Wall clock time and date at job start Tue Mar 31 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 O 1.42899 * 109.47347 * 119.99896 * 2 1 3 5 5 C 1.42905 * 113.99778 * 89.99741 * 4 2 1 6 6 C 1.53120 * 109.52432 * 269.68559 * 5 4 2 7 7 C 1.53034 * 109.27836 * 182.44258 * 6 5 4 8 8 N 1.46850 * 109.52572 * 59.17516 * 7 6 5 9 9 C 1.38814 * 111.00258 * 174.16087 * 8 7 6 10 10 C 1.39807 * 119.58402 * 303.93847 * 9 8 7 11 11 C 1.38594 * 119.48938 * 179.78840 * 10 9 8 12 12 C 1.38387 * 118.68073 * 0.47728 * 11 10 9 13 13 C 1.40551 * 119.14990 * 359.74811 * 12 11 10 14 14 C 1.41322 * 119.78622 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99875 * 0.02562 * 14 13 12 16 16 C 1.40019 * 120.00204 * 180.02562 * 14 13 12 17 17 N 1.30744 * 120.00209 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00004 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47171 * 90.00417 * 18 16 14 20 20 H 1.48510 * 109.46981 * 210.00359 * 18 16 14 21 21 H 1.48500 * 109.47088 * 329.99923 * 18 16 14 22 22 N 1.31950 * 119.58603 * 124.21463 * 9 8 7 23 23 C 1.46846 * 111.19937 * 298.26307 * 8 7 6 24 24 C 1.53037 * 109.52614 * 61.73723 * 23 8 7 25 25 H 1.09001 * 109.47258 * 59.99672 * 1 2 3 26 26 H 1.08992 * 109.46809 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46539 * 299.99899 * 1 2 3 28 28 H 1.08999 * 109.47264 * 239.99963 * 2 1 3 29 29 H 1.09008 * 109.47077 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46958 * 300.00004 * 3 2 1 31 31 H 1.09001 * 109.47379 * 60.00616 * 3 2 1 32 32 H 1.08995 * 109.52142 * 29.87562 * 5 4 2 33 33 H 1.09007 * 109.49971 * 302.38358 * 6 5 4 34 34 H 1.08989 * 109.50323 * 62.49836 * 6 5 4 35 35 H 1.08997 * 109.46379 * 299.16360 * 7 6 5 36 36 H 1.08997 * 109.46321 * 179.19252 * 7 6 5 37 37 H 1.07993 * 120.25151 * 359.97438 * 10 9 8 38 38 H 1.07996 * 120.65927 * 180.22280 * 11 10 9 39 39 H 1.08001 * 120.42804 * 179.76910 * 12 11 10 40 40 H 0.97003 * 120.00293 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.46185 * 301.72361 * 23 8 7 42 42 H 1.08999 * 109.46012 * 181.75278 * 23 8 7 43 43 H 1.08994 * 109.50406 * 180.87797 * 24 23 8 44 44 H 1.09007 * 109.50241 * 60.76211 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 0.9113 -2.8223 1.3490 7 6 1.1434 -4.3290 1.2149 8 7 2.2333 -4.7393 2.1095 9 6 2.3833 -6.1193 2.1105 10 6 1.2923 -6.9320 2.4327 11 6 1.4432 -8.3097 2.4288 12 6 2.6813 -8.8413 2.1133 13 6 3.7408 -7.9716 1.8028 14 6 5.0110 -8.5001 1.4791 15 1 5.1649 -9.5690 1.4705 16 6 6.0698 -7.6378 1.1696 17 7 5.8837 -6.3437 1.1805 18 14 7.7485 -8.3363 0.7411 19 1 7.8313 -8.5620 -0.7243 20 1 8.8041 -7.3771 1.1547 21 1 7.9446 -9.6251 1.4524 22 7 3.5553 -6.6473 1.8126 23 6 3.4924 -4.0732 1.7527 24 6 3.3304 -2.5588 1.9029 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.4606 -2.2811 -0.0502 33 1 0.6304 -2.5873 2.3757 34 1 0.1130 -2.5155 0.6734 35 1 1.4108 -4.5650 0.1849 36 1 0.2319 -4.8623 1.4846 37 1 0.3386 -6.4896 2.6799 38 1 0.6121 -8.9553 2.6713 39 1 2.8313 -9.9108 2.1053 40 1 6.6174 -5.7463 0.9664 41 1 3.7488 -4.3103 0.7202 42 1 4.2869 -4.4207 2.4131 43 1 4.2603 -2.0639 1.6230 44 1 3.0876 -2.3197 2.9383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320656313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:09 Heat of formation + Delta-G solvation = -27.305269 kcal Electronic energy + Delta-G solvation = -23679.465129 eV Core-core repulsion = 20402.843786 eV Total energy + Delta-G solvation = -3276.621344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 11.06 seconds Orbital eigenvalues (eV) -41.12221 -39.80342 -38.16592 -35.53350 -34.36360 -32.79293 -32.38850 -31.67774 -30.27879 -28.05811 -27.47613 -25.07968 -24.39484 -22.83408 -22.28415 -22.23014 -20.73963 -19.36424 -18.12877 -17.66680 -16.68382 -16.41881 -16.36912 -16.09891 -15.81612 -15.59001 -15.11419 -14.87006 -14.34918 -14.27890 -13.95568 -13.82257 -13.70125 -13.25912 -13.07188 -13.03800 -12.84744 -12.75023 -12.66124 -12.59474 -12.34614 -12.24561 -12.12576 -11.80251 -11.74082 -11.50736 -11.29828 -11.22206 -10.48315 -10.42345 -9.91914 -9.49593 -8.76796 -8.28295 -6.49861 0.89252 1.19062 1.40537 1.51956 1.54624 2.22765 2.64925 2.77434 2.99897 3.76275 3.79645 3.94321 4.01903 4.05632 4.15037 4.21227 4.32145 4.35768 4.41116 4.48178 4.53866 4.60972 4.75018 4.78560 4.81229 4.86515 4.91961 4.93876 4.96378 4.99535 5.03972 5.09579 5.18355 5.27715 5.29535 5.32281 5.40736 5.41873 5.67052 5.89341 5.98441 6.02764 6.32687 6.38487 6.50214 6.79439 7.06338 8.18092 8.45107 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.004367 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.748721 B = 6410.575615 C = 7691.757208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 C -0.146 4.146 4 O -0.387 6.387 5 C 0.098 3.902 6 C -0.125 4.125 7 C 0.068 3.932 8 N -0.482 5.482 9 C 0.304 3.696 10 C -0.323 4.323 11 C -0.041 4.041 12 C -0.320 4.320 13 C 0.240 3.760 14 C -0.467 4.467 15 H 0.086 0.914 16 C 0.029 3.971 17 N -0.745 5.745 18 Si 0.983 3.017 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.258 1.258 22 N -0.534 5.534 23 C 0.099 3.901 24 C -0.107 4.107 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.023 0.977 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.277 0.723 41 H 0.022 0.978 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 12.084 -4.070 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 C -0.203 4.203 4 O -0.307 6.307 5 C 0.041 3.959 6 C -0.163 4.163 7 C -0.058 4.058 8 N -0.201 5.201 9 C 0.066 3.934 10 C -0.348 4.348 11 C -0.066 4.066 12 C -0.343 4.343 13 C 0.114 3.886 14 C -0.499 4.499 15 H 0.104 0.896 16 C -0.194 4.194 17 N -0.367 5.367 18 Si 0.804 3.196 19 H -0.189 1.189 20 H -0.193 1.193 21 H -0.182 1.182 22 N -0.253 5.253 23 C -0.028 4.028 24 C -0.145 4.145 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.042 0.958 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.049 13.116 -3.666 14.902 hybrid contribution 0.262 -1.516 -0.696 1.688 sum -5.787 11.600 -4.361 13.678 Atomic orbital electron populations 1.22433 0.94993 1.02683 1.03129 1.22412 0.94694 0.94341 0.87464 1.21869 1.01440 0.93812 1.03228 1.87926 1.86461 1.19544 1.36800 1.22105 0.94659 0.80956 0.98226 1.22184 0.98194 0.92183 1.03716 1.22137 0.93817 0.96856 0.92991 1.59206 1.07981 1.03017 1.49864 1.20330 0.91015 0.89557 0.92524 1.21034 0.99284 0.93788 1.20702 1.21102 0.96299 0.94668 0.94499 1.21822 0.95520 0.99193 1.17761 1.18823 0.93605 0.87503 0.88672 1.19918 0.93782 0.94887 1.41265 0.89616 1.26882 1.04227 0.94858 0.93395 1.70210 1.33124 1.04161 1.29182 0.85193 0.75981 0.79190 0.79229 1.18917 1.19313 1.18217 1.68636 1.21107 1.13520 1.22019 1.21479 0.90341 0.91769 0.99248 1.21675 0.98435 0.93699 1.00691 0.90102 0.92293 0.92037 0.92223 0.92654 0.89358 0.92041 0.92560 0.90500 0.88718 0.95812 0.89244 0.86194 0.84872 0.87589 0.91269 0.95923 0.91734 0.90555 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 9.33 71.98 0.67 -2.26 16 2 C 0.07 1.37 3.34 30.60 0.10 1.47 16 3 C -0.15 -2.42 9.56 71.98 0.69 -1.73 16 4 O -0.39 -10.30 9.66 -148.98 -1.44 -11.74 16 5 C 0.10 2.81 2.68 30.67 0.08 2.89 16 6 C -0.13 -3.41 5.47 30.65 0.17 -3.24 16 7 C 0.07 2.33 5.25 86.32 0.45 2.78 16 8 N -0.48 -20.30 4.67 -701.90 -3.28 -23.58 16 9 C 0.30 15.02 6.41 133.43 0.85 15.88 16 10 C -0.32 -14.63 9.20 22.73 0.21 -14.42 16 11 C -0.04 -1.85 10.15 22.39 0.23 -1.62 16 12 C -0.32 -16.15 9.83 22.87 0.22 -15.92 16 13 C 0.24 13.55 6.55 40.18 0.26 13.82 16 14 C -0.47 -25.59 9.14 23.46 0.21 -25.38 16 15 H 0.09 4.43 7.85 -2.91 -0.02 4.40 16 16 C 0.03 1.46 5.50 85.29 0.47 1.93 16 17 N -0.75 -39.31 11.46 21.84 0.25 -39.06 16 18 Si 0.98 38.26 29.56 68.60 2.03 40.29 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 N -0.53 -29.73 6.16 -186.59 -1.15 -30.88 16 23 C 0.10 4.17 4.65 86.33 0.40 4.57 16 24 C -0.11 -3.55 5.75 30.65 0.18 -3.38 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.02 5.55 -2.39 -0.01 1.01 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.18 7.37 -2.39 -0.02 1.16 16 29 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.61 7.37 -2.39 -0.02 1.59 16 33 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.09 2.10 5.61 -2.39 -0.01 2.09 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 2.86 6.67 -2.39 -0.02 2.84 16 37 H 0.12 4.73 7.15 -2.91 -0.02 4.71 16 38 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 39 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.28 13.26 8.29 -92.71 -0.77 12.49 16 41 H 0.02 1.05 8.11 -2.39 -0.02 1.03 16 42 H 0.06 3.16 7.70 -2.39 -0.02 3.14 16 43 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -62.84 346.66 2.58 -60.26 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.97 Total: 29.33 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 5.20 Total: -24.62 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -4.18 Total: -93.52 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.44 Total: -11.74 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -62.84 2.58 -60.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320656313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.955 kcal (2) G-P(sol) polarization free energy of solvation -62.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.06 seconds