Wall clock time and date at job start Tue Mar 31 2020 07:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47377 * 2 1 4 4 C 1.52998 * 109.47129 * 120.00742 * 2 1 3 5 5 C 1.50707 * 109.46750 * 294.99503 * 4 2 1 6 6 H 1.07994 * 120.00219 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99835 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00068 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99845 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46834 * 59.99903 * 9 7 5 11 11 H 1.48500 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46953 * 299.99523 * 9 7 5 13 13 C 1.53001 * 109.47119 * 240.00144 * 2 1 3 14 14 N 1.46508 * 109.46882 * 65.00006 * 13 2 1 15 15 C 1.39677 * 119.99667 * 180.02562 * 14 13 2 16 16 C 1.38912 * 120.07048 * 179.97438 * 15 14 13 17 17 C 1.38099 * 119.92393 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.07607 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.92896 * 179.71980 * 18 17 16 20 20 C 1.53007 * 109.46917 * 89.99749 * 19 18 17 21 21 C 1.50706 * 109.46916 * 180.02562 * 20 19 18 22 22 N 1.34771 * 119.99849 * 179.97438 * 21 20 19 23 23 O 1.21278 * 119.99660 * 0.02562 * 21 20 19 24 24 C 1.38288 * 120.14912 * 359.97438 * 18 17 16 25 25 C 1.38107 * 120.07582 * 0.02562 * 24 18 17 26 26 H 1.08999 * 109.47377 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47179 * 299.99765 * 1 2 3 28 28 H 1.09001 * 109.47124 * 59.99648 * 1 2 3 29 29 H 1.08993 * 109.47494 * 54.99382 * 4 2 1 30 30 H 1.09003 * 109.47201 * 175.00404 * 4 2 1 31 31 H 0.97001 * 119.99826 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47206 * 305.00179 * 13 2 1 33 33 H 1.09000 * 109.47461 * 185.00205 * 13 2 1 34 34 H 0.96993 * 119.99599 * 359.97438 * 14 13 2 35 35 H 1.08001 * 120.03609 * 0.02562 * 16 15 14 36 36 H 1.07995 * 119.96581 * 179.97438 * 17 16 15 37 37 H 1.08994 * 109.47500 * 209.99743 * 19 18 17 38 38 H 1.09002 * 109.47378 * 330.00236 * 19 18 17 39 39 H 1.08998 * 109.47471 * 300.00440 * 20 19 18 40 40 H 1.09001 * 109.46973 * 60.00800 * 20 19 18 41 41 H 0.97006 * 120.00261 * 0.02562 * 22 21 20 42 42 H 0.96999 * 120.00054 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.96260 * 179.97438 * 24 18 17 44 44 H 1.07996 * 120.03841 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 1.6413 0.0569 2.4766 6 1 1.0800 0.9740 2.3758 7 6 1.9932 -0.4020 3.7282 8 7 2.6763 -1.5191 3.8510 9 14 1.4985 0.5624 5.2497 10 1 0.0185 0.6679 5.3092 11 1 1.9936 -0.1377 6.4621 12 1 2.0898 1.9232 5.1872 13 6 2.0400 -0.7212 -1.2493 14 7 1.6523 0.0355 -2.4424 15 6 2.0079 -0.4298 -3.7105 16 6 1.6408 0.2862 -4.8428 17 6 1.9935 -0.1769 -6.0951 18 6 2.7109 -1.3522 -6.2227 19 6 3.0886 -1.8577 -7.5912 20 6 4.4496 -1.2830 -7.9895 21 6 4.8270 -1.7881 -9.3583 22 7 5.9933 -1.4103 -9.9180 23 8 4.0807 -2.5339 -9.9564 24 6 3.0781 -2.0674 -5.0975 25 6 2.7286 -1.6100 -3.8421 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6053 -1.7199 1.2950 30 1 3.1263 -0.7996 1.2055 31 1 2.9242 -1.8416 4.7316 32 1 1.6053 -1.7197 -1.2952 33 1 3.1263 -0.7995 -1.2057 34 1 1.1482 0.8591 -2.3517 35 1 1.0801 1.2040 -4.7439 36 1 1.7080 0.3790 -6.9759 37 1 3.1449 -2.9461 -7.5737 38 1 2.3361 -1.5443 -8.3148 39 1 4.3934 -0.1946 -8.0069 40 1 5.2021 -1.5965 -7.2659 41 1 6.5901 -0.8135 -9.4397 42 1 6.2365 -1.7357 -10.7988 43 1 3.6380 -2.9851 -5.2007 44 1 3.0160 -2.1688 -2.9638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331041788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:59 Heat of formation + Delta-G solvation = -48.703613 kcal Electronic energy + Delta-G solvation = -21631.668748 eV Core-core repulsion = 18354.119502 eV Total energy + Delta-G solvation = -3277.549246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -39.93433 -39.27979 -36.87666 -34.64707 -33.98690 -32.88353 -31.76269 -30.79695 -28.63439 -26.91473 -25.97016 -24.15730 -23.14258 -22.14953 -20.90663 -20.31439 -19.30648 -17.64238 -17.21522 -16.88650 -16.54583 -15.94710 -15.37211 -15.01049 -14.58743 -14.52527 -14.16697 -13.91984 -13.65916 -13.33479 -13.09833 -12.95807 -12.77552 -12.50861 -12.22076 -11.79932 -11.54186 -11.32785 -11.22115 -10.94937 -10.90390 -10.73326 -10.44477 -10.36335 -10.28670 -10.04246 -9.97626 -9.58533 -9.32825 -9.08961 -8.80483 -8.39564 -7.12109 -6.04160 -4.06226 1.56787 1.70443 2.34823 3.23266 3.30026 3.35020 3.36765 3.74799 3.98473 4.42439 4.53803 4.80393 4.89528 5.04446 5.09307 5.25848 5.31542 5.39499 5.47065 5.54497 5.57309 5.66026 5.82297 5.88597 5.93681 6.04328 6.15655 6.18356 6.34527 6.39634 6.41372 6.49096 6.55244 6.80217 6.81503 6.96594 6.97193 6.99756 7.05818 7.58699 7.59370 7.72778 7.94017 7.94193 7.98856 8.36552 8.99165 9.57524 11.07132 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.038958 B = 0.002143 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.547582 B =13061.762204 C =13419.435630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.062 0.938 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.126 3.874 14 N -0.741 5.741 15 C 0.224 3.776 16 C -0.204 4.204 17 C -0.067 4.067 18 C -0.160 4.160 19 C -0.052 4.052 20 C -0.137 4.137 21 C 0.515 3.485 22 N -0.860 5.860 23 O -0.545 6.545 24 C -0.065 4.065 25 C -0.198 4.198 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.261 0.739 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.397 0.603 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.402 0.598 42 H 0.399 0.601 43 H 0.116 0.884 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 2.582 -23.621 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.080 0.920 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.002 3.998 14 N -0.368 5.368 15 C 0.119 3.881 16 C -0.226 4.226 17 C -0.085 4.085 18 C -0.162 4.162 19 C -0.090 4.090 20 C -0.177 4.177 21 C 0.300 3.700 22 N -0.424 5.424 23 O -0.422 6.422 24 C -0.083 4.083 25 C -0.221 4.221 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.232 0.768 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.230 0.770 42 H 0.229 0.771 43 H 0.134 0.866 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.005 1.861 -23.512 23.923 hybrid contribution 0.089 1.003 0.932 1.372 sum 4.094 2.864 -22.581 23.127 Atomic orbital electron populations 1.21720 0.95915 1.01119 1.00168 1.21440 0.95649 0.99785 0.94630 0.92007 1.19075 0.96246 0.95548 0.89841 1.21150 1.35087 1.08394 0.90926 0.92617 1.25020 0.95237 0.95091 0.99140 1.69948 1.38708 1.21086 1.23645 0.86667 0.78882 0.80081 0.82418 1.20281 1.21305 1.20283 1.21628 0.99025 0.95177 0.83942 1.45041 1.61053 1.27962 1.02719 1.17954 0.92173 0.92483 0.85524 1.20540 1.08258 1.02262 0.91587 1.20661 0.96463 0.95087 0.96316 1.19447 1.04834 0.97549 0.94410 1.20131 0.94708 1.00720 0.93420 1.21737 1.00077 1.02647 0.93254 1.20930 0.80695 0.79897 0.88432 1.43960 1.22438 1.53072 1.22927 1.90750 1.50876 1.36114 1.64450 1.20748 0.97596 0.98463 0.91527 1.20701 1.05577 0.97819 0.98011 0.93465 0.91773 0.95104 0.96305 0.96460 0.92920 0.92628 0.92576 0.76818 0.86624 0.86705 0.90824 0.90900 0.88723 0.88631 0.77007 0.77094 0.86564 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.88 37.16 0.33 -2.02 16 2 C -0.10 -1.83 2.37 -90.62 -0.22 -2.05 16 3 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 5 C -0.52 -14.01 8.41 -34.44 -0.29 -14.30 16 6 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 C 0.13 2.07 4.30 -4.04 -0.02 2.05 16 14 N -0.74 -10.55 5.46 -58.63 -0.32 -10.87 16 15 C 0.22 3.08 6.65 -83.79 -0.56 2.53 16 16 C -0.20 -2.47 9.90 -39.38 -0.39 -2.86 16 17 C -0.07 -0.73 9.69 -39.62 -0.38 -1.11 16 18 C -0.16 -1.74 5.14 -104.59 -0.54 -2.28 16 19 C -0.05 -0.49 4.63 -27.88 -0.13 -0.62 16 20 C -0.14 -0.99 5.68 -27.88 -0.16 -1.14 16 21 C 0.51 4.40 8.10 -10.98 -0.09 4.31 16 22 N -0.86 -4.08 8.87 31.22 0.28 -3.81 16 23 O -0.55 -7.12 16.82 5.56 0.09 -7.02 16 24 C -0.06 -0.76 9.69 -39.61 -0.38 -1.14 16 25 C -0.20 -2.67 9.31 -39.38 -0.37 -3.04 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 28 H 0.03 0.46 7.18 -51.93 -0.37 0.09 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 33 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 34 H 0.40 5.21 7.67 -40.82 -0.31 4.90 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.07 0.75 8.04 -51.93 -0.42 0.33 16 38 H 0.07 0.72 8.04 -51.93 -0.42 0.31 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.40 0.76 8.83 -40.82 -0.36 0.40 16 42 H 0.40 1.62 8.93 -40.82 -0.36 1.25 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.67 6.73 -52.49 -0.35 1.31 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -32.20 364.61 -9.24 -41.44 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.10 Total: 3.68 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -3.41 Total: -19.58 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.69 Total: -40.24 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.09 Total: -7.02 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.20 -9.24 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331041788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.262 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds