Wall clock time and date at job start Tue Mar 31 2020 07:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.52748 * 2 1 4 4 C 1.53119 * 109.51787 * 120.12617 * 2 1 3 5 5 C 1.53037 * 109.27613 * 177.56006 * 4 2 1 6 6 N 1.46844 * 109.52573 * 300.82043 * 5 4 2 7 7 C 1.46841 * 111.20106 * 61.73969 * 6 5 4 8 8 C 1.53036 * 109.52434 * 298.26573 * 7 6 5 9 9 H 1.09002 * 109.50002 * 299.23542 * 8 7 6 10 10 N 1.46903 * 109.50727 * 179.11726 * 8 7 6 11 11 C 1.46903 * 110.99982 * 85.19056 * 10 8 7 12 12 C 1.50702 * 109.46933 * 180.02562 * 11 10 8 13 13 C 1.38322 * 119.96361 * 269.72282 * 12 11 10 14 14 C 1.38283 * 120.13521 * 179.76356 * 13 12 11 15 15 C 1.38120 * 120.06983 * 0.51789 * 14 13 12 16 16 C 1.38858 * 119.92987 * 359.74168 * 15 14 13 17 17 O 1.35750 * 120.07235 * 179.97438 * 16 15 14 18 18 C 1.34835 * 116.99660 * 354.49351 * 17 16 15 19 19 H 1.08001 * 119.99877 * 5.04850 * 18 17 16 20 20 C 1.38655 * 119.99600 * 185.05475 * 18 17 16 21 21 N 1.31549 * 120.00358 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99570 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46577 * 90.00119 * 22 20 18 24 24 H 1.48498 * 109.46715 * 210.00179 * 22 20 18 25 25 H 1.48497 * 109.46957 * 330.00158 * 22 20 18 26 26 C 1.38078 * 119.96206 * 90.00207 * 12 11 10 27 27 H 1.09003 * 109.47665 * 299.87632 * 1 2 3 28 28 H 1.09013 * 109.47050 * 59.87597 * 1 2 3 29 29 H 1.09003 * 109.47654 * 179.87109 * 1 2 3 30 30 H 1.09000 * 109.50275 * 297.49901 * 4 2 1 31 31 H 1.08999 * 109.50514 * 57.61894 * 4 2 1 32 32 H 1.09004 * 109.46567 * 60.83555 * 5 4 2 33 33 H 1.09000 * 109.46271 * 180.80101 * 5 4 2 34 34 H 1.00903 * 110.99946 * 185.84049 * 6 5 4 35 35 H 1.09003 * 109.46093 * 58.27152 * 7 6 5 36 36 H 1.08992 * 109.46702 * 178.25688 * 7 6 5 37 37 H 1.00904 * 110.99594 * 321.23789 * 10 8 7 38 38 H 1.09004 * 109.47176 * 300.00156 * 11 10 8 39 39 H 1.08999 * 109.46935 * 60.00584 * 11 10 8 40 40 H 1.07996 * 119.93145 * 0.02562 * 13 12 11 41 41 H 1.07994 * 119.96384 * 180.25583 * 14 13 12 42 42 H 1.08002 * 120.03677 * 179.71527 * 15 14 13 43 43 H 0.97000 * 120.00243 * 179.97438 * 21 20 18 44 44 H 1.07995 * 120.04026 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0415 -0.7244 1.2483 5 6 3.5707 -0.7745 1.2122 6 7 4.0102 -1.4789 0.0010 7 6 3.5708 -0.7760 -1.2111 8 6 2.0417 -0.7258 -1.2473 9 1 1.6447 -1.7407 -1.2664 10 7 1.6030 -0.0040 -2.4493 11 6 1.5334 -0.9044 -3.6080 12 6 1.0815 -0.1302 -4.8193 13 6 -0.2665 -0.0323 -5.1133 14 6 -0.6854 0.6814 -6.2212 15 6 0.2424 1.2899 -7.0438 16 6 1.5967 1.1889 -6.7544 17 8 2.5110 1.7854 -7.5612 18 6 2.0484 2.3632 -8.6882 19 1 0.9855 2.4093 -8.8743 20 6 2.9372 2.8978 -9.6083 21 7 4.2319 2.8411 -9.3820 22 14 2.2962 3.6977 -11.1701 23 1 2.0646 5.1440 -10.9263 24 1 3.2950 3.5325 -12.2566 25 1 1.0197 3.0521 -11.5688 26 6 2.0140 0.4759 -5.6377 27 1 -0.3634 0.5119 0.8911 28 1 -0.3634 0.5158 -0.8890 29 1 -0.3634 -1.0277 -0.0023 30 1 1.7160 -0.1878 2.1394 31 1 1.6445 -1.7393 1.2685 32 1 3.9674 0.2408 1.2059 33 1 3.9376 -1.3022 2.0926 34 1 5.0108 -1.6087 0.0012 35 1 3.9674 0.2393 -1.2059 36 1 3.9376 -1.3048 -2.0907 37 1 2.2055 0.7830 -2.6385 38 1 2.5188 -1.3308 -3.7965 39 1 0.8237 -1.7059 -3.4031 40 1 -0.9936 -0.5106 -4.4740 41 1 -1.7388 0.7595 -6.4459 42 1 -0.0851 1.8433 -7.9116 43 1 4.8537 3.2148 -10.0258 44 1 3.0666 0.3957 -5.4099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325743070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:41 Heat of formation + Delta-G solvation = -11.885164 kcal Electronic energy + Delta-G solvation = -22721.409603 eV Core-core repulsion = 19445.456925 eV Total energy + Delta-G solvation = -3275.952678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.50061 -38.91329 -36.79830 -35.00271 -33.43220 -32.27543 -31.07402 -29.29193 -28.62058 -26.97815 -25.43835 -24.47986 -22.40860 -22.06230 -21.51832 -20.74440 -19.82029 -17.63779 -17.02519 -16.70872 -15.45275 -15.09013 -14.86109 -14.68808 -14.51270 -14.37022 -14.24609 -14.01567 -13.65272 -13.54720 -13.07731 -12.76778 -12.53976 -12.27713 -12.17711 -11.96164 -11.80862 -11.60610 -11.37600 -11.25990 -10.83891 -10.78194 -10.74733 -10.63312 -10.56929 -10.46530 -10.25507 -9.32766 -8.82976 -8.73711 -8.36609 -8.02123 -7.20635 -6.43616 -4.02862 2.12516 2.41540 3.13190 3.14202 3.18924 3.89182 3.97597 4.29897 4.62992 4.66324 4.69303 4.86105 4.98968 5.09024 5.15084 5.21351 5.26659 5.34551 5.41037 5.52836 5.56237 5.60777 5.64395 5.74394 5.81225 5.88089 5.91263 5.94778 5.99612 6.07563 6.21874 6.29558 6.34830 6.40893 6.67053 6.69905 6.93134 7.08496 7.09683 7.15196 7.30092 7.41131 7.45148 7.49398 7.84926 8.01519 9.02424 9.72966 10.74669 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.003029 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.125198 B = 9242.703281 C = 9962.909602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 H 0.065 0.935 4 C -0.113 4.113 5 C 0.056 3.944 6 N -0.687 5.687 7 C 0.027 3.973 8 C 0.095 3.905 9 H 0.084 0.916 10 N -0.673 5.673 11 C 0.107 3.893 12 C -0.046 4.046 13 C -0.188 4.188 14 C -0.077 4.077 15 C -0.231 4.231 16 C 0.153 3.847 17 O -0.181 6.181 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.185 4.185 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.341 0.659 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.343 0.657 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.269 0.731 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 -6.637 17.456 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 H 0.083 0.917 4 C -0.151 4.151 5 C -0.074 4.074 6 N -0.318 5.318 7 C -0.105 4.105 8 C -0.015 4.015 9 H 0.102 0.898 10 N -0.303 5.303 11 C -0.022 4.022 12 C -0.047 4.047 13 C -0.208 4.208 14 C -0.096 4.096 15 C -0.251 4.251 16 C 0.099 3.901 17 O -0.085 6.085 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.205 4.205 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.162 0.838 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.640 -7.031 17.489 19.412 hybrid contribution 1.295 1.127 -1.087 2.033 sum -3.345 -5.904 16.402 17.750 Atomic orbital electron populations 1.21680 0.94384 1.01453 1.01842 1.21116 0.96610 0.98946 0.93250 0.91676 1.21672 0.94436 1.01337 0.97692 1.21952 0.96373 0.96321 0.92716 1.60252 1.18547 1.51283 1.01727 1.22758 0.97843 0.96764 0.93100 1.21632 0.91368 0.98146 0.90394 0.89797 1.60660 1.56366 1.10514 1.02757 1.20829 0.99365 0.94139 0.87835 1.19172 0.93254 0.97760 0.94527 1.20417 0.94543 1.06047 0.99749 1.20747 0.98086 0.96318 0.94418 1.21189 0.92907 1.07537 1.03442 1.19306 0.88940 0.90839 0.90979 1.83975 1.32282 1.61502 1.30711 1.21313 0.93627 1.36452 0.95362 0.89133 1.25269 0.94957 0.97401 0.98878 1.70033 1.01205 1.42820 1.35959 0.85728 0.78578 0.79308 0.79912 1.19906 1.20280 1.19211 1.20024 0.98870 1.04498 0.97123 0.93734 0.90975 0.93343 0.91544 0.91173 0.95314 0.90954 0.84107 0.94956 0.90784 0.83822 0.94703 0.90592 0.87613 0.87535 0.85697 0.92094 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.06 37.16 0.34 -1.04 16 2 C -0.08 -0.80 2.49 -90.50 -0.22 -1.03 16 3 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -0.98 5.38 -26.65 -0.14 -1.12 16 5 C 0.06 0.47 6.55 -3.84 -0.03 0.45 16 6 N -0.69 -6.47 6.84 -113.82 -0.78 -7.25 16 7 C 0.03 0.28 5.80 -3.84 -0.02 0.26 16 8 C 0.10 1.05 2.05 -67.63 -0.14 0.91 16 9 H 0.08 0.99 7.80 -51.93 -0.41 0.59 16 10 N -0.67 -8.60 5.60 -107.90 -0.60 -9.20 16 11 C 0.11 1.50 5.61 -4.97 -0.03 1.47 16 12 C -0.05 -0.82 5.39 -104.65 -0.56 -1.38 16 13 C -0.19 -3.30 9.70 -39.53 -0.38 -3.68 16 14 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 15 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 16 C 0.15 3.70 6.65 -39.10 -0.26 3.44 16 17 O -0.18 -5.19 9.76 0.03 0.00 -5.19 16 18 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 19 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 22 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C -0.19 -3.88 9.65 -39.39 -0.38 -4.26 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.85 7.69 -51.92 -0.40 0.45 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.34 2.75 8.90 -39.29 -0.35 2.40 16 35 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 36 H 0.07 0.82 7.49 -51.93 -0.39 0.43 16 37 H 0.34 4.63 8.45 -39.29 -0.33 4.30 16 38 H 0.03 0.48 7.41 -51.93 -0.38 0.10 16 39 H 0.08 1.00 8.00 -51.93 -0.42 0.59 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -29.84 353.43 -9.74 -39.59 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.03 Total: 8.84 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.39 Total: -23.01 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.62 Total: -41.16 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.84 -9.74 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325743070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.702 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds