Wall clock time and date at job start Tue Mar 31 2020 08:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46959 * 2 1 4 4 N 1.46891 * 109.47543 * 239.99501 * 2 1 3 5 5 C 1.46900 * 111.00256 * 84.99902 * 4 2 1 6 6 C 1.50700 * 109.47426 * 180.02562 * 5 4 2 7 7 C 1.38323 * 119.96407 * 90.00195 * 6 5 4 8 8 C 1.38278 * 120.13907 * 179.97438 * 7 6 5 9 9 C 1.38122 * 120.06767 * 359.97438 * 8 7 6 10 10 C 1.38859 * 119.93112 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.06643 * 180.02562 * 10 9 8 12 12 C 1.34824 * 117.00328 * 354.45880 * 11 10 9 13 13 H 1.07997 * 120.00013 * 5.05584 * 12 11 10 14 14 C 1.38655 * 120.00077 * 185.06051 * 12 11 10 15 15 N 1.31564 * 120.00084 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00132 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47092 * 89.99938 * 16 14 12 18 18 H 1.48491 * 109.47159 * 210.00336 * 16 14 12 19 19 H 1.48503 * 109.46916 * 330.00356 * 16 14 12 20 20 C 1.38073 * 119.96659 * 269.72685 * 6 5 4 21 21 C 1.53003 * 109.46930 * 119.99391 * 2 1 3 22 22 H 1.08996 * 110.36417 * 54.10309 * 21 2 1 23 23 C 1.54383 * 110.41379 * 291.62561 * 21 2 1 24 24 C 1.54249 * 105.06309 * 217.36792 * 23 21 2 25 25 C 1.54380 * 105.06034 * 0.02562 * 24 23 21 26 26 N 1.48557 * 110.41001 * 176.45393 * 21 2 1 27 27 H 1.08999 * 109.46985 * 300.00569 * 1 2 3 28 28 H 1.08999 * 109.46705 * 60.00387 * 1 2 3 29 29 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 30 30 H 1.00901 * 110.99782 * 321.04716 * 4 2 1 31 31 H 1.09006 * 109.46893 * 300.00588 * 5 4 2 32 32 H 1.09000 * 109.47307 * 59.99881 * 5 4 2 33 33 H 1.08001 * 119.93146 * 0.02562 * 7 6 5 34 34 H 1.08006 * 119.96608 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.03222 * 180.02562 * 9 8 7 36 36 H 0.96998 * 119.99794 * 179.97438 * 15 14 12 37 37 H 1.07997 * 120.03296 * 0.02562 * 20 6 5 38 38 H 1.09001 * 110.32107 * 336.26944 * 23 21 2 39 39 H 1.09002 * 110.32090 * 98.36895 * 23 21 2 40 40 H 1.09003 * 110.32493 * 118.89806 * 24 23 21 41 41 H 1.08999 * 110.32813 * 241.00357 * 24 23 21 42 42 H 1.09006 * 110.41200 * 265.07223 * 25 24 23 43 43 H 1.09004 * 110.41544 * 142.63625 * 25 24 23 44 44 H 1.00901 * 111.00602 * 277.81666 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0826 0.2224 -2.3468 6 6 2.5875 -0.5221 -3.5559 7 6 1.6934 -1.1525 -4.4023 8 6 2.1527 -1.8361 -5.5130 9 6 3.5066 -1.8911 -5.7808 10 6 4.4068 -1.2593 -4.9330 11 8 5.7380 -1.3111 -5.1939 12 6 6.1300 -2.0864 -6.2249 13 1 5.3921 -2.5658 -6.8511 14 6 7.4804 -2.2683 -6.4813 15 7 7.8630 -3.0252 -7.4870 16 14 8.7567 -1.4386 -5.3986 17 1 9.1047 -2.3356 -4.2674 18 1 9.9752 -1.1549 -6.1984 19 1 8.2046 -0.1658 -4.8692 20 6 3.9418 -0.5695 -3.8207 21 6 2.0400 -0.7211 1.2494 22 1 1.6015 -1.7166 1.3182 23 6 1.7167 0.1011 2.5154 24 6 2.9383 -0.0868 3.4382 25 6 3.8973 -1.0062 2.6519 26 7 3.5228 -0.8084 1.2282 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.4496 -1.4980 -1.4098 31 1 1.0871 0.6161 -2.5525 32 1 2.7589 1.0461 -2.1183 33 1 0.6342 -1.1099 -4.1957 34 1 1.4521 -2.3277 -6.1718 35 1 3.8647 -2.4249 -6.6487 36 1 8.8077 -3.1522 -7.6666 37 1 4.6391 -0.0737 -3.1617 38 1 1.5923 1.1538 2.2615 39 1 0.8156 -0.2810 2.9951 40 1 3.4137 0.8737 3.6374 41 1 2.6377 -0.5606 4.3726 42 1 3.7499 -2.0466 2.9421 43 1 4.9323 -0.7074 2.8183 44 1 3.8315 -1.5843 0.6618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327840413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:41 Heat of formation + Delta-G solvation = -4.070298 kcal Electronic energy + Delta-G solvation = -22684.286936 eV Core-core repulsion = 19408.673136 eV Total energy + Delta-G solvation = -3275.613800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.34841 -38.95159 -37.10800 -35.73913 -32.38063 -32.05760 -30.41154 -29.67219 -28.86660 -27.69049 -25.40144 -24.60493 -22.47058 -21.71151 -21.07499 -20.54847 -19.95899 -17.69379 -17.16410 -16.80676 -15.80127 -15.39520 -15.06945 -14.86375 -14.62039 -14.15511 -13.90193 -13.71325 -13.45582 -13.22654 -13.03233 -12.72480 -12.54662 -12.33929 -12.16025 -12.15828 -11.88608 -11.58044 -11.48549 -11.32436 -11.22678 -11.04465 -10.79464 -10.72052 -10.70386 -10.48947 -10.09365 -9.34362 -8.83680 -8.58941 -8.30399 -8.07092 -7.32930 -6.37525 -4.04129 2.08533 2.30758 3.26096 3.30111 3.45465 4.03539 4.16869 4.28375 4.55510 4.60133 4.73887 4.82733 4.85711 4.92285 5.04779 5.14345 5.20959 5.22521 5.34962 5.39834 5.46115 5.52030 5.62510 5.63468 5.64175 5.73871 5.84022 5.86748 5.87070 5.93275 5.95951 6.01505 6.17235 6.33077 6.59136 6.75664 6.84570 7.10142 7.17466 7.26403 7.35434 7.38661 7.51174 7.65076 7.84839 8.08434 8.98244 9.61756 10.70273 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.003664 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.414233 B = 7640.860263 C = 9057.132078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.098 3.902 3 H 0.083 0.917 4 N -0.672 5.672 5 C 0.110 3.890 6 C -0.049 4.049 7 C -0.200 4.200 8 C -0.078 4.078 9 C -0.220 4.220 10 C 0.157 3.843 11 O -0.218 6.218 12 C -0.388 4.388 13 H 0.106 0.894 14 C 0.063 3.937 15 N -0.882 5.882 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.259 1.259 20 C -0.164 4.164 21 C 0.080 3.920 22 H 0.044 0.956 23 C -0.120 4.120 24 C -0.124 4.124 25 C 0.032 3.968 26 N -0.648 5.648 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.338 0.662 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.279 0.721 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.078 0.922 44 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.908 5.291 18.085 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.013 4.013 3 H 0.101 0.899 4 N -0.302 5.302 5 C -0.018 4.018 6 C -0.049 4.049 7 C -0.219 4.219 8 C -0.096 4.096 9 C -0.240 4.240 10 C 0.106 3.894 11 O -0.123 6.123 12 C -0.464 4.464 13 H 0.123 0.877 14 C -0.140 4.140 15 N -0.520 5.520 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.183 1.183 20 C -0.184 4.184 21 C -0.031 4.031 22 H 0.062 0.938 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.098 4.098 26 N -0.278 5.278 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.096 0.904 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.674 6.121 18.160 22.976 hybrid contribution -0.678 -0.817 0.112 1.068 sum -13.352 5.304 18.271 23.244 Atomic orbital electron populations 1.22536 0.97500 1.02077 1.02230 1.21555 0.91464 0.98472 0.89814 0.89874 1.60473 1.57124 1.09457 1.03106 1.20787 0.98707 0.94425 0.87919 1.19174 0.92646 0.98112 0.94992 1.20481 0.97860 1.05330 0.98246 1.20734 0.94834 0.97630 0.96440 1.21292 0.93086 1.06651 1.02946 1.19108 0.84018 0.93525 0.92784 1.83577 1.18577 1.61263 1.48921 1.20758 0.93814 1.26162 1.05662 0.87718 1.24459 0.96931 0.96030 0.96579 1.69652 1.17511 1.36728 1.28130 0.86183 0.79752 0.80969 0.80034 1.19873 1.20867 1.18293 1.20037 0.94728 1.05824 0.97798 1.22399 0.89564 0.97297 0.93835 0.93804 1.22337 0.97628 1.00793 0.95068 1.22275 0.95908 1.00242 0.97808 1.22912 0.99812 0.97354 0.89702 1.63470 1.08903 1.48380 1.07003 0.92075 0.92424 0.92546 0.84356 0.95027 0.90443 0.87998 0.87393 0.85124 0.91118 0.86397 0.91073 0.91723 0.91217 0.91795 0.94731 0.90371 0.83456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.02 37.16 0.34 -1.18 16 2 C 0.10 0.98 2.28 -67.72 -0.15 0.83 16 3 H 0.08 0.92 7.66 -51.93 -0.40 0.53 16 4 N -0.67 -8.13 6.03 -107.99 -0.65 -8.78 16 5 C 0.11 1.47 5.61 -4.98 -0.03 1.44 16 6 C -0.05 -0.82 5.39 -104.65 -0.56 -1.38 16 7 C -0.20 -3.30 9.70 -39.54 -0.38 -3.69 16 8 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 9 C -0.22 -4.81 9.17 -39.39 -0.36 -5.18 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 O -0.22 -5.86 8.59 0.06 0.00 -5.86 16 12 C -0.39 -11.10 9.95 30.89 0.31 -10.79 16 13 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 14 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 15 N -0.88 -25.79 13.96 55.48 0.77 -25.02 16 16 Si 0.91 22.07 28.62 -169.99 -4.86 17.21 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.16 -3.32 9.64 -39.40 -0.38 -3.70 16 21 C 0.08 0.78 2.88 -66.07 -0.19 0.59 16 22 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 23 C -0.12 -0.99 5.77 -25.35 -0.15 -1.13 16 24 C -0.12 -1.02 7.00 -25.35 -0.18 -1.19 16 25 C 0.03 0.30 7.47 -2.19 -0.02 0.29 16 26 N -0.65 -7.38 7.08 -102.76 -0.73 -8.11 16 27 H 0.06 0.44 7.55 -51.93 -0.39 0.05 16 28 H 0.06 0.49 7.45 -51.93 -0.39 0.10 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.34 4.00 8.46 -39.29 -0.33 3.67 16 31 H 0.03 0.38 7.38 -51.93 -0.38 0.00 16 32 H 0.08 1.07 8.00 -51.93 -0.42 0.65 16 33 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 35 H 0.13 3.00 5.64 -52.48 -0.30 2.71 16 36 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 38 H 0.07 0.59 7.76 -51.93 -0.40 0.18 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.35 4.26 8.92 -39.29 -0.35 3.91 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -29.32 355.40 -9.63 -38.95 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.01 Total: 8.03 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -2.51 Total: -21.79 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.60 Total: -41.90 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: 0.00 Total: -5.86 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.86 Total: 17.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.32 -9.63 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327840413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.882 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds