Wall clock time and date at job start Tue Mar 31 2020 06:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47385 * 2 1 4 4 O 1.42901 * 109.47253 * 120.00380 * 2 1 3 5 5 C 1.42892 * 114.00336 * 150.00052 * 4 2 1 6 6 H 1.09006 * 109.50423 * 329.91898 * 5 4 2 7 7 C 1.53126 * 109.50672 * 89.99507 * 5 4 2 8 8 C 1.53114 * 109.16239 * 177.63553 * 7 5 4 9 9 C 1.53037 * 109.31211 * 302.32855 * 8 7 5 10 10 N 1.46929 * 109.47910 * 59.15772 * 9 8 7 11 11 C 1.38831 * 110.98520 * 174.18303 * 10 9 8 12 12 C 1.39800 * 119.57949 * 303.95517 * 11 10 9 13 13 C 1.38602 * 119.48533 * 179.77364 * 12 11 10 14 14 C 1.38393 * 118.68037 * 0.49094 * 13 12 11 15 15 C 1.40555 * 119.14676 * 359.75558 * 14 13 12 16 16 C 1.41318 * 119.78010 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99921 * 359.97438 * 16 15 14 18 18 C 1.40024 * 120.00132 * 179.97438 * 16 15 14 19 19 N 1.30746 * 119.99610 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00245 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47507 * 60.00107 * 20 18 16 22 22 H 1.48503 * 109.47152 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47073 * 299.99990 * 20 18 16 24 24 N 1.31953 * 119.58319 * 124.23092 * 11 10 9 25 25 C 1.46850 * 111.22205 * 298.28247 * 10 9 8 26 26 H 1.08994 * 109.46827 * 300.00221 * 1 2 3 27 27 H 1.08994 * 109.47110 * 60.00043 * 1 2 3 28 28 H 1.09002 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47170 * 240.00179 * 2 1 3 30 30 H 1.09002 * 109.47125 * 300.00329 * 3 2 1 31 31 H 1.09004 * 109.46820 * 59.99964 * 3 2 1 32 32 H 1.08991 * 109.47448 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.51941 * 57.72845 * 7 5 4 34 34 H 1.09002 * 109.52329 * 297.54713 * 7 5 4 35 35 H 1.09002 * 109.50377 * 62.28979 * 8 7 5 36 36 H 1.09003 * 109.50316 * 182.36975 * 8 7 5 37 37 H 1.08994 * 109.46612 * 179.21753 * 9 8 7 38 38 H 1.09007 * 109.46083 * 299.18512 * 9 8 7 39 39 H 1.07999 * 120.25589 * 0.02562 * 12 11 10 40 40 H 1.07998 * 120.65727 * 180.25068 * 13 12 11 41 41 H 1.07997 * 120.42727 * 179.77267 * 14 13 12 42 42 H 0.97004 * 119.99892 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.46198 * 301.72747 * 25 10 9 44 44 H 1.08995 * 109.45893 * 181.75622 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9886 6 1 3.3686 -1.6409 -0.0495 7 6 4.3971 -0.3546 1.3415 8 6 5.7400 -1.0774 1.2048 9 6 5.7477 -2.3072 2.1156 10 7 4.6471 -3.2040 1.7372 11 6 4.7027 -4.3903 2.4564 12 6 5.8647 -5.1665 2.4183 13 6 5.9198 -6.3481 3.1407 14 6 4.8104 -6.7303 3.8745 15 6 3.6696 -5.9093 3.8684 16 6 2.5295 -6.2864 4.6134 17 1 2.5366 -7.2029 5.1846 18 6 1.3906 -5.4718 4.6110 19 7 1.3819 -4.3624 3.9190 20 14 -0.1161 -5.9698 5.5963 21 1 0.2449 -6.0773 7.0327 22 1 -1.1785 -4.9460 5.4277 23 1 -0.6131 -7.2826 5.1113 24 7 3.6561 -4.7735 3.1627 25 6 3.3444 -2.5473 1.9055 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 4.2727 -0.0078 2.3674 34 1 4.3713 0.4977 0.6624 35 1 5.8814 -1.3899 0.1702 36 1 6.5467 -0.4044 1.4953 37 1 6.6974 -2.8315 2.0099 38 1 5.6200 -1.9928 3.1515 39 1 6.7144 -4.8459 1.8337 40 1 6.8094 -6.9603 3.1281 41 1 4.8213 -7.6473 4.4448 42 1 0.5928 -3.7982 3.9171 43 1 3.2280 -2.2318 2.9423 44 1 2.5492 -3.2465 1.6473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326453095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:48 Heat of formation + Delta-G solvation = -10.836483 kcal Electronic energy + Delta-G solvation = -24016.918673 eV Core-core repulsion = 20741.011470 eV Total energy + Delta-G solvation = -3275.907204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.31 seconds Orbital eigenvalues (eV) -39.54155 -38.23352 -36.64150 -33.73964 -32.83183 -32.26120 -30.44189 -29.17683 -28.78084 -27.19032 -25.60442 -23.89743 -22.63893 -21.23126 -21.04848 -20.53646 -19.27163 -17.54915 -16.65747 -15.85543 -15.34410 -14.82880 -14.73982 -14.43304 -14.39834 -13.91374 -13.70882 -13.41029 -13.14552 -12.87936 -12.53011 -12.44168 -12.19572 -12.13694 -11.88147 -11.72932 -11.53689 -11.15233 -11.08356 -11.01514 -10.73978 -10.62032 -10.56699 -10.40294 -10.25730 -10.02225 -9.96128 -9.39684 -9.13345 -8.67250 -7.99915 -7.56682 -6.93538 -6.37278 -4.49197 2.77188 3.04561 3.10989 3.12690 3.24470 3.76469 3.97455 4.60647 4.84456 4.94756 5.05347 5.10745 5.23030 5.24853 5.27950 5.54334 5.58323 5.66506 5.74098 5.80495 5.84046 5.93101 5.97325 6.03530 6.09016 6.12284 6.15364 6.21978 6.27931 6.36982 6.43525 6.57055 6.65681 6.73625 6.82647 6.93858 7.15395 7.20075 7.49373 7.63190 7.74021 7.81381 7.87572 8.21126 8.39206 8.73216 9.01326 10.11462 10.34437 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.006085 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.237196 B = 4600.479142 C = 6532.490530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 C -0.178 4.178 4 O -0.369 6.369 5 C 0.091 3.909 6 H 0.060 0.940 7 C -0.145 4.145 8 C -0.113 4.113 9 C 0.062 3.938 10 N -0.478 5.478 11 C 0.323 3.677 12 C -0.322 4.322 13 C -0.045 4.045 14 C -0.296 4.296 15 C 0.275 3.725 16 C -0.432 4.432 17 H 0.082 0.918 18 C 0.071 3.929 19 N -0.711 5.711 20 Si 0.905 3.095 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.266 1.266 24 N -0.506 5.506 25 C 0.086 3.914 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.273 0.727 43 H 0.055 0.945 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 9.729 -6.440 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.023 3.977 3 C -0.235 4.235 4 O -0.287 6.287 5 C 0.032 3.968 6 H 0.078 0.922 7 C -0.182 4.182 8 C -0.151 4.151 9 C -0.065 4.065 10 N -0.198 5.198 11 C 0.085 3.915 12 C -0.347 4.347 13 C -0.069 4.069 14 C -0.319 4.319 15 C 0.149 3.851 16 C -0.463 4.463 17 H 0.100 0.900 18 C -0.155 4.155 19 N -0.332 5.332 20 Si 0.729 3.271 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.190 1.190 24 N -0.224 5.224 25 C -0.042 4.042 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.417 10.351 -6.805 12.394 hybrid contribution 0.200 -0.539 0.897 1.065 sum 0.618 9.811 -5.908 11.470 Atomic orbital electron populations 1.21854 0.94022 1.02852 1.01939 1.22098 0.94802 0.92273 0.88516 1.22474 1.01751 0.97222 1.02045 1.87961 1.36652 1.69434 1.34699 1.22284 0.82512 0.92394 0.99577 0.92210 1.22280 0.95197 0.98429 1.02319 1.21559 0.96699 0.96210 1.00655 1.22132 0.94567 0.92749 0.97038 1.59016 1.03929 1.04014 1.52870 1.19751 0.91073 0.90612 0.90070 1.20659 0.99493 1.01007 1.13569 1.20689 0.96521 0.94820 0.94900 1.21631 0.96558 1.03541 1.10209 1.18316 0.91327 0.86574 0.88926 1.19546 0.96061 1.06243 1.24456 0.89981 1.26030 0.99934 0.94452 0.95072 1.70079 1.27706 1.07871 1.27503 0.86435 0.80603 0.79307 0.80731 1.19075 1.20253 1.19033 1.68667 1.25153 1.17904 1.10698 1.21684 0.91015 0.93285 0.98186 0.91942 0.91799 0.91794 0.92507 0.92253 0.91979 0.92099 0.91486 0.91914 0.91277 0.91428 0.90264 0.94515 0.88738 0.88648 0.88540 0.91520 0.92651 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.56 37.16 0.36 -1.40 16 2 C 0.08 1.06 3.34 -26.73 -0.09 0.97 16 3 C -0.18 -1.94 9.32 37.16 0.35 -1.59 16 4 O -0.37 -6.27 9.67 -35.23 -0.34 -6.61 16 5 C 0.09 1.53 2.77 -26.65 -0.07 1.46 16 6 H 0.06 0.98 7.37 -51.93 -0.38 0.60 16 7 C -0.14 -2.09 5.37 -26.61 -0.14 -2.23 16 8 C -0.11 -1.57 6.09 -26.65 -0.16 -1.73 16 9 C 0.06 1.09 5.25 -3.79 -0.02 1.07 16 10 N -0.48 -10.06 4.67 -173.13 -0.81 -10.87 16 11 C 0.32 7.93 6.41 -155.32 -1.00 6.94 16 12 C -0.32 -7.44 9.20 -38.86 -0.36 -7.80 16 13 C -0.04 -1.03 10.15 -39.39 -0.40 -1.43 16 14 C -0.30 -7.42 9.83 -38.65 -0.38 -7.80 16 15 C 0.27 7.57 6.55 -85.00 -0.56 7.01 16 16 C -0.43 -11.58 9.14 -37.74 -0.34 -11.92 16 17 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 18 C 0.07 1.80 5.50 -17.34 -0.10 1.70 16 19 N -0.71 -18.61 11.46 55.55 0.64 -17.97 16 20 Si 0.90 18.77 29.56 -169.99 -5.02 13.75 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 N -0.51 -13.78 6.16 -10.32 -0.06 -13.84 16 25 C 0.09 1.81 4.30 -3.83 -0.02 1.80 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.71 7.37 -51.93 -0.38 0.33 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.66 5.52 -51.93 -0.29 0.37 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.78 5.59 -51.93 -0.29 0.49 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.33 6.67 -51.93 -0.35 0.98 16 38 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 39 H 0.09 1.96 7.15 -52.49 -0.38 1.58 16 40 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.27 6.66 8.29 -40.82 -0.34 6.32 16 43 H 0.06 1.32 8.11 -51.93 -0.42 0.90 16 44 H 0.10 2.44 7.70 -51.93 -0.40 2.04 16 LS Contribution 346.62 15.07 5.22 5.22 Total: -1.00 -28.72 346.62 -10.39 -39.11 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.08 Total: 6.17 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.93 Total: -14.96 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.24 Total: -42.69 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.34 Total: -6.61 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.72 -10.39 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326453095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.275 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.31 seconds