Wall clock time and date at job start Tue Mar 31 2020 07:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.45547 * 2 1 4 4 N 1.46840 * 109.46342 * 119.98011 * 2 1 3 5 5 C 1.46847 * 111.20025 * 58.27427 * 4 2 1 6 6 C 1.53042 * 109.52185 * 61.73990 * 5 4 2 7 7 C 1.53120 * 109.27659 * 300.82264 * 6 5 4 8 8 C 1.53041 * 109.40923 * 240.06951 * 2 1 3 9 9 H 1.08997 * 109.45391 * 179.16109 * 8 2 1 10 10 N 1.46906 * 109.56005 * 59.03398 * 8 2 1 11 11 C 1.46893 * 110.99731 * 155.16828 * 10 8 2 12 12 C 1.50697 * 109.46888 * 180.02562 * 11 10 8 13 13 C 1.38326 * 119.96845 * 269.72686 * 12 11 10 14 14 C 1.38275 * 120.14253 * 179.76921 * 13 12 11 15 15 C 1.38122 * 120.06904 * 0.50293 * 14 13 12 16 16 C 1.38867 * 119.92585 * 359.75082 * 15 14 13 17 17 O 1.35751 * 120.06408 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00173 * 354.44221 * 17 16 15 19 19 H 1.07996 * 120.00058 * 5.06028 * 18 17 16 20 20 C 1.38663 * 119.99965 * 185.05555 * 18 17 16 21 21 N 1.31555 * 119.99475 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46796 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47005 * 119.99840 * 22 20 18 25 25 H 1.48495 * 109.47164 * 239.99903 * 22 20 18 26 26 C 1.38081 * 119.96839 * 90.00339 * 12 11 10 27 27 H 1.09004 * 109.46580 * 300.01554 * 1 2 3 28 28 H 1.08992 * 109.47088 * 60.01807 * 1 2 3 29 29 H 1.08996 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.00908 * 111.00118 * 294.17144 * 4 2 1 31 31 H 1.09003 * 109.46010 * 301.72536 * 5 4 2 32 32 H 1.08997 * 109.45571 * 181.74935 * 5 4 2 33 33 H 1.08998 * 109.50328 * 180.88153 * 6 5 4 34 34 H 1.09003 * 109.53494 * 60.78311 * 6 5 4 35 35 H 1.09005 * 109.51863 * 177.55905 * 7 6 5 36 36 H 1.09004 * 109.52180 * 297.68441 * 7 6 5 37 37 H 1.00896 * 110.99697 * 279.12432 * 10 8 2 38 38 H 1.09001 * 109.47429 * 299.99953 * 11 10 8 39 39 H 1.09000 * 109.47276 * 60.00692 * 11 10 8 40 40 H 1.08003 * 119.92588 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.97228 * 180.23935 * 14 13 12 42 42 H 1.08001 * 120.03923 * 179.72497 * 15 14 13 43 43 H 0.97002 * 119.99914 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.03153 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 7 2.0193 -0.6918 1.1992 5 6 1.5175 -2.0706 1.2588 6 6 2.0270 -2.8531 0.0463 7 6 1.5443 -2.1693 -1.2359 8 6 2.0386 -0.7202 -1.2509 9 1 3.1285 -0.7076 -1.2592 10 7 1.5303 -0.0411 -2.4503 11 6 2.4059 -0.2851 -3.6043 12 6 1.8540 0.4261 -4.8128 13 6 0.9647 -0.2229 -5.6503 14 6 0.4524 0.4278 -6.7575 15 6 0.8354 1.7253 -7.0364 16 6 1.7319 2.3778 -6.2005 17 8 2.1098 3.6532 -6.4716 18 6 1.6696 4.1894 -7.6277 19 1 0.9800 3.6388 -8.2503 20 6 2.1022 5.4479 -8.0173 21 7 2.9426 6.1184 -7.2590 22 14 1.4917 6.1912 -9.6186 23 1 0.5609 5.2427 -10.2813 24 1 0.7814 7.4640 -9.3344 25 1 2.6470 6.4580 -10.5126 26 6 2.2408 1.7232 -5.0862 27 1 -0.3632 0.5141 0.8899 28 1 -0.3633 0.5135 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.7761 -0.1820 2.0354 31 1 0.4275 -2.0609 1.2530 32 1 1.8716 -2.5466 2.1732 33 1 1.6416 -3.8720 0.0826 34 1 3.1167 -2.8756 0.0587 35 1 1.9409 -2.6986 -2.1024 36 1 0.4548 -2.1830 -1.2680 37 1 0.5820 -0.3218 -2.6501 38 1 3.4059 0.0904 -3.3874 39 1 2.4549 -1.3556 -3.8033 40 1 0.6675 -1.2391 -5.4370 41 1 -0.2447 -0.0803 -7.4074 42 1 0.4383 2.2316 -7.9038 43 1 3.2455 6.9986 -7.5317 44 1 2.9382 2.2281 -4.4342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332399602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:23 Heat of formation + Delta-G solvation = -26.800652 kcal Electronic energy + Delta-G solvation = -22774.123043 eV Core-core repulsion = 19497.523581 eV Total energy + Delta-G solvation = -3276.599462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87911 -40.41181 -38.47861 -36.19640 -34.28272 -33.13484 -32.68366 -30.95823 -30.06079 -27.82258 -27.34422 -25.82969 -24.06878 -23.22138 -22.87640 -22.22943 -19.86586 -19.36897 -18.72916 -17.73714 -16.85327 -16.50245 -16.42606 -16.08036 -15.98786 -15.48502 -15.46522 -15.05290 -14.71022 -14.49649 -14.27639 -14.11783 -13.91709 -13.75352 -13.63828 -13.22789 -12.94956 -12.82662 -12.76817 -12.45916 -12.26531 -12.19160 -12.08318 -11.97858 -11.82318 -11.36989 -11.27307 -11.12587 -10.80768 -9.67215 -9.37352 -9.20241 -8.96046 -8.46003 -6.14527 0.54302 0.76113 1.34939 1.43667 1.53571 2.18180 2.77783 3.04491 3.25030 3.47542 3.62980 3.83601 3.88286 4.04884 4.07992 4.12736 4.25895 4.31914 4.34187 4.42761 4.55258 4.60734 4.63373 4.65171 4.71719 4.74647 4.78093 4.91031 5.01000 5.05143 5.11532 5.13124 5.14333 5.23258 5.31371 5.32795 5.48520 5.68460 5.75151 5.79026 6.01134 6.04603 6.20434 6.27514 6.49833 6.53914 6.98682 7.81088 8.77753 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029649 B = 0.002919 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.163522 B = 9590.825456 C =10102.219397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.097 3.903 3 H 0.069 0.931 4 N -0.692 5.692 5 C 0.052 3.948 6 C -0.111 4.111 7 C -0.147 4.147 8 C 0.100 3.900 9 H 0.070 0.930 10 N -0.685 5.685 11 C 0.115 3.885 12 C -0.037 4.037 13 C -0.182 4.182 14 C -0.071 4.071 15 C -0.245 4.245 16 C 0.112 3.888 17 O -0.235 6.235 18 C -0.412 4.412 19 H 0.101 0.899 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.183 4.183 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.350 0.650 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.346 0.654 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.272 0.728 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 -19.091 12.935 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.014 4.014 3 H 0.087 0.913 4 N -0.323 5.323 5 C -0.077 4.077 6 C -0.150 4.150 7 C -0.186 4.186 8 C -0.010 4.010 9 H 0.088 0.912 10 N -0.317 5.317 11 C -0.013 4.013 12 C -0.037 4.037 13 C -0.201 4.201 14 C -0.089 4.089 15 C -0.265 4.265 16 C 0.062 3.938 17 O -0.142 6.142 18 C -0.488 4.488 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.203 4.203 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.169 0.831 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.637 -18.324 12.951 22.913 hybrid contribution -1.091 0.309 -0.707 1.336 sum -5.727 -18.016 12.244 22.523 Atomic orbital electron populations 1.22450 0.97053 1.02142 1.02246 1.21338 0.93057 0.97225 0.89777 0.91322 1.60389 1.63571 1.03542 1.04846 1.21999 0.97640 0.88951 0.99069 1.21514 1.01213 0.98836 0.93432 1.22300 1.01259 0.96139 0.98883 1.21474 0.99110 0.91307 0.89105 0.91176 1.60384 1.05869 1.62356 1.03067 1.20735 0.96199 0.97542 0.86873 1.19567 0.96145 0.92014 0.95998 1.20972 1.01332 1.01124 0.96709 1.21126 0.98051 0.92631 0.97103 1.21303 1.04099 0.98027 1.03034 1.19911 0.93830 0.85056 0.95002 1.83946 1.67471 1.23116 1.39684 1.21860 1.27825 1.01713 0.97438 0.88138 1.26611 0.96305 0.95866 1.03419 1.70202 1.32611 1.13579 1.39664 0.84516 0.78386 0.78306 0.74892 1.17421 1.19348 1.19327 1.20206 1.05830 0.96125 0.98159 0.92636 0.92318 0.91622 0.83098 0.94358 0.89882 0.90213 0.91981 0.91741 0.91305 0.83460 0.91192 0.92156 0.83553 0.83672 0.86532 0.91891 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.30 71.98 0.60 -2.58 16 2 C 0.10 1.90 3.41 44.94 0.15 2.05 16 3 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 4 N -0.69 -11.44 6.65 -491.67 -3.27 -14.71 16 5 C 0.05 0.70 6.25 86.33 0.54 1.24 16 6 C -0.11 -1.53 6.10 30.65 0.19 -1.34 16 7 C -0.15 -2.31 4.94 30.67 0.15 -2.16 16 8 C 0.10 2.04 2.33 44.97 0.10 2.14 16 9 H 0.07 1.63 7.80 -2.39 -0.02 1.61 16 10 N -0.69 -16.50 5.73 -495.31 -2.84 -19.34 16 11 C 0.11 3.01 5.61 85.56 0.48 3.49 16 12 C -0.04 -1.24 5.39 -19.88 -0.11 -1.35 16 13 C -0.18 -5.52 9.70 22.30 0.22 -5.31 16 14 C -0.07 -2.41 10.04 22.25 0.22 -2.19 16 15 C -0.25 -10.84 9.17 22.39 0.21 -10.64 16 16 C 0.11 5.75 6.65 22.58 0.15 5.90 16 17 O -0.24 -14.60 9.76 -22.74 -0.22 -14.82 16 18 C -0.41 -24.55 9.49 67.92 0.64 -23.91 16 19 H 0.10 5.50 5.20 -2.91 -0.02 5.48 16 20 C -0.02 -1.44 5.49 84.84 0.47 -0.98 16 21 N -0.92 -57.82 13.67 21.62 0.30 -57.52 16 22 Si 1.02 43.62 29.55 68.60 2.03 45.65 16 23 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 26 C -0.18 -8.15 9.64 22.39 0.22 -7.93 16 27 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.06 1.20 7.18 -2.39 -0.02 1.19 16 29 H 0.06 1.02 4.80 -2.39 -0.01 1.01 16 30 H 0.35 4.88 8.90 -89.69 -0.80 4.09 16 31 H 0.04 0.49 6.19 -2.39 -0.01 0.47 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 1.00 7.52 -2.38 -0.02 0.98 16 36 H 0.07 1.03 6.52 -2.39 -0.02 1.02 16 37 H 0.35 7.77 7.68 -89.70 -0.69 7.08 16 38 H 0.07 1.96 8.00 -2.39 -0.02 1.94 16 39 H 0.06 1.29 7.43 -2.39 -0.02 1.27 16 40 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 41 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 42 H 0.12 5.25 5.64 -2.91 -0.02 5.24 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -70.78 345.25 -0.25 -71.03 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.47 Total: 33.28 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 4.23 Total: -43.56 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -5.81 Total: -91.58 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.22 Total: -14.82 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.78 -0.25 -71.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332399602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.226 kcal (2) G-P(sol) polarization free energy of solvation -70.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds