Wall clock time and date at job start Tue Mar 31 2020 08:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46959 * 2 1 4 4 N 1.46891 * 109.47543 * 239.99501 * 2 1 3 5 5 C 1.46900 * 111.00256 * 84.99902 * 4 2 1 6 6 C 1.50700 * 109.47426 * 180.02562 * 5 4 2 7 7 C 1.38323 * 119.96407 * 90.00195 * 6 5 4 8 8 C 1.38278 * 120.13907 * 179.97438 * 7 6 5 9 9 C 1.38122 * 120.06767 * 359.97438 * 8 7 6 10 10 C 1.38859 * 119.93112 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.06643 * 180.02562 * 10 9 8 12 12 C 1.34824 * 117.00328 * 354.45880 * 11 10 9 13 13 H 1.07997 * 120.00013 * 5.05584 * 12 11 10 14 14 C 1.38655 * 120.00077 * 185.06051 * 12 11 10 15 15 N 1.31564 * 120.00084 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00132 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47092 * 89.99938 * 16 14 12 18 18 H 1.48491 * 109.47159 * 210.00336 * 16 14 12 19 19 H 1.48503 * 109.46916 * 330.00356 * 16 14 12 20 20 C 1.38073 * 119.96659 * 269.72685 * 6 5 4 21 21 C 1.53003 * 109.46930 * 119.99391 * 2 1 3 22 22 H 1.08996 * 110.36417 * 54.10309 * 21 2 1 23 23 C 1.54383 * 110.41379 * 291.62561 * 21 2 1 24 24 C 1.54249 * 105.06309 * 217.36792 * 23 21 2 25 25 C 1.54380 * 105.06034 * 0.02562 * 24 23 21 26 26 N 1.48557 * 110.41001 * 176.45393 * 21 2 1 27 27 H 1.08999 * 109.46985 * 300.00569 * 1 2 3 28 28 H 1.08999 * 109.46705 * 60.00387 * 1 2 3 29 29 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 30 30 H 1.00901 * 110.99782 * 321.04716 * 4 2 1 31 31 H 1.09006 * 109.46893 * 300.00588 * 5 4 2 32 32 H 1.09000 * 109.47307 * 59.99881 * 5 4 2 33 33 H 1.08001 * 119.93146 * 0.02562 * 7 6 5 34 34 H 1.08006 * 119.96608 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.03222 * 180.02562 * 9 8 7 36 36 H 0.96998 * 119.99794 * 179.97438 * 15 14 12 37 37 H 1.07997 * 120.03296 * 0.02562 * 20 6 5 38 38 H 1.09001 * 110.32107 * 336.26944 * 23 21 2 39 39 H 1.09002 * 110.32090 * 98.36895 * 23 21 2 40 40 H 1.09003 * 110.32493 * 118.89806 * 24 23 21 41 41 H 1.08999 * 110.32813 * 241.00357 * 24 23 21 42 42 H 1.09006 * 110.41200 * 265.07223 * 25 24 23 43 43 H 1.09004 * 110.41544 * 142.63625 * 25 24 23 44 44 H 1.00901 * 111.00602 * 277.81666 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0826 0.2224 -2.3468 6 6 2.5875 -0.5221 -3.5559 7 6 1.6934 -1.1525 -4.4023 8 6 2.1527 -1.8361 -5.5130 9 6 3.5066 -1.8911 -5.7808 10 6 4.4068 -1.2593 -4.9330 11 8 5.7380 -1.3111 -5.1939 12 6 6.1300 -2.0864 -6.2249 13 1 5.3921 -2.5658 -6.8511 14 6 7.4804 -2.2683 -6.4813 15 7 7.8630 -3.0252 -7.4870 16 14 8.7567 -1.4386 -5.3986 17 1 9.1047 -2.3356 -4.2674 18 1 9.9752 -1.1549 -6.1984 19 1 8.2046 -0.1658 -4.8692 20 6 3.9418 -0.5695 -3.8207 21 6 2.0400 -0.7211 1.2494 22 1 1.6015 -1.7166 1.3182 23 6 1.7167 0.1011 2.5154 24 6 2.9383 -0.0868 3.4382 25 6 3.8973 -1.0062 2.6519 26 7 3.5228 -0.8084 1.2282 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.4496 -1.4980 -1.4098 31 1 1.0871 0.6161 -2.5525 32 1 2.7589 1.0461 -2.1183 33 1 0.6342 -1.1099 -4.1957 34 1 1.4521 -2.3277 -6.1718 35 1 3.8647 -2.4249 -6.6487 36 1 8.8077 -3.1522 -7.6666 37 1 4.6391 -0.0737 -3.1617 38 1 1.5923 1.1538 2.2615 39 1 0.8156 -0.2810 2.9951 40 1 3.4137 0.8737 3.6374 41 1 2.6377 -0.5606 4.3726 42 1 3.7499 -2.0466 2.9421 43 1 4.9323 -0.7074 2.8183 44 1 3.8315 -1.5843 0.6618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327840413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:41 Heat of formation + Delta-G solvation = -24.000906 kcal Electronic energy + Delta-G solvation = -22685.151192 eV Core-core repulsion = 19408.673136 eV Total energy + Delta-G solvation = -3276.478056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90724 -39.89062 -38.61895 -36.82932 -34.45450 -33.23705 -31.27960 -31.05015 -30.17655 -28.39706 -27.28852 -25.93008 -23.31499 -23.25769 -22.08864 -21.79330 -20.80847 -19.63668 -18.84853 -17.62159 -16.88657 -16.66765 -16.64278 -16.06783 -15.84253 -15.57017 -15.43640 -14.99177 -14.69152 -14.53909 -14.19979 -14.01255 -13.75805 -13.65719 -13.47117 -13.02070 -12.96298 -12.75078 -12.55264 -12.48094 -12.37111 -12.34716 -12.13976 -11.94916 -11.90120 -11.66378 -11.33730 -11.21319 -10.90385 -9.68329 -9.42328 -9.17054 -9.00039 -8.49634 -6.21855 0.52796 0.71688 1.30927 1.35286 1.52063 2.28620 2.75009 2.98747 3.16880 3.32001 3.46575 3.90842 3.92532 4.01970 4.11216 4.17597 4.21361 4.31725 4.38934 4.45708 4.50269 4.56085 4.59936 4.69705 4.72188 4.77196 4.85709 4.95770 5.01162 5.04825 5.05441 5.12142 5.25489 5.27491 5.30845 5.31928 5.41514 5.69896 5.76288 5.81144 5.93411 6.00708 6.18435 6.29469 6.49597 6.60320 6.85315 7.61593 8.62208 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.003664 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.414233 B = 7640.860263 C = 9057.132078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 H 0.073 0.927 4 N -0.682 5.682 5 C 0.118 3.882 6 C -0.037 4.037 7 C -0.173 4.173 8 C -0.076 4.076 9 C -0.240 4.240 10 C 0.118 3.882 11 O -0.248 6.248 12 C -0.398 4.398 13 H 0.081 0.919 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.969 3.031 17 H -0.266 1.266 18 H -0.266 1.266 19 H -0.265 1.265 20 C -0.170 4.170 21 C 0.079 3.921 22 H 0.044 0.956 23 C -0.116 4.116 24 C -0.122 4.122 25 C 0.029 3.971 26 N -0.667 5.667 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.342 0.658 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.284 0.716 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.705 6.401 20.566 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.008 4.008 3 H 0.091 0.909 4 N -0.313 5.313 5 C -0.011 4.011 6 C -0.038 4.038 7 C -0.192 4.192 8 C -0.094 4.094 9 C -0.259 4.259 10 C 0.070 3.930 11 O -0.156 6.156 12 C -0.474 4.474 13 H 0.099 0.901 14 C -0.188 4.188 15 N -0.565 5.565 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.190 1.190 19 H -0.190 1.190 20 C -0.189 4.189 21 C -0.032 4.032 22 H 0.062 0.938 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.101 4.101 26 N -0.296 5.296 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.520 7.244 20.664 26.839 hybrid contribution -0.139 -1.134 -0.548 1.267 sum -15.660 6.109 20.116 26.215 Atomic orbital electron populations 1.22453 0.95577 1.02608 1.02962 1.21539 0.92875 0.97560 0.88839 0.90906 1.60394 1.58099 1.09613 1.03193 1.20709 0.99689 0.93889 0.86794 1.19610 0.91173 0.96940 0.96034 1.21009 1.00012 1.02043 0.96132 1.21102 0.93443 0.97396 0.97475 1.21317 0.94965 1.07236 1.02407 1.19640 0.83224 0.95513 0.94642 1.83520 1.20612 1.62468 1.48972 1.20712 0.93883 1.26609 1.06214 0.90144 1.25248 0.98721 0.96815 0.97967 1.69730 1.18257 1.38665 1.29897 0.85244 0.77587 0.79537 0.78509 1.19140 1.19023 1.18961 1.20243 0.96480 1.05443 0.96776 1.22459 0.88600 0.97580 0.94518 0.93815 1.22343 0.98239 1.00615 0.94287 1.22286 0.95542 0.99965 0.98255 1.22963 1.00007 0.98021 0.89098 1.63506 1.10156 1.48059 1.07889 0.90818 0.92256 0.92071 0.83955 0.92405 0.90973 0.83468 0.84220 0.87625 0.90595 0.86631 0.91001 0.90047 0.91345 0.90249 0.94314 0.90916 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.02 71.98 0.65 -1.56 16 2 C 0.10 1.76 2.28 44.92 0.10 1.86 16 3 H 0.07 1.43 7.66 -2.38 -0.02 1.41 16 4 N -0.68 -14.57 6.03 -495.58 -2.99 -17.56 16 5 C 0.12 2.75 5.61 85.56 0.48 3.23 16 6 C -0.04 -1.15 5.39 -19.88 -0.11 -1.26 16 7 C -0.17 -5.01 9.70 22.30 0.22 -4.80 16 8 C -0.08 -2.61 10.04 22.25 0.22 -2.38 16 9 C -0.24 -10.76 9.17 22.39 0.21 -10.55 16 10 C 0.12 5.74 6.65 22.58 0.15 5.89 16 11 O -0.25 -13.98 8.59 -22.69 -0.19 -14.18 16 12 C -0.40 -24.11 9.95 67.92 0.68 -23.43 16 13 H 0.08 5.09 5.44 -2.91 -0.02 5.07 16 14 C 0.01 0.63 5.49 84.83 0.47 1.10 16 15 N -0.92 -56.33 13.96 21.61 0.30 -56.02 16 16 Si 0.97 46.93 28.62 68.60 1.96 48.89 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 20 C -0.17 -6.83 9.64 22.39 0.22 -6.62 16 21 C 0.08 1.37 2.88 45.07 0.13 1.50 16 22 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 23 C -0.12 -1.59 5.77 31.49 0.18 -1.41 16 24 C -0.12 -1.74 7.00 31.49 0.22 -1.51 16 25 C 0.03 0.51 7.47 86.45 0.65 1.15 16 26 N -0.67 -14.45 7.08 -479.03 -3.39 -17.84 16 27 H 0.07 0.76 7.55 -2.39 -0.02 0.74 16 28 H 0.06 0.74 7.45 -2.39 -0.02 0.72 16 29 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.34 6.88 8.46 -89.69 -0.76 6.12 16 31 H 0.06 1.10 7.38 -2.38 -0.02 1.08 16 32 H 0.07 1.81 8.00 -2.39 -0.02 1.79 16 33 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.11 5.22 5.64 -2.91 -0.02 5.20 16 36 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 37 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.07 0.98 7.76 -2.39 -0.02 0.96 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.34 8.13 8.92 -89.69 -0.80 7.33 16 Total: -1.00 -67.15 355.40 -0.41 -67.56 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.56 Total: 27.94 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 4.45 Total: -38.79 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -6.08 Total: -91.43 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.19 Total: -14.18 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.96 Total: 48.89 kcal Total: -67.15 -0.41 -67.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327840413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.559 kcal (2) G-P(sol) polarization free energy of solvation -67.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds