Wall clock time and date at job start Tue Mar 31 2020 08:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47498 * 2 1 4 4 N 1.46908 * 109.46821 * 240.00204 * 2 1 3 5 5 C 1.46898 * 110.99760 * 85.00030 * 4 2 1 6 6 C 1.50703 * 109.47052 * 180.02562 * 5 4 2 7 7 C 1.38326 * 119.96036 * 269.72169 * 6 5 4 8 8 C 1.38280 * 120.13593 * 180.27023 * 7 6 5 9 9 C 1.38125 * 120.06813 * 0.02562 * 8 7 6 10 10 C 1.38857 * 119.92941 * 359.97438 * 9 8 7 11 11 O 1.35759 * 120.06714 * 179.97438 * 10 9 8 12 12 C 1.34831 * 116.99718 * 354.48542 * 11 10 9 13 13 H 1.07998 * 120.00057 * 5.06548 * 12 11 10 14 14 C 1.38654 * 119.99581 * 185.05723 * 12 11 10 15 15 N 1.31561 * 120.00320 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46696 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46827 * 119.99911 * 16 14 12 19 19 H 1.48499 * 109.47147 * 240.00412 * 16 14 12 20 20 C 1.38074 * 119.96544 * 90.00117 * 6 5 4 21 21 C 1.53002 * 109.47271 * 120.00854 * 2 1 3 22 22 H 1.09001 * 109.90687 * 58.89136 * 21 2 1 23 23 C 1.53994 * 109.91496 * 179.97438 * 21 2 1 24 24 C 1.54602 * 105.13662 * 120.57598 * 23 21 2 25 25 C 1.54930 * 102.92330 * 21.95431 * 24 23 21 26 26 N 1.47904 * 109.91391 * 297.58402 * 21 2 1 27 27 H 1.09000 * 109.46642 * 299.99819 * 1 2 3 28 28 H 1.08995 * 109.47195 * 59.99226 * 1 2 3 29 29 H 1.08995 * 109.47498 * 179.97438 * 1 2 3 30 30 H 1.00901 * 111.00057 * 321.04933 * 4 2 1 31 31 H 1.08996 * 109.47398 * 60.00229 * 5 4 2 32 32 H 1.08994 * 109.47225 * 300.00019 * 5 4 2 33 33 H 1.07995 * 119.93590 * 0.26096 * 7 6 5 34 34 H 1.07998 * 119.96668 * 180.02562 * 8 7 6 35 35 H 1.08000 * 120.03457 * 179.97438 * 9 8 7 36 36 H 0.96999 * 119.99759 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.03806 * 359.69747 * 20 6 5 38 38 H 1.09000 * 110.30821 * 239.48653 * 23 21 2 39 39 H 1.08998 * 110.31225 * 1.55854 * 23 21 2 40 40 H 1.09003 * 110.72107 * 140.31628 * 24 23 21 41 41 H 1.08999 * 110.72153 * 263.41469 * 24 23 21 42 42 H 1.09000 * 110.66831 * 81.01884 * 25 24 23 43 43 H 1.09001 * 110.67204 * 204.14870 * 25 24 23 44 44 H 1.00900 * 111.00081 * 335.83572 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5872 -0.5217 -3.5562 7 6 3.9439 -0.5691 -3.8216 8 6 4.4106 -1.2463 -4.9332 9 6 3.5227 -1.8773 -5.7824 10 6 2.1602 -1.8316 -5.5186 11 8 1.2849 -2.4504 -6.3517 12 6 1.7910 -2.9938 -7.4771 13 1 2.8582 -2.9973 -7.6425 14 6 0.9411 -3.5481 -8.4221 15 7 -0.3590 -3.5435 -8.2208 16 14 1.6422 -4.3017 -9.9810 17 1 3.1223 -4.1816 -9.9665 18 1 1.2631 -5.7358 -10.0514 19 1 1.0986 -3.5872 -11.1640 20 6 1.6945 -1.1508 -4.4011 21 6 2.0401 -0.7214 1.2491 22 1 1.6646 -1.7446 1.2661 23 6 3.5799 -0.7279 1.2591 24 6 3.9783 0.0035 2.5616 25 6 2.7105 -0.1389 3.4406 26 7 1.6009 0.0010 2.4627 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.4495 -1.4979 -1.4102 31 1 2.7588 1.0462 -2.1183 32 1 1.0870 0.6164 -2.5525 33 1 4.6401 -0.0760 -3.1594 34 1 5.4705 -1.2819 -5.1375 35 1 3.8878 -2.4058 -6.6507 36 1 -0.9534 -3.9317 -8.8818 37 1 0.6354 -1.1137 -4.1931 38 1 3.9539 -1.7517 1.2707 39 1 3.9662 -0.1946 0.3906 40 1 4.8313 -0.4849 3.0328 41 1 4.1976 1.0526 2.3631 42 1 2.6812 -1.1185 3.9177 43 1 2.6683 0.6548 4.1865 44 1 1.4186 0.9723 2.2593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326038225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:26 Heat of formation + Delta-G solvation = -26.697053 kcal Electronic energy + Delta-G solvation = -22575.723260 eV Core-core repulsion = 19299.128290 eV Total energy + Delta-G solvation = -3276.594970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83118 -40.11198 -38.54279 -36.84132 -34.30879 -33.18738 -31.17621 -30.75855 -29.95396 -28.67213 -27.40407 -25.89284 -23.35999 -23.04229 -22.33377 -22.14341 -21.00746 -19.49389 -18.80044 -17.14689 -16.73300 -16.62751 -16.41961 -16.13671 -16.06255 -15.56975 -15.47474 -15.19415 -14.61157 -14.43418 -14.24042 -14.09222 -13.85894 -13.57966 -13.51517 -13.09752 -12.92018 -12.77298 -12.54891 -12.41819 -12.25229 -12.19552 -12.06846 -11.96517 -11.87858 -11.64846 -11.31350 -11.16848 -10.81273 -9.73263 -9.54230 -9.29333 -8.97128 -8.47315 -6.15596 0.52824 0.76826 1.34498 1.42932 1.52819 2.17275 2.76947 3.02814 3.23518 3.46100 3.66554 3.81449 3.91343 3.97692 4.06537 4.12605 4.24585 4.33058 4.34833 4.38480 4.48678 4.63146 4.66929 4.68189 4.72062 4.75544 4.85563 4.91294 5.01421 5.07782 5.13871 5.14194 5.19119 5.24547 5.30293 5.32680 5.44463 5.66534 5.74511 5.80933 5.87995 6.02899 6.07650 6.25664 6.36279 6.51531 6.97863 7.79381 8.76346 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030378 B = 0.002835 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.497327 B = 9874.941874 C =10377.275160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.088 3.912 3 H 0.085 0.915 4 N -0.677 5.677 5 C 0.114 3.886 6 C -0.036 4.036 7 C -0.169 4.169 8 C -0.074 4.074 9 C -0.245 4.245 10 C 0.112 3.888 11 O -0.235 6.235 12 C -0.412 4.412 13 H 0.101 0.899 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.019 2.981 17 H -0.252 1.252 18 H -0.268 1.268 19 H -0.268 1.268 20 C -0.195 4.195 21 C 0.089 3.911 22 H 0.065 0.935 23 C -0.133 4.133 24 C -0.155 4.155 25 C 0.042 3.958 26 N -0.675 5.675 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.340 0.660 31 H 0.097 0.903 32 H 0.037 0.963 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.116 0.884 36 H 0.272 0.728 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.619 9.313 19.255 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.022 4.022 3 H 0.103 0.897 4 N -0.307 5.307 5 C -0.015 4.015 6 C -0.037 4.037 7 C -0.188 4.188 8 C -0.092 4.092 9 C -0.264 4.264 10 C 0.063 3.937 11 O -0.142 6.142 12 C -0.488 4.488 13 H 0.118 0.882 14 C -0.221 4.221 15 N -0.561 5.561 16 Si 0.838 3.162 17 H -0.175 1.175 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.215 4.215 21 C -0.021 4.021 22 H 0.083 0.917 23 C -0.173 4.173 24 C -0.194 4.194 25 C -0.087 4.087 26 N -0.304 5.304 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.158 0.842 31 H 0.115 0.885 32 H 0.055 0.945 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.396 8.791 19.635 23.093 hybrid contribution -0.447 -0.080 -1.701 1.760 sum 7.949 8.711 17.934 21.463 Atomic orbital electron populations 1.22411 0.96635 1.02046 1.02346 1.21780 0.93047 0.97707 0.89712 0.89688 1.60544 1.57617 1.09426 1.03127 1.20793 0.99621 0.94201 0.86853 1.19567 0.93196 0.96210 0.94693 1.20930 0.94668 1.04270 0.98947 1.21153 0.99514 0.94938 0.93546 1.21300 0.92772 1.08342 1.04018 1.19877 0.90208 0.92103 0.91559 1.83940 1.35186 1.64029 1.31000 1.21844 0.94214 1.37539 0.95188 0.88208 1.26583 0.95401 0.97645 1.02486 1.70193 1.03931 1.44855 1.37101 0.84532 0.78857 0.77754 0.75070 1.17490 1.19344 1.19323 1.20236 0.99579 1.04982 0.96692 1.22168 0.93670 0.97859 0.88421 0.91659 1.22642 0.95769 1.00769 0.98091 1.23118 0.99403 1.00876 0.96030 1.23148 0.87872 1.02603 0.95116 1.62890 1.40269 1.17999 1.09222 0.90491 0.93324 0.93232 0.84228 0.88465 0.94514 0.83820 0.83877 0.86601 0.91890 0.87692 0.92550 0.91019 0.90618 0.91133 0.90818 0.89349 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.29 9.02 71.98 0.65 -2.64 16 2 C 0.09 1.60 1.81 44.91 0.08 1.68 16 3 H 0.08 1.40 7.77 -2.39 -0.02 1.38 16 4 N -0.68 -15.48 5.62 -495.57 -2.79 -18.26 16 5 C 0.11 2.81 5.61 85.56 0.48 3.29 16 6 C -0.04 -1.19 5.39 -19.88 -0.11 -1.30 16 7 C -0.17 -5.25 9.70 22.30 0.22 -5.03 16 8 C -0.07 -2.53 10.04 22.25 0.22 -2.31 16 9 C -0.24 -10.80 9.17 22.39 0.21 -10.59 16 10 C 0.11 5.66 6.65 22.58 0.15 5.81 16 11 O -0.23 -14.31 9.76 -22.85 -0.22 -14.54 16 12 C -0.41 -24.29 9.49 67.92 0.64 -23.65 16 13 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 14 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 15 N -0.92 -57.22 13.67 21.61 0.30 -56.93 16 16 Si 1.02 43.34 29.55 68.60 2.03 45.37 16 17 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 20 C -0.19 -8.31 9.64 22.39 0.22 -8.09 16 21 C 0.09 1.62 3.14 45.06 0.14 1.76 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 23 C -0.13 -2.35 6.29 31.48 0.20 -2.16 16 24 C -0.16 -2.08 7.06 31.80 0.22 -1.86 16 25 C 0.04 0.55 7.55 86.64 0.65 1.21 16 26 N -0.68 -10.60 6.85 -480.14 -3.29 -13.89 16 27 H 0.08 1.28 7.49 -2.39 -0.02 1.26 16 28 H 0.05 0.96 7.45 -2.39 -0.02 0.94 16 29 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 30 H 0.34 8.82 8.46 -89.69 -0.76 8.07 16 31 H 0.10 2.01 8.00 -2.39 -0.02 1.99 16 32 H 0.04 0.92 7.38 -2.39 -0.02 0.91 16 33 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 34 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 36 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.38 7.42 -2.39 -0.02 1.36 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.34 4.52 8.11 -89.69 -0.73 3.79 16 Total: -1.00 -68.76 355.20 -0.01 -68.78 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.48 Total: 34.25 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 4.44 Total: -44.77 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -5.78 Total: -89.09 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.22 Total: -14.54 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.76 -0.01 -68.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326038225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.080 kcal (2) G-P(sol) polarization free energy of solvation -68.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds