C 0.05 2.70 2.38 -13.03 -0.03 2.67 16 9 H 0.06 3.46 7.13 -2.39 -0.02 3.44 16 10 C -0.51 -26.78 7.47 25.60 0.19 -26.59 16 11 H 0.05 2.68 7.82 -2.91 -0.02 2.65 16 12 C 0.03 1.75 5.45 84.65 0.46 2.21 16 13 N -0.91 -49.77 12.84 21.45 0.28 -49.49 16 14 Si 0.96 42.31 29.54 68.60 2.03 44.33 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 18 C -0.04 -1.78 4.30 -19.86 -0.09 -1.87 16 19 C -0.11 -5.27 8.31 22.27 0.18 -5.09 16 20 C -0.14 -5.32 10.05 22.27 0.22 -5.10 16 21 C -0.14 -5.13 10.05 22.27 0.22 -4.91 16 22 C -0.13 -4.93 10.05 22.27 0.22 -4.70 16 23 C -0.14 -6.52 9.67 22.27 0.22 -6.31 16 24 N -0.56 -13.95 4.41 -923.27 -4.07 -18.02 16 25 C 0.02 0.59 8.78 127.69 1.12 1.71 16 26 C 0.03 0.50 9.36 127.69 1.20 1.69 16 27 H 0.07 1.12 6.69 -2.38 -0.02 1.10 16 28 H 0.06 1.12 6.33 -2.39 -0.02 1.10 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.05 1.60 6.80 -2.39 -0.02 1.59 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.41 16.13 8.02 -92.70 -0.74 15.38 16 33 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 34 H 0.09 4.57 7.89 -2.91 -0.02 4.54 16 35 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 38 H 0.11 4.79 7.96 -2.91 -0.02 4.77 16 39 H 0.05 0.92 6.21 -2.38 -0.01 0.91 16 40 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 41 H 0.05 1.42 6.58 -2.39 -0.02 1.40 16 42 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 43 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 44 H 0.04 0.65 6.62 -2.39 -0.02 0.64 16 Total: -1.00 -64.50 356.69 1.65 -62.84 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.24 Total: 38.43 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 5.68 Total: -16.97 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -6.24 Total: -97.59 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.05 Total: -31.04 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -64.50 1.65 -62.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299845557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.256 kcal (2) G-P(sol) polarization free energy of solvation -64.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.36 seconds