Wall clock time and date at job start Tue Mar 31 2020 08:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46866 * 2 1 4 4 C 1.50705 * 109.47133 * 119.99587 * 2 1 3 5 5 O 1.21277 * 119.99929 * 119.99962 * 4 2 1 6 6 N 1.34773 * 119.99941 * 300.00367 * 4 2 1 7 7 C 1.46498 * 120.00043 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47272 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47269 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46953 * 305.00936 * 9 8 7 11 11 C 1.52996 * 109.47332 * 185.00423 * 9 8 7 12 12 N 1.46505 * 109.46807 * 65.00478 * 9 8 7 13 13 C 1.36931 * 119.99788 * 205.00000 * 12 9 8 14 14 H 1.08002 * 120.00438 * 0.02562 * 13 12 9 15 15 C 1.38817 * 119.99680 * 179.72358 * 13 12 9 16 16 N 1.31614 * 119.99888 * 0.27479 * 15 13 12 17 17 Si 1.86803 * 119.99862 * 180.27671 * 15 13 12 18 18 H 1.48496 * 109.47141 * 59.99751 * 17 15 13 19 19 H 1.48490 * 109.47071 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46993 * 300.00028 * 17 15 13 21 21 C 1.50702 * 109.47627 * 239.99803 * 2 1 3 22 22 C 1.38224 * 119.99729 * 299.72961 * 21 2 1 23 23 C 1.38237 * 119.99892 * 179.80737 * 22 21 2 24 24 C 1.38239 * 119.99916 * 0.39631 * 23 22 21 25 25 C 1.38226 * 119.99802 * 359.85847 * 24 23 22 26 26 C 1.38234 * 120.00224 * 359.95076 * 25 24 23 27 27 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47500 * 300.00445 * 1 2 3 29 29 H 1.08998 * 109.47045 * 60.00227 * 1 2 3 30 30 H 0.97004 * 120.00109 * 359.97438 * 6 4 2 31 31 H 1.09000 * 109.46784 * 60.00269 * 7 6 4 32 32 H 1.08992 * 109.47427 * 300.00334 * 7 6 4 33 33 H 1.09000 * 109.46766 * 60.00541 * 8 7 6 34 34 H 1.08992 * 109.47398 * 300.00634 * 8 7 6 35 35 H 1.08998 * 109.47019 * 59.99816 * 11 9 8 36 36 H 1.08998 * 109.47099 * 180.02562 * 11 9 8 37 37 H 1.09002 * 109.46807 * 300.00318 * 11 9 8 38 38 H 0.97000 * 119.99792 * 24.99795 * 12 9 8 39 39 H 0.97005 * 119.99715 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.00679 * 359.97438 * 22 21 2 41 41 H 1.07999 * 120.00237 * 180.23044 * 23 22 21 42 42 H 1.07997 * 119.99656 * 179.83273 * 24 23 22 43 43 H 1.07999 * 120.00190 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.00210 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 2.1945 -0.9407 3.6508 8 6 1.6851 -0.2189 4.9000 9 6 2.1951 -0.9401 6.1493 10 1 1.9065 -1.9902 6.1059 11 6 1.5855 -0.2946 7.3954 12 7 3.6552 -0.8370 6.2107 13 6 4.3799 -1.7781 6.8921 14 1 3.8752 -2.5964 7.3840 15 6 5.7638 -1.6836 6.9454 16 7 6.3790 -0.6866 6.3455 17 14 6.7531 -2.9716 7.8684 18 1 6.5074 -4.3078 7.2689 19 1 8.1987 -2.6452 7.7762 20 1 6.3392 -2.9853 9.2945 21 6 2.0324 -0.7104 -1.2304 22 6 1.7031 -2.0354 -1.4463 23 6 2.1607 -2.6860 -2.5769 24 6 2.9544 -2.0138 -3.4875 25 6 3.2880 -0.6903 -3.2690 26 6 2.8271 -0.0386 -2.1403 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.1492 0.5390 2.5435 31 1 3.2845 -0.9410 3.6510 32 1 1.8309 -1.9681 3.6507 33 1 0.5950 -0.2183 4.9000 34 1 2.0490 0.8084 4.8999 35 1 0.4992 -0.3712 7.3497 36 1 1.9492 -0.8081 8.2854 37 1 1.8742 0.7556 7.4387 38 1 4.1086 -0.1022 5.7686 39 1 7.3460 -0.6204 6.3830 40 1 1.0862 -2.5617 -0.7330 41 1 1.9004 -3.7202 -2.7474 42 1 3.3141 -2.5229 -4.3694 43 1 3.9084 -0.1652 -3.9801 44 1 3.0881 0.9953 -1.9694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317412680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:16 Heat of formation + Delta-G solvation = -17.771582 kcal Electronic energy + Delta-G solvation = -22539.652421 eV Core-core repulsion = 19263.444489 eV Total energy + Delta-G solvation = -3276.207932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25189 -38.66060 -36.56468 -34.38131 -34.19492 -32.20546 -30.94675 -29.83326 -28.96716 -27.96758 -24.97662 -23.82145 -22.83971 -22.58752 -21.45665 -20.24369 -19.42816 -17.30633 -17.05044 -16.79263 -15.86238 -15.54976 -15.03830 -14.89019 -14.57036 -14.01823 -13.81006 -13.69887 -13.46945 -13.34852 -13.14173 -12.74805 -12.48205 -12.40206 -12.19833 -12.01855 -11.74946 -11.52662 -11.11370 -11.03211 -10.96791 -10.87716 -10.70792 -10.61132 -10.27763 -9.99172 -9.62047 -9.53491 -8.91443 -8.89213 -8.76574 -8.74896 -6.92705 -5.72330 -3.00998 1.28895 1.39917 2.82207 3.32951 3.47754 3.52308 3.53036 3.82319 4.41485 4.63279 4.64261 4.88941 4.93470 4.98444 5.09523 5.12200 5.31096 5.38327 5.41797 5.44488 5.52220 5.58839 5.63498 5.71185 5.85071 5.89919 5.94006 6.00744 6.08712 6.19404 6.36683 6.40381 6.41717 6.47510 6.51231 6.56498 6.70948 6.74487 6.88155 6.95843 7.07709 7.69194 7.73887 8.42800 8.46022 9.57314 10.14019 10.48590 11.50274 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.003282 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.098233 B = 8528.298231 C = 9600.302731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 H 0.103 0.897 4 C 0.511 3.489 5 O -0.527 6.527 6 N -0.728 5.728 7 C 0.122 3.878 8 C -0.132 4.132 9 C 0.174 3.826 10 H 0.049 0.951 11 C -0.163 4.163 12 N -0.723 5.723 13 C -0.239 4.239 14 H 0.069 0.931 15 C -0.012 4.012 16 N -0.933 5.933 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.066 4.066 22 C -0.083 4.083 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.112 4.112 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.395 0.605 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.597 3.883 -17.108 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 H 0.121 0.879 4 C 0.296 3.704 5 O -0.402 6.402 6 N -0.380 5.380 7 C -0.001 4.001 8 C -0.170 4.170 9 C 0.064 3.936 10 H 0.067 0.933 11 C -0.224 4.224 12 N -0.365 5.365 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.208 4.208 16 N -0.581 5.581 17 Si 0.736 3.264 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.214 1.214 21 C -0.066 4.066 22 C -0.101 4.101 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.130 4.130 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.228 0.772 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.997 2.999 -17.078 22.284 hybrid contribution 0.632 -0.014 0.559 0.844 sum -13.365 2.985 -16.519 21.458 Atomic orbital electron populations 1.21782 0.92114 1.03044 1.02736 1.20321 0.97596 1.00313 0.91245 0.87891 1.20388 0.80635 0.84974 0.84403 1.90759 1.36891 1.26043 1.86525 1.46107 1.53747 1.32031 1.06084 1.21444 1.01101 0.95526 0.81990 1.22054 0.99746 1.00266 0.94982 1.20150 0.85983 0.96882 0.90608 0.93349 1.22426 0.97981 1.01082 1.00862 1.42441 0.99334 1.31167 1.63592 1.19175 0.88917 1.03552 1.25360 0.91287 1.24721 0.96538 0.98428 1.01144 1.69644 1.08334 1.32005 1.48126 0.86294 0.79326 0.81234 0.79502 1.21252 1.21743 1.21363 1.19314 0.98205 0.94473 0.94612 1.20910 0.99082 0.93769 0.96343 1.21115 0.98536 0.99784 0.94683 1.21122 0.98567 0.94862 0.99453 1.21056 1.00391 0.95069 0.97762 1.21007 0.97583 0.99897 0.94560 0.91840 0.91661 0.91328 0.77156 0.89801 0.91939 0.91981 0.91648 0.94592 0.92731 0.93541 0.78300 0.93518 0.86346 0.86211 0.86338 0.86198 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.91 37.15 0.33 -0.77 16 2 C -0.07 -0.78 2.90 -92.92 -0.27 -1.05 16 3 H 0.10 0.91 7.88 -51.93 -0.41 0.50 16 4 C 0.51 7.54 7.02 -10.98 -0.08 7.46 16 5 O -0.53 -10.35 15.09 5.56 0.08 -10.27 16 6 N -0.73 -9.67 5.45 -60.30 -0.33 -10.00 16 7 C 0.12 2.04 5.56 -4.04 -0.02 2.02 16 8 C -0.13 -2.00 4.87 -26.73 -0.13 -2.13 16 9 C 0.17 3.34 2.89 -67.93 -0.20 3.15 16 10 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 11 C -0.16 -2.85 9.49 37.16 0.35 -2.50 16 12 N -0.72 -17.85 4.57 -53.42 -0.24 -18.10 16 13 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 17 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 C -0.07 -0.80 4.40 -104.63 -0.46 -1.26 16 22 C -0.08 -1.05 7.92 -39.59 -0.31 -1.36 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 24 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 25 C -0.12 -1.31 10.05 -39.59 -0.40 -1.71 16 26 C -0.11 -1.26 9.67 -39.58 -0.38 -1.64 16 27 H 0.06 0.54 7.40 -51.93 -0.38 0.16 16 28 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.39 3.85 7.89 -40.82 -0.32 3.53 16 31 H 0.08 1.77 7.75 -51.93 -0.40 1.37 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 39 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.12 1.49 7.52 -52.49 -0.39 1.10 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 44 H 0.12 1.10 7.95 -52.49 -0.42 0.68 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -33.79 365.37 -9.12 -42.91 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.23 Total: 10.47 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.61 Total: -10.53 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.15 Total: -55.89 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.79 -9.12 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317412680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.141 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds