Wall clock time and date at job start Tue Mar 31 2020 07:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.52748 * 2 1 4 4 C 1.53119 * 109.51787 * 120.12617 * 2 1 3 5 5 C 1.53037 * 109.27613 * 177.56006 * 4 2 1 6 6 N 1.46844 * 109.52573 * 300.82043 * 5 4 2 7 7 C 1.46841 * 111.20106 * 61.73969 * 6 5 4 8 8 C 1.53036 * 109.52434 * 298.26573 * 7 6 5 9 9 H 1.09002 * 109.50002 * 299.23542 * 8 7 6 10 10 N 1.46903 * 109.50727 * 179.11726 * 8 7 6 11 11 C 1.46903 * 110.99982 * 85.19056 * 10 8 7 12 12 C 1.50702 * 109.46933 * 180.02562 * 11 10 8 13 13 C 1.38322 * 119.96361 * 269.72282 * 12 11 10 14 14 C 1.38283 * 120.13521 * 179.76356 * 13 12 11 15 15 C 1.38120 * 120.06983 * 0.51789 * 14 13 12 16 16 C 1.38858 * 119.92987 * 359.74168 * 15 14 13 17 17 O 1.35750 * 120.07235 * 179.97438 * 16 15 14 18 18 C 1.34835 * 116.99660 * 354.49351 * 17 16 15 19 19 H 1.08001 * 119.99877 * 5.04850 * 18 17 16 20 20 C 1.38655 * 119.99600 * 185.05475 * 18 17 16 21 21 N 1.31549 * 120.00358 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99570 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46577 * 90.00119 * 22 20 18 24 24 H 1.48498 * 109.46715 * 210.00179 * 22 20 18 25 25 H 1.48497 * 109.46957 * 330.00158 * 22 20 18 26 26 C 1.38078 * 119.96206 * 90.00207 * 12 11 10 27 27 H 1.09003 * 109.47665 * 299.87632 * 1 2 3 28 28 H 1.09013 * 109.47050 * 59.87597 * 1 2 3 29 29 H 1.09003 * 109.47654 * 179.87109 * 1 2 3 30 30 H 1.09000 * 109.50275 * 297.49901 * 4 2 1 31 31 H 1.08999 * 109.50514 * 57.61894 * 4 2 1 32 32 H 1.09004 * 109.46567 * 60.83555 * 5 4 2 33 33 H 1.09000 * 109.46271 * 180.80101 * 5 4 2 34 34 H 1.00903 * 110.99946 * 185.84049 * 6 5 4 35 35 H 1.09003 * 109.46093 * 58.27152 * 7 6 5 36 36 H 1.08992 * 109.46702 * 178.25688 * 7 6 5 37 37 H 1.00904 * 110.99594 * 321.23789 * 10 8 7 38 38 H 1.09004 * 109.47176 * 300.00156 * 11 10 8 39 39 H 1.08999 * 109.46935 * 60.00584 * 11 10 8 40 40 H 1.07996 * 119.93145 * 0.02562 * 13 12 11 41 41 H 1.07994 * 119.96384 * 180.25583 * 14 13 12 42 42 H 1.08002 * 120.03677 * 179.71527 * 15 14 13 43 43 H 0.97000 * 120.00243 * 179.97438 * 21 20 18 44 44 H 1.07995 * 120.04026 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0415 -0.7244 1.2483 5 6 3.5707 -0.7745 1.2122 6 7 4.0102 -1.4789 0.0010 7 6 3.5708 -0.7760 -1.2111 8 6 2.0417 -0.7258 -1.2473 9 1 1.6447 -1.7407 -1.2664 10 7 1.6030 -0.0040 -2.4493 11 6 1.5334 -0.9044 -3.6080 12 6 1.0815 -0.1302 -4.8193 13 6 -0.2665 -0.0323 -5.1133 14 6 -0.6854 0.6814 -6.2212 15 6 0.2424 1.2899 -7.0438 16 6 1.5967 1.1889 -6.7544 17 8 2.5110 1.7854 -7.5612 18 6 2.0484 2.3632 -8.6882 19 1 0.9855 2.4093 -8.8743 20 6 2.9372 2.8978 -9.6083 21 7 4.2319 2.8411 -9.3820 22 14 2.2962 3.6977 -11.1701 23 1 2.0646 5.1440 -10.9263 24 1 3.2950 3.5325 -12.2566 25 1 1.0197 3.0521 -11.5688 26 6 2.0140 0.4759 -5.6377 27 1 -0.3634 0.5119 0.8911 28 1 -0.3634 0.5158 -0.8890 29 1 -0.3634 -1.0277 -0.0023 30 1 1.7160 -0.1878 2.1394 31 1 1.6445 -1.7393 1.2685 32 1 3.9674 0.2408 1.2059 33 1 3.9376 -1.3022 2.0926 34 1 5.0108 -1.6087 0.0012 35 1 3.9674 0.2393 -1.2059 36 1 3.9376 -1.3048 -2.0907 37 1 2.2055 0.7830 -2.6385 38 1 2.5188 -1.3308 -3.7965 39 1 0.8237 -1.7059 -3.4031 40 1 -0.9936 -0.5106 -4.4740 41 1 -1.7388 0.7595 -6.4459 42 1 -0.0851 1.8433 -7.9116 43 1 4.8537 3.2148 -10.0258 44 1 3.0666 0.3957 -5.4099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325743070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:36 Heat of formation + Delta-G solvation = -32.206232 kcal Electronic energy + Delta-G solvation = -22722.290790 eV Core-core repulsion = 19445.456925 eV Total energy + Delta-G solvation = -3276.833866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.95 seconds Orbital eigenvalues (eV) -40.84605 -40.16436 -38.44101 -36.11366 -34.34427 -34.21048 -32.35720 -30.83377 -29.76689 -27.91952 -27.34004 -25.76706 -23.41338 -23.05478 -22.82181 -22.28787 -20.74983 -19.45886 -18.76704 -17.58180 -16.73892 -16.65872 -16.13584 -16.06143 -15.71668 -15.55711 -15.41315 -15.23934 -14.98882 -14.86993 -14.24532 -14.18740 -13.83247 -13.58561 -13.38839 -13.15211 -12.95028 -12.85310 -12.66666 -12.43993 -12.29857 -12.22082 -12.16223 -12.08246 -11.58718 -11.39545 -11.25856 -11.11142 -10.80341 -9.73124 -9.50548 -9.26978 -8.96851 -8.47097 -6.15449 0.53146 0.77223 1.34466 1.43858 1.51999 2.17515 2.78063 3.04668 3.22404 3.42846 3.56645 3.79348 3.88492 4.00395 4.05761 4.13157 4.25763 4.33821 4.34173 4.43710 4.55193 4.63249 4.63649 4.70192 4.74246 4.76633 4.84788 4.90460 4.93804 5.07347 5.11841 5.13997 5.19922 5.29232 5.32968 5.48835 5.58320 5.66871 5.74736 5.81447 5.88257 6.02963 6.16385 6.26196 6.35205 6.42987 6.97965 7.79362 8.76306 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.003029 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.125198 B = 9242.703281 C = 9962.909602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.078 4.078 3 H 0.056 0.944 4 C -0.109 4.109 5 C 0.054 3.946 6 N -0.690 5.690 7 C 0.030 3.970 8 C 0.100 3.900 9 H 0.082 0.918 10 N -0.673 5.673 11 C 0.113 3.887 12 C -0.036 4.036 13 C -0.169 4.169 14 C -0.073 4.073 15 C -0.245 4.245 16 C 0.113 3.887 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.195 4.195 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.026 0.974 33 H 0.088 0.912 34 H 0.349 0.651 35 H 0.025 0.975 36 H 0.066 0.934 37 H 0.337 0.663 38 H 0.036 0.964 39 H 0.096 0.904 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.117 0.883 43 H 0.272 0.728 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 -7.677 19.142 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.075 4.075 6 N -0.322 5.322 7 C -0.101 4.101 8 C -0.010 4.010 9 H 0.100 0.900 10 N -0.302 5.302 11 C -0.016 4.016 12 C -0.036 4.036 13 C -0.188 4.188 14 C -0.091 4.091 15 C -0.264 4.264 16 C 0.063 3.937 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.560 5.560 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.215 4.215 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.002 -8.102 19.228 22.008 hybrid contribution 1.887 1.280 -1.319 2.634 sum -5.116 -6.822 17.908 19.835 Atomic orbital electron populations 1.21625 0.94153 1.01553 1.01547 1.21103 0.96740 0.98488 0.93418 0.92577 1.21651 0.94439 1.01198 0.97407 1.22024 0.96337 0.96367 0.92778 1.60265 1.19280 1.51101 1.01586 1.22647 0.97563 0.96361 0.93549 1.21624 0.91594 0.97860 0.89932 0.89964 1.60684 1.56494 1.10271 1.02790 1.20806 0.99929 0.94057 0.86763 1.19559 0.93026 0.96282 0.94763 1.20939 0.94993 1.03909 0.98987 1.21153 0.99320 0.94930 0.93683 1.21302 0.92629 1.08341 1.04146 1.19868 0.89787 0.92283 0.91784 1.83936 1.34274 1.63985 1.31957 1.21811 0.94400 1.36823 0.95879 0.88207 1.26574 0.95078 0.97859 1.02530 1.70180 1.02859 1.45222 1.37785 0.84599 0.78417 0.78416 0.74857 1.18799 1.19579 1.17677 1.20228 0.99530 1.04798 0.96980 0.92645 0.92669 0.92967 0.90083 0.91260 0.95564 0.89323 0.83249 0.95725 0.91586 0.84490 0.94612 0.88594 0.83831 0.83826 0.86538 0.91894 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.06 71.98 0.65 -1.68 16 2 C -0.08 -1.42 2.49 -10.72 -0.03 -1.44 16 3 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.11 -1.61 5.38 30.65 0.16 -1.44 16 5 C 0.05 0.79 6.55 86.33 0.57 1.36 16 6 N -0.69 -11.86 6.84 -514.03 -3.52 -15.37 16 7 C 0.03 0.61 5.80 86.33 0.50 1.11 16 8 C 0.10 2.03 2.05 44.97 0.09 2.12 16 9 H 0.08 1.74 7.80 -2.39 -0.02 1.72 16 10 N -0.67 -16.09 5.60 -495.29 -2.77 -18.87 16 11 C 0.11 2.92 5.61 85.56 0.48 3.40 16 12 C -0.04 -1.20 5.39 -19.88 -0.11 -1.31 16 13 C -0.17 -5.35 9.70 22.30 0.22 -5.13 16 14 C -0.07 -2.53 10.04 22.25 0.22 -2.31 16 15 C -0.24 -10.82 9.17 22.39 0.21 -10.62 16 16 C 0.11 5.69 6.65 22.58 0.15 5.84 16 17 O -0.23 -14.32 9.76 -22.79 -0.22 -14.54 16 18 C -0.41 -24.38 9.49 67.92 0.64 -23.73 16 19 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 20 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 21 N -0.92 -57.13 13.67 21.61 0.30 -56.83 16 22 Si 1.02 43.28 29.55 68.60 2.03 45.31 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 26 C -0.20 -8.38 9.65 22.39 0.22 -8.16 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 1.17 7.69 -2.38 -0.02 1.15 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.35 5.11 8.90 -89.69 -0.80 4.31 16 35 H 0.02 0.53 8.12 -2.39 -0.02 0.51 16 36 H 0.07 1.42 7.49 -2.39 -0.02 1.40 16 37 H 0.34 8.90 8.45 -89.69 -0.76 8.14 16 38 H 0.04 0.94 7.41 -2.38 -0.02 0.92 16 39 H 0.10 2.16 8.00 -2.39 -0.02 2.14 16 40 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 41 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -68.68 353.43 -0.30 -68.99 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.56 Total: 34.19 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 4.44 Total: -42.87 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -6.00 Total: -91.08 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.22 Total: -14.54 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -68.68 -0.30 -68.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325743070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.782 kcal (2) G-P(sol) polarization free energy of solvation -68.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.95 seconds