Wall clock time and date at job start Tue Mar 31 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47385 * 2 1 4 4 O 1.42901 * 109.47253 * 120.00380 * 2 1 3 5 5 C 1.42892 * 114.00336 * 150.00052 * 4 2 1 6 6 H 1.09006 * 109.50423 * 329.91898 * 5 4 2 7 7 C 1.53126 * 109.50672 * 89.99507 * 5 4 2 8 8 C 1.53114 * 109.16239 * 177.63553 * 7 5 4 9 9 C 1.53037 * 109.31211 * 302.32855 * 8 7 5 10 10 N 1.46929 * 109.47910 * 59.15772 * 9 8 7 11 11 C 1.38831 * 110.98520 * 174.18303 * 10 9 8 12 12 C 1.39800 * 119.57949 * 303.95517 * 11 10 9 13 13 C 1.38602 * 119.48533 * 179.77364 * 12 11 10 14 14 C 1.38393 * 118.68037 * 0.49094 * 13 12 11 15 15 C 1.40555 * 119.14676 * 359.75558 * 14 13 12 16 16 C 1.41318 * 119.78010 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99921 * 359.97438 * 16 15 14 18 18 C 1.40024 * 120.00132 * 179.97438 * 16 15 14 19 19 N 1.30746 * 119.99610 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00245 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47507 * 60.00107 * 20 18 16 22 22 H 1.48503 * 109.47152 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47073 * 299.99990 * 20 18 16 24 24 N 1.31953 * 119.58319 * 124.23092 * 11 10 9 25 25 C 1.46850 * 111.22205 * 298.28247 * 10 9 8 26 26 H 1.08994 * 109.46827 * 300.00221 * 1 2 3 27 27 H 1.08994 * 109.47110 * 60.00043 * 1 2 3 28 28 H 1.09002 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47170 * 240.00179 * 2 1 3 30 30 H 1.09002 * 109.47125 * 300.00329 * 3 2 1 31 31 H 1.09004 * 109.46820 * 59.99964 * 3 2 1 32 32 H 1.08991 * 109.47448 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.51941 * 57.72845 * 7 5 4 34 34 H 1.09002 * 109.52329 * 297.54713 * 7 5 4 35 35 H 1.09002 * 109.50377 * 62.28979 * 8 7 5 36 36 H 1.09003 * 109.50316 * 182.36975 * 8 7 5 37 37 H 1.08994 * 109.46612 * 179.21753 * 9 8 7 38 38 H 1.09007 * 109.46083 * 299.18512 * 9 8 7 39 39 H 1.07999 * 120.25589 * 0.02562 * 12 11 10 40 40 H 1.07998 * 120.65727 * 180.25068 * 13 12 11 41 41 H 1.07997 * 120.42727 * 179.77267 * 14 13 12 42 42 H 0.97004 * 119.99892 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.46198 * 301.72747 * 25 10 9 44 44 H 1.08995 * 109.45893 * 181.75622 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9886 6 1 3.3686 -1.6409 -0.0495 7 6 4.3971 -0.3546 1.3415 8 6 5.7400 -1.0774 1.2048 9 6 5.7477 -2.3072 2.1156 10 7 4.6471 -3.2040 1.7372 11 6 4.7027 -4.3903 2.4564 12 6 5.8647 -5.1665 2.4183 13 6 5.9198 -6.3481 3.1407 14 6 4.8104 -6.7303 3.8745 15 6 3.6696 -5.9093 3.8684 16 6 2.5295 -6.2864 4.6134 17 1 2.5366 -7.2029 5.1846 18 6 1.3906 -5.4718 4.6110 19 7 1.3819 -4.3624 3.9190 20 14 -0.1161 -5.9698 5.5963 21 1 0.2449 -6.0773 7.0327 22 1 -1.1785 -4.9460 5.4277 23 1 -0.6131 -7.2826 5.1113 24 7 3.6561 -4.7735 3.1627 25 6 3.3444 -2.5473 1.9055 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 4.2727 -0.0078 2.3674 34 1 4.3713 0.4977 0.6624 35 1 5.8814 -1.3899 0.1702 36 1 6.5467 -0.4044 1.4953 37 1 6.6974 -2.8315 2.0099 38 1 5.6200 -1.9928 3.1515 39 1 6.7144 -4.8459 1.8337 40 1 6.8094 -6.9603 3.1281 41 1 4.8213 -7.6473 4.4448 42 1 0.5928 -3.7982 3.9171 43 1 3.2280 -2.2318 2.9423 44 1 2.5492 -3.2465 1.6473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326453095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:42 Heat of formation + Delta-G solvation = -26.728358 kcal Electronic energy + Delta-G solvation = -24017.607797 eV Core-core repulsion = 20741.011470 eV Total energy + Delta-G solvation = -3276.596327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12545 -39.75402 -38.16022 -35.54350 -34.28864 -33.49407 -32.31176 -30.75296 -30.46919 -28.14911 -27.45140 -25.46144 -24.16355 -22.78765 -22.41328 -22.13031 -20.72679 -19.39975 -18.18093 -17.33082 -16.79955 -16.49242 -16.30702 -16.05701 -15.73717 -15.56457 -15.20793 -14.82040 -14.44939 -14.38359 -13.94513 -13.86497 -13.58633 -13.38924 -13.09778 -13.06619 -12.84720 -12.79382 -12.68851 -12.61444 -12.37481 -12.19170 -11.88999 -11.85266 -11.66589 -11.50524 -11.32781 -11.16629 -10.49793 -10.38375 -9.92559 -9.49443 -8.79574 -8.27513 -6.50422 0.89203 1.19261 1.38038 1.50131 1.52893 2.21422 2.45298 2.82668 3.22776 3.80067 3.89406 3.93462 3.97941 4.02966 4.13361 4.19420 4.25585 4.33931 4.43616 4.54010 4.55265 4.73189 4.76465 4.82275 4.85734 4.87222 4.92276 4.93137 4.94637 4.98368 5.00689 5.12200 5.16773 5.25683 5.29246 5.36794 5.37709 5.42914 5.66315 5.88209 5.95868 6.01049 6.28942 6.47266 6.48438 6.79166 7.05128 8.18413 8.44394 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.006085 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.237196 B = 4600.479142 C = 6532.490530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 C -0.170 4.170 4 O -0.398 6.398 5 C 0.100 3.900 6 H 0.068 0.932 7 C -0.137 4.137 8 C -0.103 4.103 9 C 0.059 3.941 10 N -0.475 5.475 11 C 0.301 3.699 12 C -0.320 4.320 13 C -0.041 4.041 14 C -0.319 4.319 15 C 0.239 3.761 16 C -0.468 4.468 17 H 0.087 0.913 18 C 0.026 3.974 19 N -0.742 5.742 20 Si 0.982 3.018 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.259 1.259 24 N -0.536 5.536 25 C 0.103 3.897 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.017 0.983 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.275 0.725 43 H 0.015 0.985 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 11.124 -7.758 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 C -0.227 4.227 4 O -0.318 6.318 5 C 0.042 3.958 6 H 0.086 0.914 7 C -0.174 4.174 8 C -0.141 4.141 9 C -0.067 4.067 10 N -0.195 5.195 11 C 0.063 3.937 12 C -0.345 4.345 13 C -0.065 4.065 14 C -0.342 4.342 15 C 0.113 3.887 16 C -0.499 4.499 17 H 0.105 0.895 18 C -0.197 4.197 19 N -0.364 5.364 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.183 1.183 24 N -0.254 5.254 25 C -0.025 4.025 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.035 0.965 39 H 0.142 0.858 40 H 0.153 0.847 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.033 0.967 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.498 11.755 -8.139 14.376 hybrid contribution -0.051 -0.970 1.233 1.570 sum 1.448 10.785 -6.906 12.888 Atomic orbital electron populations 1.21884 0.93386 1.02093 1.03175 1.22417 0.95459 0.93488 0.87352 1.22403 1.01929 0.95402 1.03016 1.87935 1.36834 1.69944 1.37037 1.22119 0.83877 0.91393 0.98436 0.91440 1.22232 0.94294 0.98665 1.02259 1.21576 0.97323 0.94739 1.00439 1.22327 0.93505 0.93851 0.97059 1.59150 1.04772 1.03792 1.51756 1.20341 0.91217 0.92177 0.89964 1.21026 0.99651 1.00659 1.13140 1.21117 0.97099 0.94944 0.93387 1.21825 0.96886 1.03998 1.11508 1.18826 0.92712 0.87458 0.89700 1.19899 0.97183 1.07194 1.25649 0.89477 1.26929 1.02752 0.94101 0.95897 1.70228 1.28510 1.08871 1.28764 0.85264 0.76337 0.79056 0.79054 1.18365 1.19592 1.18299 1.68655 1.26770 1.18308 1.11672 1.21364 0.90103 0.94092 0.96899 0.92505 0.88717 0.93573 0.91812 0.89685 0.92586 0.91697 0.92854 0.88781 0.89864 0.87957 0.89023 0.96494 0.85819 0.84662 0.87527 0.91486 0.96658 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.56 71.98 0.69 -2.69 16 2 C 0.07 1.75 3.34 30.60 0.10 1.85 16 3 C -0.17 -3.26 9.32 71.98 0.67 -2.59 16 4 O -0.40 -13.73 9.67 -148.98 -1.44 -15.17 16 5 C 0.10 3.39 2.77 30.65 0.08 3.47 16 6 H 0.07 2.16 7.37 -2.38 -0.02 2.15 16 7 C -0.14 -3.70 5.37 30.67 0.16 -3.53 16 8 C -0.10 -2.54 6.09 30.64 0.19 -2.36 16 9 C 0.06 2.00 5.25 86.31 0.45 2.45 16 10 N -0.47 -20.30 4.67 -701.67 -3.28 -23.58 16 11 C 0.30 15.16 6.41 133.42 0.85 16.02 16 12 C -0.32 -14.51 9.20 22.73 0.21 -14.30 16 13 C -0.04 -1.85 10.15 22.39 0.23 -1.62 16 14 C -0.32 -16.29 9.83 22.87 0.22 -16.07 16 15 C 0.24 13.78 6.55 40.18 0.26 14.05 16 16 C -0.47 -26.27 9.14 23.46 0.21 -26.06 16 17 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 18 C 0.03 1.35 5.50 85.29 0.47 1.82 16 19 N -0.74 -41.26 11.46 21.84 0.25 -41.01 16 20 Si 0.98 39.78 29.56 68.60 2.03 41.81 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 N -0.54 -30.67 6.16 -186.58 -1.15 -31.82 16 25 C 0.10 4.62 4.30 86.33 0.37 4.99 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.49 7.37 -2.39 -0.02 1.48 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.18 5.52 -2.39 -0.01 1.17 16 33 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.09 1.99 5.59 -2.39 -0.01 1.98 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 2.86 6.67 -2.39 -0.02 2.85 16 38 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.12 4.80 7.15 -2.91 -0.02 4.78 16 40 H 0.14 4.90 8.06 -2.91 -0.02 4.87 16 41 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 42 H 0.27 14.22 8.29 -92.71 -0.77 13.45 16 43 H 0.01 0.78 8.11 -2.39 -0.02 0.76 16 44 H 0.06 2.94 7.70 -2.39 -0.02 2.92 16 Total: -1.00 -67.36 346.62 2.57 -64.80 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.97 Total: 29.56 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 5.18 Total: -24.57 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -4.18 Total: -96.42 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -1.44 Total: -15.17 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -67.36 2.57 -64.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326453095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.067 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds