Wall clock time and date at job start Tue Mar 31 2020 08:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47498 * 2 1 4 4 N 1.46908 * 109.46821 * 240.00204 * 2 1 3 5 5 C 1.46898 * 110.99760 * 85.00030 * 4 2 1 6 6 C 1.50703 * 109.47052 * 180.02562 * 5 4 2 7 7 C 1.38326 * 119.96036 * 269.72169 * 6 5 4 8 8 C 1.38280 * 120.13593 * 180.27023 * 7 6 5 9 9 C 1.38125 * 120.06813 * 0.02562 * 8 7 6 10 10 C 1.38857 * 119.92941 * 359.97438 * 9 8 7 11 11 O 1.35759 * 120.06714 * 179.97438 * 10 9 8 12 12 C 1.34831 * 116.99718 * 354.48542 * 11 10 9 13 13 H 1.07998 * 120.00057 * 5.06548 * 12 11 10 14 14 C 1.38654 * 119.99581 * 185.05723 * 12 11 10 15 15 N 1.31561 * 120.00320 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46696 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46827 * 119.99911 * 16 14 12 19 19 H 1.48499 * 109.47147 * 240.00412 * 16 14 12 20 20 C 1.38074 * 119.96544 * 90.00117 * 6 5 4 21 21 C 1.53002 * 109.47271 * 120.00854 * 2 1 3 22 22 H 1.09001 * 109.90687 * 58.89136 * 21 2 1 23 23 C 1.53994 * 109.91496 * 179.97438 * 21 2 1 24 24 C 1.54602 * 105.13662 * 120.57598 * 23 21 2 25 25 C 1.54930 * 102.92330 * 21.95431 * 24 23 21 26 26 N 1.47904 * 109.91391 * 297.58402 * 21 2 1 27 27 H 1.09000 * 109.46642 * 299.99819 * 1 2 3 28 28 H 1.08995 * 109.47195 * 59.99226 * 1 2 3 29 29 H 1.08995 * 109.47498 * 179.97438 * 1 2 3 30 30 H 1.00901 * 111.00057 * 321.04933 * 4 2 1 31 31 H 1.08996 * 109.47398 * 60.00229 * 5 4 2 32 32 H 1.08994 * 109.47225 * 300.00019 * 5 4 2 33 33 H 1.07995 * 119.93590 * 0.26096 * 7 6 5 34 34 H 1.07998 * 119.96668 * 180.02562 * 8 7 6 35 35 H 1.08000 * 120.03457 * 179.97438 * 9 8 7 36 36 H 0.96999 * 119.99759 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.03806 * 359.69747 * 20 6 5 38 38 H 1.09000 * 110.30821 * 239.48653 * 23 21 2 39 39 H 1.08998 * 110.31225 * 1.55854 * 23 21 2 40 40 H 1.09003 * 110.72107 * 140.31628 * 24 23 21 41 41 H 1.08999 * 110.72153 * 263.41469 * 24 23 21 42 42 H 1.09000 * 110.66831 * 81.01884 * 25 24 23 43 43 H 1.09001 * 110.67204 * 204.14870 * 25 24 23 44 44 H 1.00900 * 111.00081 * 335.83572 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5872 -0.5217 -3.5562 7 6 3.9439 -0.5691 -3.8216 8 6 4.4106 -1.2463 -4.9332 9 6 3.5227 -1.8773 -5.7824 10 6 2.1602 -1.8316 -5.5186 11 8 1.2849 -2.4504 -6.3517 12 6 1.7910 -2.9938 -7.4771 13 1 2.8582 -2.9973 -7.6425 14 6 0.9411 -3.5481 -8.4221 15 7 -0.3590 -3.5435 -8.2208 16 14 1.6422 -4.3017 -9.9810 17 1 3.1223 -4.1816 -9.9665 18 1 1.2631 -5.7358 -10.0514 19 1 1.0986 -3.5872 -11.1640 20 6 1.6945 -1.1508 -4.4011 21 6 2.0401 -0.7214 1.2491 22 1 1.6646 -1.7446 1.2661 23 6 3.5799 -0.7279 1.2591 24 6 3.9783 0.0035 2.5616 25 6 2.7105 -0.1389 3.4406 26 7 1.6009 0.0010 2.4627 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.4495 -1.4979 -1.4102 31 1 2.7588 1.0462 -2.1183 32 1 1.0870 0.6164 -2.5525 33 1 4.6401 -0.0760 -3.1594 34 1 5.4705 -1.2819 -5.1375 35 1 3.8878 -2.4058 -6.6507 36 1 -0.9534 -3.9317 -8.8818 37 1 0.6354 -1.1137 -4.1931 38 1 3.9539 -1.7517 1.2707 39 1 3.9662 -0.1946 0.3906 40 1 4.8313 -0.4849 3.0328 41 1 4.1976 1.0526 2.3631 42 1 2.6812 -1.1185 3.9177 43 1 2.6683 0.6548 4.1865 44 1 1.4186 0.9723 2.2593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326038225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:27 Heat of formation + Delta-G solvation = -6.714932 kcal Electronic energy + Delta-G solvation = -22574.856770 eV Core-core repulsion = 19299.128290 eV Total energy + Delta-G solvation = -3275.728480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.46656 -38.96044 -37.01036 -35.69031 -32.34318 -31.94245 -30.20459 -29.40756 -28.67106 -27.87251 -25.49320 -24.56009 -22.38236 -21.58107 -21.48026 -20.72394 -20.13770 -17.68393 -17.04343 -16.25575 -15.70169 -15.30062 -15.17687 -14.96069 -14.43415 -14.19592 -13.96374 -13.79949 -13.57183 -13.46138 -13.03223 -12.82060 -12.54396 -12.38299 -12.13681 -11.84468 -11.70628 -11.54704 -11.32913 -11.24470 -11.18693 -10.89729 -10.80354 -10.69578 -10.61270 -10.49293 -10.38084 -9.33412 -8.84580 -8.83310 -8.39905 -8.04149 -7.21823 -6.44109 -4.03323 2.10885 2.39922 3.12524 3.14037 3.19544 3.85757 3.97102 4.36991 4.59571 4.62940 4.73459 4.77369 4.92391 5.05524 5.10598 5.15289 5.22745 5.30823 5.38742 5.40277 5.54584 5.63497 5.66802 5.69994 5.77227 5.81467 5.88136 5.97015 5.99269 6.03113 6.10419 6.20317 6.22227 6.33776 6.60404 6.66872 6.91560 7.03233 7.08375 7.16745 7.28681 7.39543 7.44295 7.47587 7.83493 8.01071 9.01950 9.72374 10.74201 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030378 B = 0.002835 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.497327 B = 9874.941874 C =10377.275160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.073 0.927 4 N -0.675 5.675 5 C 0.108 3.892 6 C -0.047 4.047 7 C -0.189 4.189 8 C -0.077 4.077 9 C -0.231 4.231 10 C 0.153 3.847 11 O -0.180 6.180 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.038 3.962 15 N -0.864 5.864 16 Si 0.940 3.060 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.184 4.184 21 C 0.084 3.916 22 H 0.084 0.916 23 C -0.134 4.134 24 C -0.162 4.162 25 C 0.042 3.958 26 N -0.670 5.670 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.347 0.653 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.269 0.731 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 7.751 17.603 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.030 4.030 3 H 0.091 0.909 4 N -0.306 5.306 5 C -0.021 4.021 6 C -0.047 4.047 7 C -0.208 4.208 8 C -0.096 4.096 9 C -0.251 4.251 10 C 0.099 3.901 11 O -0.084 6.084 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.500 5.500 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.204 4.204 21 C -0.026 4.026 22 H 0.102 0.898 23 C -0.173 4.173 24 C -0.201 4.201 25 C -0.088 4.088 26 N -0.297 5.297 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.166 0.834 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.855 7.193 17.929 20.186 hybrid contribution 0.206 0.240 -1.493 1.526 sum 6.061 7.433 16.436 19.030 Atomic orbital electron populations 1.22463 0.96693 1.02644 1.02104 1.21791 0.93112 0.97407 0.90703 0.90897 1.60535 1.57419 1.09707 1.02974 1.20802 0.99070 0.94140 0.88044 1.19152 0.93317 0.97842 0.94439 1.20398 0.94302 1.06477 0.99652 1.20743 0.98181 0.96376 0.94278 1.21193 0.93136 1.07455 1.03270 1.19307 0.89254 0.90682 0.90810 1.83979 1.33252 1.61447 1.29740 1.21360 0.93494 1.37194 0.94664 0.89079 1.25279 0.95117 0.97301 0.98850 1.70049 1.02176 1.42440 1.35285 0.85657 0.78952 0.78701 0.80171 1.19123 1.20159 1.20166 1.20028 0.99030 1.04579 0.96775 1.22313 0.93551 0.98664 0.88092 0.89830 1.22682 0.96053 1.01235 0.97358 1.23159 0.99163 1.00676 0.97093 1.23107 0.88442 1.02138 0.95099 1.62933 1.39684 1.17513 1.09617 0.91569 0.92796 0.92176 0.83369 0.90864 0.94618 0.87728 0.87553 0.85677 0.92124 0.86959 0.91492 0.90248 0.91236 0.91894 0.90327 0.91095 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.02 37.16 0.34 -1.47 16 2 C 0.08 0.82 1.81 -67.71 -0.12 0.70 16 3 H 0.07 0.73 7.77 -51.93 -0.40 0.32 16 4 N -0.68 -8.37 5.62 -107.99 -0.61 -8.98 16 5 C 0.11 1.48 5.61 -4.98 -0.03 1.45 16 6 C -0.05 -0.82 5.39 -104.65 -0.56 -1.38 16 7 C -0.19 -3.28 9.70 -39.53 -0.38 -3.66 16 8 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 9 C -0.23 -5.06 9.17 -39.39 -0.36 -5.42 16 10 C 0.15 3.70 6.65 -39.11 -0.26 3.44 16 11 O -0.18 -5.16 9.76 0.02 0.00 -5.16 16 12 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 13 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 14 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 15 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 16 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 C -0.18 -3.84 9.64 -39.40 -0.38 -4.22 16 21 C 0.08 0.84 3.14 -66.64 -0.21 0.63 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 23 C -0.13 -1.33 6.29 -25.37 -0.16 -1.49 16 24 C -0.16 -1.31 7.06 -24.87 -0.18 -1.48 16 25 C 0.04 0.33 7.55 -1.89 -0.01 0.31 16 26 N -0.67 -6.01 6.85 -103.11 -0.71 -6.72 16 27 H 0.07 0.61 7.49 -51.93 -0.39 0.22 16 28 H 0.05 0.57 7.45 -51.93 -0.39 0.18 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.35 4.63 8.46 -39.29 -0.33 4.30 16 31 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 32 H 0.04 0.48 7.38 -51.93 -0.38 0.10 16 33 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.88 7.42 -51.93 -0.39 0.50 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.33 2.68 8.11 -39.29 -0.32 2.37 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -29.65 355.20 -9.69 -39.34 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.95 Total: 9.41 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -2.52 Total: -24.16 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.55 Total: -40.38 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.65 -9.69 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326038225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.629 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds