Wall clock time and date at job start Tue Mar 31 2020 08:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46975 * 2 1 4 4 N 1.46904 * 109.47166 * 119.99530 * 2 1 3 5 5 C 1.46897 * 111.00235 * 275.00422 * 4 2 1 6 6 C 1.50696 * 109.47187 * 179.97438 * 5 4 2 7 7 C 1.38319 * 119.96661 * 269.72332 * 6 5 4 8 8 C 1.38280 * 120.14186 * 179.76652 * 7 6 5 9 9 C 1.38118 * 120.06708 * 0.50900 * 8 7 6 10 10 C 1.38861 * 119.92753 * 359.74831 * 9 8 7 11 11 O 1.35760 * 120.06537 * 179.97438 * 10 9 8 12 12 C 1.34823 * 117.00053 * 354.48028 * 11 10 9 13 13 H 1.08004 * 120.00258 * 5.06258 * 12 11 10 14 14 C 1.38655 * 120.00206 * 185.06285 * 12 11 10 15 15 N 1.31558 * 120.00341 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99602 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47182 * 90.00320 * 16 14 12 18 18 H 1.48504 * 109.47118 * 209.99896 * 16 14 12 19 19 H 1.48501 * 109.47110 * 329.99838 * 16 14 12 20 20 C 1.38077 * 119.96664 * 89.99678 * 6 5 4 21 21 C 1.53004 * 109.47346 * 239.99894 * 2 1 3 22 22 H 1.09002 * 109.90307 * 304.29769 * 21 2 1 23 23 C 1.53992 * 109.91615 * 65.39943 * 21 2 1 24 24 C 1.54593 * 105.13655 * 120.77586 * 23 21 2 25 25 C 1.54937 * 102.92619 * 21.95740 * 24 23 21 26 26 N 1.47903 * 109.91556 * 183.19652 * 21 2 1 27 27 H 1.08994 * 109.47423 * 299.99791 * 1 2 3 28 28 H 1.08999 * 109.47357 * 60.00731 * 1 2 3 29 29 H 1.09005 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.00896 * 110.99820 * 38.95874 * 4 2 1 31 31 H 1.09006 * 109.46918 * 300.00218 * 5 4 2 32 32 H 1.08998 * 109.46873 * 59.99641 * 5 4 2 33 33 H 1.08011 * 119.92917 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.96538 * 180.25502 * 8 7 6 35 35 H 1.07995 * 120.03824 * 179.72196 * 9 8 7 36 36 H 0.97001 * 119.99839 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.03599 * 359.96466 * 20 6 5 38 38 H 1.08998 * 110.30689 * 239.68773 * 23 21 2 39 39 H 1.08998 * 110.30978 * 1.76516 * 23 21 2 40 40 H 1.09003 * 110.72258 * 140.31684 * 24 23 21 41 41 H 1.09007 * 110.72831 * 263.59754 * 24 23 21 42 42 H 1.09003 * 110.66737 * 81.01756 * 25 24 23 43 43 H 1.08995 * 110.66886 * 203.98304 * 25 24 23 44 44 H 1.00903 * 110.99676 * 335.62810 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5217 3.5561 7 6 1.6927 -1.1471 4.4056 8 6 2.1523 -1.8352 5.5135 9 6 3.5062 -1.8910 5.7809 10 6 4.4064 -1.2596 4.9328 11 8 5.7378 -1.3122 5.1933 12 6 6.1127 -1.8944 6.3501 13 1 5.3740 -2.3651 6.9820 14 6 7.4465 -1.8890 6.7286 15 7 7.8124 -2.4575 7.8572 16 14 8.7241 -1.0742 5.6360 17 1 8.8664 0.3530 6.0204 18 1 10.0289 -1.7638 5.8012 19 1 8.2925 -1.1644 4.2179 20 6 3.9420 -0.5738 3.8179 21 6 2.0400 -0.7213 -1.2492 22 1 1.6193 -1.7257 -1.2956 23 6 1.6467 0.0710 -2.5098 24 6 2.9841 0.4100 -3.2072 25 6 3.9515 -0.6590 -2.6399 26 7 3.5170 -0.7945 -1.2210 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.4496 -1.4978 1.4101 31 1 2.7588 1.0464 2.1182 32 1 1.0870 0.6164 2.5525 33 1 0.6331 -1.1008 4.2014 34 1 1.4516 -2.3260 6.1727 35 1 3.8643 -2.4247 6.6488 36 1 8.7457 -2.4539 8.1218 37 1 4.6397 -0.0820 3.1563 38 1 1.0243 -0.5411 -3.1624 39 1 1.1202 0.9845 -2.2335 40 1 2.8910 0.3110 -4.2887 41 1 3.3163 1.4127 -2.9378 42 1 3.8345 -1.6040 -3.1704 43 1 4.9835 -0.3127 -2.6965 44 1 3.9047 -0.0578 -0.6508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326038224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:21 Heat of formation + Delta-G solvation = -23.223632 kcal Electronic energy + Delta-G solvation = -22709.056999 eV Core-core repulsion = 19432.612648 eV Total energy + Delta-G solvation = -3276.444351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90838 -40.07863 -38.62140 -36.79914 -34.45139 -33.23894 -31.23196 -30.84926 -30.14611 -28.35520 -27.28586 -25.92708 -23.28148 -23.17370 -22.33978 -22.07206 -20.80612 -19.63768 -18.85822 -17.25339 -16.85979 -16.66946 -16.59395 -16.04521 -15.68259 -15.61474 -15.40587 -14.90193 -14.69414 -14.62322 -14.49259 -14.18650 -13.99265 -13.70413 -13.51641 -12.99502 -12.86991 -12.62264 -12.50138 -12.46238 -12.36522 -12.33598 -12.09317 -11.92158 -11.85572 -11.67686 -11.36180 -11.20838 -10.90125 -9.68062 -9.40950 -9.15870 -9.00013 -8.49200 -6.21534 0.53228 0.72231 1.31267 1.35470 1.52849 2.29173 2.74578 3.03501 3.09656 3.29453 3.59338 3.83587 3.89996 4.00062 4.09923 4.13146 4.24065 4.30861 4.35070 4.43021 4.47637 4.59810 4.63764 4.66064 4.68132 4.76447 4.87841 4.89193 5.01808 5.04140 5.06165 5.12575 5.20345 5.28061 5.30832 5.38494 5.41848 5.69974 5.76279 5.81129 5.93638 6.00288 6.20913 6.30291 6.52095 6.61910 6.85651 7.61762 8.62687 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.003608 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.081864 B = 7759.477062 C = 9136.346194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 H 0.077 0.923 4 N -0.679 5.679 5 C 0.115 3.885 6 C -0.038 4.038 7 C -0.174 4.174 8 C -0.077 4.077 9 C -0.240 4.240 10 C 0.118 3.882 11 O -0.247 6.247 12 C -0.398 4.398 13 H 0.080 0.920 14 C 0.010 3.990 15 N -0.925 5.925 16 Si 0.970 3.030 17 H -0.264 1.264 18 H -0.266 1.266 19 H -0.265 1.265 20 C -0.169 4.169 21 C 0.087 3.913 22 H 0.069 0.931 23 C -0.143 4.143 24 C -0.153 4.153 25 C 0.034 3.966 26 N -0.674 5.674 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.344 0.656 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.284 0.716 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.193 7.891 -21.140 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.025 4.025 3 H 0.095 0.905 4 N -0.310 5.310 5 C -0.014 4.014 6 C -0.038 4.038 7 C -0.193 4.193 8 C -0.095 4.095 9 C -0.260 4.260 10 C 0.069 3.931 11 O -0.155 6.155 12 C -0.475 4.475 13 H 0.098 0.902 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.792 3.208 17 H -0.189 1.189 18 H -0.191 1.191 19 H -0.190 1.190 20 C -0.189 4.189 21 C -0.024 4.024 22 H 0.087 0.913 23 C -0.182 4.182 24 C -0.192 4.192 25 C -0.095 4.095 26 N -0.302 5.302 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.094 7.257 -21.215 27.029 hybrid contribution -0.177 0.752 0.530 0.937 sum -15.271 8.008 -20.685 26.929 Atomic orbital electron populations 1.22449 0.95477 1.02710 1.02960 1.21855 0.93855 0.97197 0.89620 0.90509 1.60422 1.58299 1.09349 1.02910 1.20767 0.99824 0.93915 0.86872 1.19611 0.91183 0.97019 0.96005 1.21015 1.00024 1.02086 0.96144 1.21096 0.93455 0.97453 0.97511 1.21317 0.95027 1.07007 1.02624 1.19654 0.83114 0.95100 0.95222 1.83519 1.20411 1.72561 1.39035 1.20712 0.95251 1.34983 0.96520 0.90224 1.25263 0.98858 0.97258 0.97438 1.69731 1.19303 1.44787 1.22783 0.85232 0.77421 0.78859 0.79298 1.18921 1.19108 1.18962 1.20257 0.96422 1.04830 0.97363 1.22334 0.88329 0.98524 0.93221 0.91329 1.22871 0.97857 1.00815 0.96687 1.23074 0.95547 0.99340 1.01208 1.23273 0.98743 0.98414 0.89097 1.62861 1.06392 1.51956 1.08958 0.92209 0.90755 0.92113 0.83717 0.90467 0.92426 0.83520 0.84303 0.87687 0.90597 0.86355 0.90714 0.90353 0.90074 0.91526 0.90884 0.90913 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.97 71.98 0.65 -1.46 16 2 C 0.08 1.34 1.80 44.92 0.08 1.42 16 3 H 0.08 1.21 7.80 -2.38 -0.02 1.19 16 4 N -0.68 -14.24 6.01 -495.57 -2.98 -17.22 16 5 C 0.11 2.54 5.61 85.56 0.48 3.02 16 6 C -0.04 -1.16 5.39 -19.88 -0.11 -1.27 16 7 C -0.17 -5.07 9.70 22.30 0.22 -4.85 16 8 C -0.08 -2.67 10.04 22.25 0.22 -2.45 16 9 C -0.24 -10.86 9.17 22.39 0.21 -10.66 16 10 C 0.12 5.71 6.65 22.58 0.15 5.86 16 11 O -0.25 -13.97 8.59 -22.78 -0.20 -14.16 16 12 C -0.40 -24.20 9.95 67.92 0.68 -23.53 16 13 H 0.08 5.06 5.44 -2.91 -0.02 5.05 16 14 C 0.01 0.59 5.49 84.83 0.47 1.05 16 15 N -0.92 -56.49 13.96 21.61 0.30 -56.19 16 16 Si 0.97 46.82 28.62 68.60 1.96 48.78 16 17 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 20 C -0.17 -6.74 9.65 22.39 0.22 -6.53 16 21 C 0.09 1.48 3.14 45.06 0.14 1.62 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 C -0.14 -1.80 6.01 31.47 0.19 -1.61 16 24 C -0.15 -1.98 7.06 31.80 0.22 -1.76 16 25 C 0.03 0.58 7.56 86.56 0.65 1.24 16 26 N -0.67 -14.35 7.21 -479.03 -3.45 -17.81 16 27 H 0.06 0.70 7.45 -2.39 -0.02 0.68 16 28 H 0.07 0.71 6.87 -2.39 -0.02 0.70 16 29 H 0.06 0.74 8.13 -2.38 -0.02 0.72 16 30 H 0.34 7.22 8.46 -89.70 -0.76 6.46 16 31 H 0.08 1.72 8.00 -2.38 -0.02 1.70 16 32 H 0.06 1.03 7.38 -2.39 -0.02 1.01 16 33 H 0.15 3.11 8.06 -2.90 -0.02 3.09 16 34 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.11 5.23 5.64 -2.91 -0.02 5.22 16 36 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 37 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.84 6.80 -2.39 -0.02 0.83 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.34 7.53 8.40 -89.69 -0.75 6.77 16 Total: -1.00 -67.76 353.58 -0.41 -68.17 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.51 Total: 28.32 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 4.46 Total: -39.89 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -6.13 Total: -91.21 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.20 Total: -14.16 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.96 Total: 48.78 kcal Total: -67.76 -0.41 -68.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326038224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.944 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds