Wall clock time and date at job start Tue Mar 31 2020 07:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.45547 * 2 1 4 4 N 1.46840 * 109.46342 * 119.98011 * 2 1 3 5 5 C 1.46847 * 111.20025 * 58.27427 * 4 2 1 6 6 C 1.53042 * 109.52185 * 61.73990 * 5 4 2 7 7 C 1.53120 * 109.27659 * 300.82264 * 6 5 4 8 8 C 1.53041 * 109.40923 * 240.06951 * 2 1 3 9 9 H 1.08997 * 109.45391 * 179.16109 * 8 2 1 10 10 N 1.46906 * 109.56005 * 59.03398 * 8 2 1 11 11 C 1.46893 * 110.99731 * 155.16828 * 10 8 2 12 12 C 1.50697 * 109.46888 * 180.02562 * 11 10 8 13 13 C 1.38326 * 119.96845 * 269.72686 * 12 11 10 14 14 C 1.38275 * 120.14253 * 179.76921 * 13 12 11 15 15 C 1.38122 * 120.06904 * 0.50293 * 14 13 12 16 16 C 1.38867 * 119.92585 * 359.75082 * 15 14 13 17 17 O 1.35751 * 120.06408 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00173 * 354.44221 * 17 16 15 19 19 H 1.07996 * 120.00058 * 5.06028 * 18 17 16 20 20 C 1.38663 * 119.99965 * 185.05555 * 18 17 16 21 21 N 1.31555 * 119.99475 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46796 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47005 * 119.99840 * 22 20 18 25 25 H 1.48495 * 109.47164 * 239.99903 * 22 20 18 26 26 C 1.38081 * 119.96839 * 90.00339 * 12 11 10 27 27 H 1.09004 * 109.46580 * 300.01554 * 1 2 3 28 28 H 1.08992 * 109.47088 * 60.01807 * 1 2 3 29 29 H 1.08996 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.00908 * 111.00118 * 294.17144 * 4 2 1 31 31 H 1.09003 * 109.46010 * 301.72536 * 5 4 2 32 32 H 1.08997 * 109.45571 * 181.74935 * 5 4 2 33 33 H 1.08998 * 109.50328 * 180.88153 * 6 5 4 34 34 H 1.09003 * 109.53494 * 60.78311 * 6 5 4 35 35 H 1.09005 * 109.51863 * 177.55905 * 7 6 5 36 36 H 1.09004 * 109.52180 * 297.68441 * 7 6 5 37 37 H 1.00896 * 110.99697 * 279.12432 * 10 8 2 38 38 H 1.09001 * 109.47429 * 299.99953 * 11 10 8 39 39 H 1.09000 * 109.47276 * 60.00692 * 11 10 8 40 40 H 1.08003 * 119.92588 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.97228 * 180.23935 * 14 13 12 42 42 H 1.08001 * 120.03923 * 179.72497 * 15 14 13 43 43 H 0.97002 * 119.99914 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.03153 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 7 2.0193 -0.6918 1.1992 5 6 1.5175 -2.0706 1.2588 6 6 2.0270 -2.8531 0.0463 7 6 1.5443 -2.1693 -1.2359 8 6 2.0386 -0.7202 -1.2509 9 1 3.1285 -0.7076 -1.2592 10 7 1.5303 -0.0411 -2.4503 11 6 2.4059 -0.2851 -3.6043 12 6 1.8540 0.4261 -4.8128 13 6 0.9647 -0.2229 -5.6503 14 6 0.4524 0.4278 -6.7575 15 6 0.8354 1.7253 -7.0364 16 6 1.7319 2.3778 -6.2005 17 8 2.1098 3.6532 -6.4716 18 6 1.6696 4.1894 -7.6277 19 1 0.9800 3.6388 -8.2503 20 6 2.1022 5.4479 -8.0173 21 7 2.9426 6.1184 -7.2590 22 14 1.4917 6.1912 -9.6186 23 1 0.5609 5.2427 -10.2813 24 1 0.7814 7.4640 -9.3344 25 1 2.6470 6.4580 -10.5126 26 6 2.2408 1.7232 -5.0862 27 1 -0.3632 0.5141 0.8899 28 1 -0.3633 0.5135 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.7761 -0.1820 2.0354 31 1 0.4275 -2.0609 1.2530 32 1 1.8716 -2.5466 2.1732 33 1 1.6416 -3.8720 0.0826 34 1 3.1167 -2.8756 0.0587 35 1 1.9409 -2.6986 -2.1024 36 1 0.4548 -2.1830 -1.2680 37 1 0.5820 -0.3218 -2.6501 38 1 3.4059 0.0904 -3.3874 39 1 2.4549 -1.3556 -3.8033 40 1 0.6675 -1.2391 -5.4370 41 1 -0.2447 -0.0803 -7.4074 42 1 0.4383 2.2316 -7.9038 43 1 3.2455 6.9986 -7.5317 44 1 2.9382 2.2281 -4.4342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332399602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:24 Heat of formation + Delta-G solvation = -5.875741 kcal Electronic energy + Delta-G solvation = -22773.215671 eV Core-core repulsion = 19497.523581 eV Total energy + Delta-G solvation = -3275.692090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.77127 -38.95794 -36.83217 -35.05796 -32.40914 -32.26848 -31.45395 -29.49952 -28.71794 -26.92174 -25.45966 -24.54420 -23.22963 -22.09105 -21.60003 -20.60199 -18.91453 -17.63920 -17.03755 -16.84490 -15.65590 -15.19816 -15.08116 -14.76076 -14.51522 -14.25924 -14.01920 -13.72928 -13.55298 -13.35396 -13.17536 -13.16883 -12.70752 -12.32532 -12.21543 -11.96326 -11.88722 -11.57666 -11.27780 -11.16882 -11.12392 -10.83932 -10.75563 -10.63938 -10.50392 -10.45489 -10.32954 -9.29820 -8.82230 -8.62591 -8.29736 -8.02460 -7.20355 -6.41623 -4.00593 2.14711 2.39886 3.13981 3.15428 3.20980 3.88109 3.99004 4.37429 4.59542 4.64005 4.70746 4.79301 5.02404 5.09313 5.10417 5.17655 5.26845 5.33699 5.40092 5.40870 5.48495 5.55713 5.65844 5.68566 5.71671 5.81987 5.90162 5.91917 5.96192 5.97698 6.09318 6.20876 6.25028 6.40325 6.69556 6.83405 6.95697 7.10150 7.13355 7.19885 7.32846 7.37762 7.47113 7.52001 7.85579 8.03530 9.04125 9.75369 10.76598 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029649 B = 0.002919 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.163522 B = 9590.825456 C =10102.219397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.095 3.905 3 H 0.091 0.909 4 N -0.685 5.685 5 C 0.053 3.947 6 C -0.113 4.113 7 C -0.153 4.153 8 C 0.097 3.903 9 H 0.084 0.916 10 N -0.675 5.675 11 C 0.108 3.892 12 C -0.048 4.048 13 C -0.208 4.208 14 C -0.076 4.076 15 C -0.233 4.233 16 C 0.152 3.848 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.166 4.166 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.343 0.657 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.342 0.658 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.269 0.731 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.994 -15.686 12.837 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.016 4.016 3 H 0.109 0.891 4 N -0.316 5.316 5 C -0.076 4.076 6 C -0.151 4.151 7 C -0.192 4.192 8 C -0.014 4.014 9 H 0.102 0.898 10 N -0.306 5.306 11 C -0.020 4.020 12 C -0.048 4.048 13 C -0.227 4.227 14 C -0.095 4.095 15 C -0.252 4.252 16 C 0.099 3.901 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.185 4.185 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.160 0.840 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.830 -14.856 12.821 19.827 hybrid contribution -1.617 -0.434 -0.878 1.890 sum -4.447 -15.290 11.944 19.905 Atomic orbital electron populations 1.22531 0.97800 1.01679 1.02659 1.21471 0.92573 0.98235 0.89291 0.89135 1.60409 1.63326 1.02839 1.05054 1.21932 0.97368 0.89795 0.98531 1.21503 1.01647 0.97998 0.93960 1.22373 1.01030 0.97696 0.98147 1.21515 0.99960 0.90032 0.89846 0.89774 1.60474 1.05817 1.61264 1.02998 1.20809 0.96585 0.96718 0.87897 1.19162 0.97128 0.93682 0.94867 1.20411 1.04030 0.99600 0.98671 1.20681 0.98184 0.94242 0.96349 1.21182 1.04205 0.96367 1.03478 1.19363 0.92098 0.85507 0.93170 1.83984 1.65042 1.20597 1.38615 1.21360 1.27339 1.00987 0.97032 0.89107 1.25281 0.96250 0.95710 0.99316 1.70052 1.30049 1.12765 1.36911 0.85658 0.78583 0.79129 0.80112 1.19156 1.20173 1.20167 1.20031 1.05359 0.94401 0.98755 0.93200 0.90905 0.92639 0.83937 0.94842 0.91165 0.91913 0.91191 0.91956 0.91865 0.83959 0.90453 0.94884 0.88174 0.87650 0.85697 0.92119 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 8.30 37.16 0.31 -1.50 16 2 C 0.09 0.98 3.41 -67.72 -0.23 0.75 16 3 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 4 N -0.69 -6.21 6.65 -106.76 -0.71 -6.92 16 5 C 0.05 0.43 6.25 -3.83 -0.02 0.40 16 6 C -0.11 -0.94 6.10 -26.65 -0.16 -1.10 16 7 C -0.15 -1.44 4.94 -26.61 -0.13 -1.57 16 8 C 0.10 1.06 2.33 -67.63 -0.16 0.91 16 9 H 0.08 1.02 7.80 -51.93 -0.41 0.62 16 10 N -0.68 -8.69 5.73 -107.91 -0.62 -9.31 16 11 C 0.11 1.53 5.61 -4.98 -0.03 1.51 16 12 C -0.05 -0.85 5.39 -104.65 -0.56 -1.41 16 13 C -0.21 -3.57 9.70 -39.54 -0.38 -3.96 16 14 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 15 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 16 C 0.15 3.73 6.65 -39.11 -0.26 3.47 16 17 O -0.18 -5.18 9.76 0.05 0.00 -5.18 16 18 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 19 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 22 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 26 C -0.17 -3.56 9.64 -39.40 -0.38 -3.94 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.79 7.18 -51.93 -0.37 0.42 16 29 H 0.05 0.51 4.80 -51.93 -0.25 0.26 16 30 H 0.34 2.64 8.90 -39.29 -0.35 2.29 16 31 H 0.03 0.27 6.19 -51.93 -0.32 -0.05 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.60 7.52 -51.93 -0.39 0.21 16 36 H 0.06 0.59 6.52 -51.93 -0.34 0.25 16 37 H 0.34 4.30 7.68 -39.29 -0.30 3.99 16 38 H 0.08 1.11 8.00 -51.93 -0.42 0.70 16 39 H 0.03 0.42 7.43 -51.93 -0.39 0.04 16 40 H 0.10 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -30.07 345.25 -9.58 -39.65 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.62 Total: 9.21 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -2.58 Total: -23.55 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.57 Total: -41.04 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.07 -9.58 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332399602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.776 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds