Wall clock time and date at job start Tue Mar 31 2020 07:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47377 * 2 1 4 4 C 1.52998 * 109.47129 * 120.00742 * 2 1 3 5 5 C 1.50707 * 109.46750 * 294.99503 * 4 2 1 6 6 H 1.07994 * 120.00219 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99835 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00068 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99845 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46834 * 59.99903 * 9 7 5 11 11 H 1.48500 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46953 * 299.99523 * 9 7 5 13 13 C 1.53001 * 109.47119 * 240.00144 * 2 1 3 14 14 N 1.46508 * 109.46882 * 65.00006 * 13 2 1 15 15 C 1.39677 * 119.99667 * 180.02562 * 14 13 2 16 16 C 1.38912 * 120.07048 * 179.97438 * 15 14 13 17 17 C 1.38099 * 119.92393 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.07607 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.92896 * 179.71980 * 18 17 16 20 20 C 1.53007 * 109.46917 * 89.99749 * 19 18 17 21 21 C 1.50706 * 109.46916 * 180.02562 * 20 19 18 22 22 N 1.34771 * 119.99849 * 179.97438 * 21 20 19 23 23 O 1.21278 * 119.99660 * 0.02562 * 21 20 19 24 24 C 1.38288 * 120.14912 * 359.97438 * 18 17 16 25 25 C 1.38107 * 120.07582 * 0.02562 * 24 18 17 26 26 H 1.08999 * 109.47377 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47179 * 299.99765 * 1 2 3 28 28 H 1.09001 * 109.47124 * 59.99648 * 1 2 3 29 29 H 1.08993 * 109.47494 * 54.99382 * 4 2 1 30 30 H 1.09003 * 109.47201 * 175.00404 * 4 2 1 31 31 H 0.97001 * 119.99826 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47206 * 305.00179 * 13 2 1 33 33 H 1.09000 * 109.47461 * 185.00205 * 13 2 1 34 34 H 0.96993 * 119.99599 * 359.97438 * 14 13 2 35 35 H 1.08001 * 120.03609 * 0.02562 * 16 15 14 36 36 H 1.07995 * 119.96581 * 179.97438 * 17 16 15 37 37 H 1.08994 * 109.47500 * 209.99743 * 19 18 17 38 38 H 1.09002 * 109.47378 * 330.00236 * 19 18 17 39 39 H 1.08998 * 109.47471 * 300.00440 * 20 19 18 40 40 H 1.09001 * 109.46973 * 60.00800 * 20 19 18 41 41 H 0.97006 * 120.00261 * 0.02562 * 22 21 20 42 42 H 0.96999 * 120.00054 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.96260 * 179.97438 * 24 18 17 44 44 H 1.07996 * 120.03841 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 1.6413 0.0569 2.4766 6 1 1.0800 0.9740 2.3758 7 6 1.9932 -0.4020 3.7282 8 7 2.6763 -1.5191 3.8510 9 14 1.4985 0.5624 5.2497 10 1 0.0185 0.6679 5.3092 11 1 1.9936 -0.1377 6.4621 12 1 2.0898 1.9232 5.1872 13 6 2.0400 -0.7212 -1.2493 14 7 1.6523 0.0355 -2.4424 15 6 2.0079 -0.4298 -3.7105 16 6 1.6408 0.2862 -4.8428 17 6 1.9935 -0.1769 -6.0951 18 6 2.7109 -1.3522 -6.2227 19 6 3.0886 -1.8577 -7.5912 20 6 4.4496 -1.2830 -7.9895 21 6 4.8270 -1.7881 -9.3583 22 7 5.9933 -1.4103 -9.9180 23 8 4.0807 -2.5339 -9.9564 24 6 3.0781 -2.0674 -5.0975 25 6 2.7286 -1.6100 -3.8421 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6053 -1.7199 1.2950 30 1 3.1263 -0.7996 1.2055 31 1 2.9242 -1.8416 4.7316 32 1 1.6053 -1.7197 -1.2952 33 1 3.1263 -0.7995 -1.2057 34 1 1.1482 0.8591 -2.3517 35 1 1.0801 1.2040 -4.7439 36 1 1.7080 0.3790 -6.9759 37 1 3.1449 -2.9461 -7.5737 38 1 2.3361 -1.5443 -8.3148 39 1 4.3934 -0.1946 -8.0069 40 1 5.2021 -1.5965 -7.2659 41 1 6.5901 -0.8135 -9.4397 42 1 6.2365 -1.7357 -10.7988 43 1 3.6380 -2.9851 -5.2007 44 1 3.0160 -2.1688 -2.9638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331041788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:51 Heat of formation + Delta-G solvation = -69.603394 kcal Electronic energy + Delta-G solvation = -21632.575030 eV Core-core repulsion = 18354.119502 eV Total energy + Delta-G solvation = -3278.455528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 7.67 seconds Orbital eigenvalues (eV) -40.71485 -40.16270 -38.20397 -35.97004 -34.63052 -34.39433 -33.10593 -31.72929 -29.75907 -28.63873 -27.25465 -25.30389 -24.54669 -23.30686 -21.74868 -21.06378 -20.85063 -18.54526 -18.19043 -18.13289 -17.65901 -16.91358 -16.51389 -16.26262 -16.06612 -15.81149 -15.02527 -14.94517 -14.77160 -14.39331 -14.24378 -14.10119 -14.06595 -13.71540 -13.53697 -13.35296 -12.88556 -12.77988 -12.60582 -12.27599 -12.10723 -12.09295 -12.00791 -11.65821 -11.57059 -11.16168 -11.04008 -11.02677 -10.66266 -10.59155 -10.53545 -9.73508 -8.17933 -8.16127 -6.27146 0.63434 0.76179 1.40922 1.43071 1.50732 1.71318 2.40785 2.62019 2.70722 3.06565 3.15837 3.95990 4.00711 4.06946 4.18038 4.19709 4.23387 4.29279 4.39073 4.52032 4.67756 4.69936 4.75815 4.77420 4.82498 4.92521 4.98327 5.08450 5.20996 5.26003 5.30309 5.32317 5.44530 5.50748 5.54424 5.61735 5.76287 5.85959 5.91328 5.95780 6.07675 6.26300 6.50542 6.52653 6.87974 6.95690 7.41112 7.41803 8.93783 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.038958 B = 0.002143 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.547582 B =13061.762204 C =13419.435630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.064 0.936 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.144 3.856 14 N -0.740 5.740 15 C 0.203 3.797 16 C -0.203 4.203 17 C -0.067 4.067 18 C -0.151 4.151 19 C -0.049 4.049 20 C -0.131 4.131 21 C 0.513 3.487 22 N -0.841 5.841 23 O -0.598 6.598 24 C -0.071 4.071 25 C -0.216 4.216 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.064 0.936 29 H -0.007 1.007 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.404 0.596 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.418 0.582 42 H 0.404 0.596 43 H 0.129 0.871 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.340 4.448 -24.967 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.104 4.104 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.574 5.574 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.019 3.981 14 N -0.369 5.369 15 C 0.099 3.901 16 C -0.225 4.225 17 C -0.085 4.085 18 C -0.153 4.153 19 C -0.087 4.087 20 C -0.170 4.170 21 C 0.299 3.701 22 N -0.405 5.405 23 O -0.479 6.479 24 C -0.089 4.089 25 C -0.239 4.239 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.011 0.989 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.239 0.761 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.249 0.751 42 H 0.235 0.765 43 H 0.147 0.853 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.904 3.769 -24.889 25.474 hybrid contribution 0.200 0.396 1.228 1.306 sum 4.104 4.165 -23.661 24.373 Atomic orbital electron populations 1.21632 0.94567 1.00951 1.01041 1.21203 0.96639 0.99210 0.93325 0.91800 1.18958 0.94480 0.94730 0.92189 1.21590 1.34623 1.08684 0.91935 0.91866 1.25952 0.95294 0.96103 1.02676 1.70090 1.40110 1.22850 1.24373 0.85562 0.78883 0.78774 0.78197 1.19285 1.21199 1.19231 1.21199 0.98215 0.94716 0.83960 1.44759 1.61858 1.28128 1.02170 1.18130 0.93221 0.93098 0.85615 1.20766 1.07880 1.02572 0.91314 1.20971 0.95710 0.95071 0.96797 1.19632 1.03814 0.97218 0.94666 1.20075 0.96077 1.00166 0.92389 1.21690 0.98968 1.03628 0.92740 1.21148 0.81016 0.79249 0.88688 1.43809 1.21402 1.52220 1.23037 1.90734 1.52714 1.38652 1.65778 1.20928 0.97729 0.99094 0.91189 1.20780 1.06479 0.98239 0.98431 0.94159 0.93281 0.91733 0.98884 0.99096 0.92933 0.93380 0.93568 0.76050 0.85009 0.84208 0.91902 0.91287 0.86720 0.87245 0.75068 0.76466 0.85306 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.88 71.98 0.64 -3.70 16 2 C -0.08 -3.26 2.37 -10.80 -0.03 -3.28 16 3 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.03 1.73 4.45 29.85 0.13 1.86 16 5 C -0.53 -29.09 8.41 25.60 0.22 -28.88 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 9 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 C 0.14 4.78 4.30 86.38 0.37 5.15 16 14 N -0.74 -20.38 5.46 -339.40 -1.85 -22.24 16 15 C 0.20 5.37 6.65 38.21 0.25 5.63 16 16 C -0.20 -4.45 9.90 22.40 0.22 -4.23 16 17 C -0.07 -1.28 9.69 22.25 0.22 -1.07 16 18 C -0.15 -2.99 5.14 -19.84 -0.10 -3.09 16 19 C -0.05 -0.85 4.63 29.85 0.14 -0.71 16 20 C -0.13 -1.56 5.68 29.85 0.17 -1.39 16 21 C 0.51 7.90 8.10 87.66 0.71 8.61 16 22 N -0.84 -6.11 8.87 -173.54 -1.54 -7.65 16 23 O -0.60 -15.29 16.82 -3.02 -0.05 -15.34 16 24 C -0.07 -1.59 9.69 22.25 0.22 -1.37 16 25 C -0.22 -5.79 9.31 22.40 0.21 -5.58 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.84 6.95 -2.39 -0.02 1.83 16 28 H 0.06 1.81 7.18 -2.39 -0.02 1.79 16 29 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.05 1.66 7.95 -2.39 -0.02 1.64 16 33 H 0.05 1.61 7.95 -2.39 -0.02 1.59 16 34 H 0.40 9.87 7.67 -92.71 -0.71 9.16 16 35 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.06 1.23 8.04 -2.39 -0.02 1.21 16 38 H 0.07 1.26 8.04 -2.39 -0.02 1.24 16 39 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.42 0.37 8.83 -92.70 -0.82 -0.45 16 42 H 0.40 2.51 8.93 -92.71 -0.83 1.68 16 43 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 44 H 0.11 3.12 6.73 -2.91 -0.02 3.10 16 Total: -1.00 -70.83 364.61 1.35 -69.48 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -1.34 Total: 17.76 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 3.83 Total: -31.75 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -3.11 Total: -85.84 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.05 Total: -15.34 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.83 1.35 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331041788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.122 kcal (2) G-P(sol) polarization free energy of solvation -70.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.67 seconds