Wall clock time and date at job start Tue Mar 31 2020 08:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46975 * 2 1 4 4 N 1.46904 * 109.47166 * 119.99530 * 2 1 3 5 5 C 1.46897 * 111.00235 * 275.00422 * 4 2 1 6 6 C 1.50696 * 109.47187 * 179.97438 * 5 4 2 7 7 C 1.38319 * 119.96661 * 269.72332 * 6 5 4 8 8 C 1.38280 * 120.14186 * 179.76652 * 7 6 5 9 9 C 1.38118 * 120.06708 * 0.50900 * 8 7 6 10 10 C 1.38861 * 119.92753 * 359.74831 * 9 8 7 11 11 O 1.35760 * 120.06537 * 179.97438 * 10 9 8 12 12 C 1.34823 * 117.00053 * 354.48028 * 11 10 9 13 13 H 1.08004 * 120.00258 * 5.06258 * 12 11 10 14 14 C 1.38655 * 120.00206 * 185.06285 * 12 11 10 15 15 N 1.31558 * 120.00341 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99602 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47182 * 90.00320 * 16 14 12 18 18 H 1.48504 * 109.47118 * 209.99896 * 16 14 12 19 19 H 1.48501 * 109.47110 * 329.99838 * 16 14 12 20 20 C 1.38077 * 119.96664 * 89.99678 * 6 5 4 21 21 C 1.53004 * 109.47346 * 239.99894 * 2 1 3 22 22 H 1.09002 * 109.90307 * 304.29769 * 21 2 1 23 23 C 1.53992 * 109.91615 * 65.39943 * 21 2 1 24 24 C 1.54593 * 105.13655 * 120.77586 * 23 21 2 25 25 C 1.54937 * 102.92619 * 21.95740 * 24 23 21 26 26 N 1.47903 * 109.91556 * 183.19652 * 21 2 1 27 27 H 1.08994 * 109.47423 * 299.99791 * 1 2 3 28 28 H 1.08999 * 109.47357 * 60.00731 * 1 2 3 29 29 H 1.09005 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.00896 * 110.99820 * 38.95874 * 4 2 1 31 31 H 1.09006 * 109.46918 * 300.00218 * 5 4 2 32 32 H 1.08998 * 109.46873 * 59.99641 * 5 4 2 33 33 H 1.08011 * 119.92917 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.96538 * 180.25502 * 8 7 6 35 35 H 1.07995 * 120.03824 * 179.72196 * 9 8 7 36 36 H 0.97001 * 119.99839 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.03599 * 359.96466 * 20 6 5 38 38 H 1.08998 * 110.30689 * 239.68773 * 23 21 2 39 39 H 1.08998 * 110.30978 * 1.76516 * 23 21 2 40 40 H 1.09003 * 110.72258 * 140.31684 * 24 23 21 41 41 H 1.09007 * 110.72831 * 263.59754 * 24 23 21 42 42 H 1.09003 * 110.66737 * 81.01756 * 25 24 23 43 43 H 1.08995 * 110.66886 * 203.98304 * 25 24 23 44 44 H 1.00903 * 110.99676 * 335.62810 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5217 3.5561 7 6 1.6927 -1.1471 4.4056 8 6 2.1523 -1.8352 5.5135 9 6 3.5062 -1.8910 5.7809 10 6 4.4064 -1.2596 4.9328 11 8 5.7378 -1.3122 5.1933 12 6 6.1127 -1.8944 6.3501 13 1 5.3740 -2.3651 6.9820 14 6 7.4465 -1.8890 6.7286 15 7 7.8124 -2.4575 7.8572 16 14 8.7241 -1.0742 5.6360 17 1 8.8664 0.3530 6.0204 18 1 10.0289 -1.7638 5.8012 19 1 8.2925 -1.1644 4.2179 20 6 3.9420 -0.5738 3.8179 21 6 2.0400 -0.7213 -1.2492 22 1 1.6193 -1.7257 -1.2956 23 6 1.6467 0.0710 -2.5098 24 6 2.9841 0.4100 -3.2072 25 6 3.9515 -0.6590 -2.6399 26 7 3.5170 -0.7945 -1.2210 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.4496 -1.4978 1.4101 31 1 2.7588 1.0464 2.1182 32 1 1.0870 0.6164 2.5525 33 1 0.6331 -1.1008 4.2014 34 1 1.4516 -2.3260 6.1727 35 1 3.8643 -2.4247 6.6488 36 1 8.7457 -2.4539 8.1218 37 1 4.6397 -0.0820 3.1563 38 1 1.0243 -0.5411 -3.1624 39 1 1.1202 0.9845 -2.2335 40 1 2.8910 0.3110 -4.2887 41 1 3.3163 1.4127 -2.9378 42 1 3.8345 -1.6040 -3.1704 43 1 4.9835 -0.3127 -2.6965 44 1 3.9047 -0.0578 -0.6508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326038224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:23 Heat of formation + Delta-G solvation = -2.996106 kcal Electronic energy + Delta-G solvation = -22708.179868 eV Core-core repulsion = 19432.612648 eV Total energy + Delta-G solvation = -3275.567219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.48573 -39.04420 -37.11346 -35.73395 -32.38112 -32.08371 -30.18629 -29.65633 -28.87034 -27.67259 -25.40640 -24.62067 -22.37372 -21.74707 -21.60527 -20.55966 -19.99773 -17.70098 -17.17463 -16.34339 -15.89293 -15.38418 -15.06418 -14.76027 -14.61721 -14.12361 -13.96593 -13.87496 -13.69740 -13.42964 -13.25254 -12.77034 -12.58292 -12.34495 -12.16107 -11.96484 -11.80981 -11.61056 -11.48537 -11.33587 -11.19753 -11.08542 -10.81311 -10.76302 -10.68762 -10.49509 -10.09163 -9.34173 -8.83516 -8.61736 -8.30924 -8.07796 -7.32665 -6.37072 -4.03625 2.08200 2.31135 3.26140 3.29449 3.45823 3.93512 4.25931 4.28591 4.49638 4.55214 4.68364 4.76006 4.83110 4.90013 4.97642 5.11762 5.14455 5.27042 5.29759 5.33321 5.41667 5.47882 5.54052 5.59340 5.66009 5.70686 5.75006 5.82854 5.86366 5.88642 5.93651 6.06000 6.17118 6.32308 6.58270 6.75092 6.84316 7.07678 7.17229 7.24993 7.35661 7.39263 7.49387 7.65168 7.85192 8.08804 8.98671 9.62088 10.70755 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.003608 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.081864 B = 7759.477062 C = 9136.346194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 H 0.074 0.926 4 N -0.666 5.666 5 C 0.107 3.893 6 C -0.049 4.049 7 C -0.199 4.199 8 C -0.078 4.078 9 C -0.219 4.219 10 C 0.158 3.842 11 O -0.218 6.218 12 C -0.388 4.388 13 H 0.106 0.894 14 C 0.063 3.937 15 N -0.882 5.882 16 Si 0.904 3.096 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.258 1.258 20 C -0.164 4.164 21 C 0.086 3.914 22 H 0.081 0.919 23 C -0.149 4.149 24 C -0.159 4.159 25 C 0.037 3.963 26 N -0.650 5.650 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.344 0.656 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.279 0.721 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.624 6.321 -18.578 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.032 4.032 3 H 0.093 0.907 4 N -0.296 5.296 5 C -0.021 4.021 6 C -0.049 4.049 7 C -0.218 4.218 8 C -0.096 4.096 9 C -0.239 4.239 10 C 0.106 3.894 11 O -0.123 6.123 12 C -0.464 4.464 13 H 0.123 0.877 14 C -0.140 4.140 15 N -0.520 5.520 16 Si 0.730 3.270 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.182 1.182 20 C -0.183 4.183 21 C -0.025 4.025 22 H 0.099 0.901 23 C -0.188 4.188 24 C -0.198 4.198 25 C -0.093 4.093 26 N -0.278 5.278 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.476 5.681 -18.629 23.129 hybrid contribution -0.642 1.246 -0.144 1.410 sum -13.118 6.928 -18.773 23.927 Atomic orbital electron populations 1.22519 0.97102 1.02424 1.02185 1.21873 0.92700 0.97577 0.91047 0.90737 1.60491 1.57372 1.09176 1.02569 1.20818 0.98668 0.94370 0.88262 1.19128 0.92674 0.98267 0.94861 1.20475 0.97837 1.05314 0.98214 1.20732 0.94848 0.97602 0.96425 1.21293 0.93129 1.06334 1.03122 1.19100 0.83866 0.93095 0.93340 1.83578 1.18350 1.70820 1.39582 1.20761 0.95198 1.34649 0.95783 0.87706 1.24456 0.97026 0.96491 0.96024 1.69650 1.18514 1.42772 1.21079 0.86191 0.79603 0.79360 0.81842 1.19958 1.20831 1.18209 1.20006 0.94606 1.05243 0.98480 1.22348 0.89231 0.98776 0.92122 0.90081 1.22914 0.97740 1.00588 0.97594 1.23121 0.96151 0.99927 1.00584 1.23251 0.98182 0.97932 0.89895 1.62867 1.05213 1.51814 1.07872 0.92462 0.92059 0.92148 0.83671 0.90766 0.95001 0.87985 0.87361 0.85099 0.91118 0.86514 0.91415 0.91419 0.91235 0.91728 0.90513 0.90977 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 8.97 37.16 0.33 -1.11 16 2 C 0.08 0.74 1.80 -67.71 -0.12 0.62 16 3 H 0.07 0.71 7.80 -51.93 -0.40 0.31 16 4 N -0.67 -7.97 6.01 -107.99 -0.65 -8.62 16 5 C 0.11 1.39 5.61 -4.98 -0.03 1.36 16 6 C -0.05 -0.82 5.39 -104.65 -0.56 -1.38 16 7 C -0.20 -3.29 9.70 -39.54 -0.38 -3.68 16 8 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 9 C -0.22 -4.81 9.17 -39.39 -0.36 -5.17 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 O -0.22 -5.86 8.59 0.04 0.00 -5.86 16 12 C -0.39 -11.12 9.95 30.89 0.31 -10.81 16 13 H 0.11 3.06 5.44 -52.48 -0.29 2.78 16 14 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 15 N -0.88 -25.82 13.96 55.48 0.77 -25.05 16 16 Si 0.90 22.03 28.62 -169.99 -4.86 17.17 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.16 -3.29 9.65 -39.40 -0.38 -3.67 16 21 C 0.09 0.83 3.14 -66.64 -0.21 0.62 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 23 C -0.15 -1.15 6.01 -25.38 -0.15 -1.30 16 24 C -0.16 -1.21 7.06 -24.87 -0.18 -1.39 16 25 C 0.04 0.34 7.56 -1.63 -0.01 0.33 16 26 N -0.65 -7.32 7.21 -102.76 -0.74 -8.06 16 27 H 0.06 0.47 7.45 -51.93 -0.39 0.08 16 28 H 0.06 0.42 6.87 -51.93 -0.36 0.06 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.34 4.18 8.46 -39.29 -0.33 3.85 16 31 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 32 H 0.03 0.37 7.38 -51.93 -0.38 -0.01 16 33 H 0.10 1.42 8.06 -52.48 -0.42 0.99 16 34 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 36 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.49 6.80 -51.93 -0.35 0.13 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.34 4.01 8.40 -39.29 -0.33 3.68 16 LS Contribution 353.58 15.07 5.33 5.33 Total: -1.00 -29.51 353.58 -9.56 -39.07 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.91 Total: 8.30 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -2.50 Total: -22.27 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.62 Total: -41.73 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: 0.00 Total: -5.86 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.51 -9.56 -39.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326038224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.069 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds