Wall clock time and date at job start Tue Mar 31 2020 08:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46866 * 2 1 4 4 C 1.50705 * 109.47133 * 119.99587 * 2 1 3 5 5 O 1.21277 * 119.99929 * 119.99962 * 4 2 1 6 6 N 1.34773 * 119.99941 * 300.00367 * 4 2 1 7 7 C 1.46498 * 120.00043 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47272 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47269 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46953 * 305.00936 * 9 8 7 11 11 C 1.52996 * 109.47332 * 185.00423 * 9 8 7 12 12 N 1.46505 * 109.46807 * 65.00478 * 9 8 7 13 13 C 1.36931 * 119.99788 * 205.00000 * 12 9 8 14 14 H 1.08002 * 120.00438 * 0.02562 * 13 12 9 15 15 C 1.38817 * 119.99680 * 179.72358 * 13 12 9 16 16 N 1.31614 * 119.99888 * 0.27479 * 15 13 12 17 17 Si 1.86803 * 119.99862 * 180.27671 * 15 13 12 18 18 H 1.48496 * 109.47141 * 59.99751 * 17 15 13 19 19 H 1.48490 * 109.47071 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46993 * 300.00028 * 17 15 13 21 21 C 1.50702 * 109.47627 * 239.99803 * 2 1 3 22 22 C 1.38224 * 119.99729 * 299.72961 * 21 2 1 23 23 C 1.38237 * 119.99892 * 179.80737 * 22 21 2 24 24 C 1.38239 * 119.99916 * 0.39631 * 23 22 21 25 25 C 1.38226 * 119.99802 * 359.85847 * 24 23 22 26 26 C 1.38234 * 120.00224 * 359.95076 * 25 24 23 27 27 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47500 * 300.00445 * 1 2 3 29 29 H 1.08998 * 109.47045 * 60.00227 * 1 2 3 30 30 H 0.97004 * 120.00109 * 359.97438 * 6 4 2 31 31 H 1.09000 * 109.46784 * 60.00269 * 7 6 4 32 32 H 1.08992 * 109.47427 * 300.00334 * 7 6 4 33 33 H 1.09000 * 109.46766 * 60.00541 * 8 7 6 34 34 H 1.08992 * 109.47398 * 300.00634 * 8 7 6 35 35 H 1.08998 * 109.47019 * 59.99816 * 11 9 8 36 36 H 1.08998 * 109.47099 * 180.02562 * 11 9 8 37 37 H 1.09002 * 109.46807 * 300.00318 * 11 9 8 38 38 H 0.97000 * 119.99792 * 24.99795 * 12 9 8 39 39 H 0.97005 * 119.99715 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.00679 * 359.97438 * 22 21 2 41 41 H 1.07999 * 120.00237 * 180.23044 * 23 22 21 42 42 H 1.07997 * 119.99656 * 179.83273 * 24 23 22 43 43 H 1.07999 * 120.00190 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.00210 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 2.1945 -0.9407 3.6508 8 6 1.6851 -0.2189 4.9000 9 6 2.1951 -0.9401 6.1493 10 1 1.9065 -1.9902 6.1059 11 6 1.5855 -0.2946 7.3954 12 7 3.6552 -0.8370 6.2107 13 6 4.3799 -1.7781 6.8921 14 1 3.8752 -2.5964 7.3840 15 6 5.7638 -1.6836 6.9454 16 7 6.3790 -0.6866 6.3455 17 14 6.7531 -2.9716 7.8684 18 1 6.5074 -4.3078 7.2689 19 1 8.1987 -2.6452 7.7762 20 1 6.3392 -2.9853 9.2945 21 6 2.0324 -0.7104 -1.2304 22 6 1.7031 -2.0354 -1.4463 23 6 2.1607 -2.6860 -2.5769 24 6 2.9544 -2.0138 -3.4875 25 6 3.2880 -0.6903 -3.2690 26 6 2.8271 -0.0386 -2.1403 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.1492 0.5390 2.5435 31 1 3.2845 -0.9410 3.6510 32 1 1.8309 -1.9681 3.6507 33 1 0.5950 -0.2183 4.9000 34 1 2.0490 0.8084 4.8999 35 1 0.4992 -0.3712 7.3497 36 1 1.9492 -0.8081 8.2854 37 1 1.8742 0.7556 7.4387 38 1 4.1086 -0.1022 5.7686 39 1 7.3460 -0.6204 6.3830 40 1 1.0862 -2.5617 -0.7330 41 1 1.9004 -3.7202 -2.7474 42 1 3.3141 -2.5229 -4.3694 43 1 3.9084 -0.1652 -3.9801 44 1 3.0881 0.9953 -1.9694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317412680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:14 Heat of formation + Delta-G solvation = -39.517985 kcal Electronic energy + Delta-G solvation = -22540.595416 eV Core-core repulsion = 19263.444489 eV Total energy + Delta-G solvation = -3277.150927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30073 -39.65260 -38.11749 -35.82406 -35.16364 -34.07503 -31.77404 -31.18552 -30.31907 -29.31256 -26.04816 -25.59601 -24.12714 -23.45837 -22.53188 -21.61366 -20.68929 -19.27203 -18.07181 -17.80418 -17.05425 -16.82728 -16.45328 -16.04206 -15.79052 -15.46830 -15.33703 -14.88509 -14.67956 -14.36245 -14.17379 -14.11927 -13.73349 -13.54095 -13.24626 -13.16377 -13.00982 -12.79437 -12.62753 -12.51897 -12.31389 -12.22776 -12.12955 -11.85481 -11.78776 -11.63026 -11.58840 -10.95019 -10.74322 -10.06561 -9.76491 -9.61440 -8.97916 -7.92982 -5.19607 0.43983 0.54600 1.45005 1.48209 1.53632 1.66881 2.22844 2.56767 2.94841 3.41142 3.57279 3.79469 3.92306 4.01339 4.06458 4.14067 4.23073 4.24758 4.29424 4.37023 4.38813 4.63511 4.67029 4.69558 4.77850 4.85246 4.89174 4.94399 5.03311 5.10820 5.13882 5.17806 5.22771 5.27620 5.40353 5.48841 5.53513 5.58366 5.62249 5.64031 5.70807 6.14301 6.30009 6.61845 7.32215 7.35979 8.14404 8.35477 9.30406 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.003282 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.098233 B = 8528.298231 C = 9600.302731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 H 0.128 0.872 4 C 0.506 3.494 5 O -0.584 6.584 6 N -0.712 5.712 7 C 0.134 3.866 8 C -0.115 4.115 9 C 0.163 3.837 10 H 0.040 0.960 11 C -0.153 4.153 12 N -0.735 5.735 13 C -0.235 4.235 14 H 0.073 0.927 15 C -0.078 4.078 16 N -0.970 5.970 17 Si 0.966 3.034 18 H -0.283 1.283 19 H -0.297 1.297 20 H -0.276 1.276 21 C -0.084 4.084 22 C -0.105 4.105 23 C -0.138 4.138 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.124 4.124 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.417 0.583 31 H 0.032 0.968 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.045 0.955 38 H 0.371 0.629 39 H 0.248 0.752 40 H 0.107 0.893 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.562 4.992 -17.662 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 H 0.146 0.854 4 C 0.293 3.707 5 O -0.463 6.463 6 N -0.364 5.364 7 C 0.010 3.990 8 C -0.153 4.153 9 C 0.055 3.945 10 H 0.058 0.942 11 C -0.213 4.213 12 N -0.376 5.376 13 C -0.367 4.367 14 H 0.091 0.909 15 C -0.270 4.270 16 N -0.621 5.621 17 Si 0.796 3.204 18 H -0.209 1.209 19 H -0.223 1.223 20 H -0.202 1.202 21 C -0.084 4.084 22 C -0.124 4.124 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.142 4.142 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.254 0.746 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.203 0.797 39 H 0.057 0.943 40 H 0.125 0.875 41 H 0.150 0.850 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.052 4.133 -17.615 24.187 hybrid contribution 1.161 -0.387 0.683 1.401 sum -14.891 3.746 -16.932 22.857 Atomic orbital electron populations 1.21798 0.89735 1.02964 1.04663 1.20362 0.99410 1.00471 0.88245 0.85445 1.21224 0.79473 0.84295 0.85683 1.90734 1.39506 1.28729 1.87366 1.45885 1.53418 1.32323 1.04800 1.21060 0.98002 0.95700 0.84286 1.21908 1.02131 0.99474 0.91777 1.20467 0.83128 0.97403 0.93527 0.94161 1.22259 1.00330 1.00292 0.98383 1.42645 1.01718 1.30160 1.63088 1.19566 0.89409 1.03669 1.24074 0.90904 1.25487 0.97796 1.00655 1.03018 1.69800 1.07936 1.34032 1.50320 0.85309 0.77433 0.78893 0.78770 1.20918 1.22334 1.20190 1.19578 0.98790 0.94580 0.95488 1.21008 0.99993 0.94510 0.96857 1.21385 0.98866 1.00618 0.94721 1.21462 0.98033 0.95203 0.99963 1.21442 1.00184 0.95226 0.98010 1.21341 0.97213 1.01005 0.94637 0.92962 0.89519 0.89571 0.74579 0.94989 0.93412 0.87522 0.90920 0.90506 0.94952 0.93575 0.79662 0.94284 0.87492 0.85021 0.84033 0.83765 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.91 71.98 0.64 -1.16 16 2 C -0.06 -1.27 2.90 -12.29 -0.04 -1.31 16 3 H 0.13 1.90 7.88 -2.38 -0.02 1.88 16 4 C 0.51 14.85 7.02 87.66 0.62 15.46 16 5 O -0.58 -23.93 15.09 -3.02 -0.05 -23.97 16 6 N -0.71 -18.08 5.45 -463.07 -2.52 -20.60 16 7 C 0.13 4.48 5.56 86.38 0.48 4.96 16 8 C -0.11 -3.23 4.87 30.60 0.15 -3.08 16 9 C 0.16 6.09 2.89 44.99 0.13 6.22 16 10 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 11 C -0.15 -4.98 9.49 71.98 0.68 -4.30 16 12 N -0.74 -36.79 4.57 -322.93 -1.48 -38.27 16 13 C -0.24 -13.27 9.93 84.04 0.83 -12.43 16 14 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 15 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 16 N -0.97 -60.98 13.06 21.65 0.28 -60.69 16 17 Si 0.97 47.74 29.55 68.60 2.03 49.77 16 18 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 19 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 21 C -0.08 -2.00 4.40 -19.87 -0.09 -2.09 16 22 C -0.11 -2.73 7.92 22.27 0.18 -2.55 16 23 C -0.14 -3.16 10.05 22.27 0.22 -2.94 16 24 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 25 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 26 C -0.12 -2.61 9.67 22.27 0.22 -2.39 16 27 H 0.05 0.83 7.40 -2.39 -0.02 0.81 16 28 H 0.09 0.78 7.56 -2.39 -0.02 0.77 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.42 6.88 7.89 -92.71 -0.73 6.15 16 31 H 0.03 1.41 7.75 -2.39 -0.02 1.39 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.37 20.09 7.80 -92.71 -0.72 19.37 16 39 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 40 H 0.11 2.88 7.52 -2.91 -0.02 2.85 16 41 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 42 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 44 H 0.14 2.25 7.95 -2.91 -0.02 2.22 16 Total: -1.00 -77.09 365.37 2.73 -74.35 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.47 Total: 33.81 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 4.94 Total: -14.40 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -3.72 Total: -119.56 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -77.09 2.73 -74.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317412680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.835 kcal (2) G-P(sol) polarization free energy of solvation -77.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds