Wall clock time and date at job start Tue Mar 31 2020 07:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.45523 * 2 1 4 4 N 1.46850 * 109.46091 * 240.02581 * 2 1 3 5 5 C 1.46846 * 111.19792 * 178.24069 * 4 2 1 6 6 C 1.53036 * 109.52378 * 61.74571 * 5 4 2 7 7 C 1.53118 * 109.27289 * 300.81778 * 6 5 4 8 8 C 1.53030 * 109.46482 * 119.97481 * 2 1 3 9 9 H 1.08998 * 109.53845 * 59.23440 * 8 2 1 10 10 N 1.46902 * 109.50290 * 299.13531 * 8 2 1 11 11 C 1.46897 * 111.00148 * 155.20085 * 10 8 2 12 12 C 1.50698 * 109.47093 * 179.97438 * 11 10 8 13 13 C 1.38329 * 119.96702 * 89.99773 * 12 11 10 14 14 C 1.38277 * 120.13923 * 179.97438 * 13 12 11 15 15 C 1.38116 * 120.06825 * 0.04200 * 14 13 12 16 16 C 1.38856 * 119.93244 * 359.97438 * 15 14 13 17 17 O 1.35751 * 120.06699 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00369 * 354.47733 * 17 16 15 19 19 H 1.07998 * 120.00313 * 5.06007 * 18 17 16 20 20 C 1.38655 * 120.00287 * 185.06530 * 18 17 16 21 21 N 1.31563 * 119.99678 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00297 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47342 * 89.99533 * 22 20 18 24 24 H 1.48495 * 109.46950 * 209.99897 * 22 20 18 25 25 H 1.48503 * 109.46719 * 329.99527 * 22 20 18 26 26 C 1.38078 * 119.96676 * 270.01734 * 12 11 10 27 27 H 1.09000 * 109.47045 * 300.02836 * 1 2 3 28 28 H 1.08997 * 109.47390 * 60.02652 * 1 2 3 29 29 H 1.08999 * 109.47252 * 180.02562 * 1 2 3 30 30 H 1.00899 * 110.99691 * 302.34014 * 4 2 1 31 31 H 1.08999 * 109.46114 * 301.72357 * 5 4 2 32 32 H 1.09003 * 109.44975 * 181.75702 * 5 4 2 33 33 H 1.09000 * 109.50128 * 180.88219 * 6 5 4 34 34 H 1.08993 * 109.50372 * 60.75720 * 6 5 4 35 35 H 1.09001 * 109.52509 * 297.74823 * 7 6 5 36 36 H 1.09001 * 109.57315 * 177.59356 * 7 6 5 37 37 H 1.00895 * 110.99832 * 31.24187 * 10 8 2 38 38 H 1.09001 * 109.47740 * 59.99787 * 11 10 8 39 39 H 1.09000 * 109.46710 * 299.99457 * 11 10 8 40 40 H 1.07999 * 119.93012 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.96133 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.03396 * 179.70234 * 15 14 13 43 43 H 0.96998 * 119.99411 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.03511 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0192 -0.6918 -1.1994 5 6 3.4864 -0.6777 -1.2592 6 6 4.0548 -1.4189 -0.0469 7 6 3.5710 -0.7360 1.2354 8 6 2.0399 -0.7209 1.2499 9 1 1.6660 -1.7447 1.2583 10 7 1.5677 -0.0164 2.4493 11 6 1.5066 -0.9238 3.6029 12 6 1.0197 -0.1671 4.8119 13 6 -0.3345 -0.1002 5.0860 14 6 -0.7851 0.5926 6.1946 15 6 0.1163 1.2209 7.0314 16 6 1.4763 1.1559 6.7588 17 8 2.3647 1.7729 7.5792 18 6 1.8569 2.5266 8.5751 19 1 0.7903 2.5529 8.7426 20 6 2.7040 3.2682 9.3844 21 7 4.0034 3.2359 9.1808 22 14 2.0006 4.3120 10.7647 23 1 1.9258 3.5034 12.0079 24 1 2.8774 5.4887 10.9916 25 1 0.6393 4.7736 10.3917 26 6 1.9259 0.4590 5.6446 27 1 -0.3633 0.5143 0.8897 28 1 -0.3634 0.5134 -0.8902 29 1 -0.3634 -1.0276 0.0005 30 1 1.6646 -1.6354 -1.2425 31 1 3.8402 0.3532 -1.2533 32 1 3.8172 -1.1700 -2.1737 33 1 5.1439 -1.3947 -0.0834 34 1 3.7124 -2.4535 -0.0596 35 1 3.9457 0.2870 1.2670 36 1 3.9380 -1.2853 2.1024 37 1 0.6727 0.4191 2.2840 38 1 2.5000 -1.3258 3.8022 39 1 0.8203 -1.7422 3.3854 40 1 -1.0413 -0.5902 4.4327 41 1 -1.8430 0.6426 6.4061 42 1 -0.2365 1.7659 7.8945 43 1 4.5960 3.7544 9.7472 44 1 2.9830 0.4063 5.4302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332399603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:28 Heat of formation + Delta-G solvation = -10.075454 kcal Electronic energy + Delta-G solvation = -22759.970709 eV Core-core repulsion = 19484.096506 eV Total energy + Delta-G solvation = -3275.874203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -39.69648 -38.95905 -36.83508 -35.04018 -32.88939 -32.27684 -31.38895 -29.49465 -28.69447 -26.94915 -25.51748 -24.65672 -22.58645 -21.71247 -21.54036 -20.60309 -20.37874 -17.70010 -16.97881 -16.01149 -15.79900 -15.42721 -15.10081 -14.85214 -14.70071 -14.39503 -14.34292 -13.57819 -13.55085 -13.23475 -13.08290 -12.93358 -12.55832 -12.28904 -12.26444 -12.06543 -11.83457 -11.56783 -11.30344 -11.25730 -11.08235 -10.92306 -10.86973 -10.79406 -10.62926 -10.53265 -10.38250 -9.31687 -8.83502 -8.71439 -8.28612 -8.05311 -7.22060 -6.42604 -4.01712 2.12824 2.38195 3.13746 3.14802 3.19618 3.91061 3.98215 4.20793 4.54538 4.62902 4.69718 4.76964 4.97220 5.06930 5.08760 5.15337 5.17241 5.25585 5.35460 5.43661 5.54034 5.57968 5.59857 5.69210 5.74261 5.78659 5.86892 5.90259 5.93904 6.01203 6.03739 6.18246 6.21203 6.38253 6.67075 6.72252 6.93711 7.08179 7.10410 7.12460 7.30551 7.36151 7.45342 7.50008 7.83712 8.02352 9.03025 9.73844 10.75529 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.003061 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.169842 B = 9146.588029 C = 9803.422590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 H 0.090 0.910 4 N -0.678 5.678 5 C 0.056 3.944 6 C -0.157 4.157 7 C -0.111 4.111 8 C 0.059 3.941 9 H 0.039 0.961 10 N -0.676 5.676 11 C 0.108 3.892 12 C -0.048 4.048 13 C -0.208 4.208 14 C -0.075 4.075 15 C -0.233 4.233 16 C 0.152 3.848 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.166 4.166 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.337 0.663 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.344 0.656 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 -8.476 -16.969 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 H 0.108 0.892 4 N -0.307 5.307 5 C -0.074 4.074 6 C -0.197 4.197 7 C -0.149 4.149 8 C -0.053 4.053 9 H 0.057 0.943 10 N -0.309 5.309 11 C -0.020 4.020 12 C -0.049 4.049 13 C -0.228 4.228 14 C -0.094 4.094 15 C -0.252 4.252 16 C 0.099 3.901 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.186 4.186 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.165 0.835 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.819 -7.553 -17.125 19.103 hybrid contribution -0.928 -0.696 1.373 1.797 sum -4.747 -8.249 -15.753 18.405 Atomic orbital electron populations 1.21880 0.94487 1.01921 1.02563 1.21718 0.95097 0.99095 0.87003 0.89162 1.60787 1.08886 1.22171 1.38828 1.22034 0.87290 1.01107 0.96940 1.22291 1.01461 0.99637 0.96309 1.21595 0.94600 1.01807 0.96897 1.22279 0.96059 0.96022 0.90944 0.94328 1.60490 1.34784 1.32607 1.03051 1.20823 1.00277 0.92476 0.88446 1.19149 0.92960 0.97919 0.94840 1.20409 0.94317 1.07364 1.00668 1.20682 0.98100 0.96267 0.94324 1.21179 0.93126 1.07507 1.03398 1.19355 0.89071 0.91819 0.89889 1.83980 1.31878 1.55175 1.37174 1.21313 0.93681 1.24024 1.07762 0.89140 1.25281 0.95173 0.97336 0.98729 1.70045 1.02276 1.39327 1.38147 0.85721 0.78739 0.79007 0.80016 1.19921 1.20257 1.19217 1.20011 0.99388 1.03894 0.95265 0.91655 0.91422 0.92935 0.84562 0.90693 0.90821 0.91231 0.92326 0.90854 0.91869 0.83504 0.90679 0.95047 0.88141 0.87583 0.85663 0.92063 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.24 37.16 0.34 -0.97 16 2 C 0.08 0.79 2.69 -67.72 -0.18 0.60 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 4 N -0.68 -5.92 6.50 -106.76 -0.69 -6.61 16 5 C 0.06 0.46 6.55 -3.83 -0.03 0.43 16 6 C -0.16 -1.34 6.08 -26.65 -0.16 -1.50 16 7 C -0.11 -1.21 5.49 -26.61 -0.15 -1.35 16 8 C 0.06 0.63 2.11 -67.63 -0.14 0.49 16 9 H 0.04 0.42 7.80 -51.93 -0.41 0.01 16 10 N -0.68 -8.87 6.30 -107.91 -0.68 -9.55 16 11 C 0.11 1.55 5.61 -4.98 -0.03 1.53 16 12 C -0.05 -0.86 5.39 -104.65 -0.56 -1.42 16 13 C -0.21 -3.58 9.70 -39.53 -0.38 -3.97 16 14 C -0.08 -1.40 10.04 -39.61 -0.40 -1.79 16 15 C -0.23 -5.12 9.17 -39.40 -0.36 -5.49 16 16 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 17 O -0.18 -5.17 9.76 0.06 0.00 -5.17 16 18 C -0.39 -11.07 9.49 30.89 0.29 -10.77 16 19 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 22 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 C -0.17 -3.58 9.65 -39.40 -0.38 -3.96 16 27 H 0.06 0.59 6.25 -51.93 -0.32 0.26 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.34 2.62 8.79 -39.29 -0.35 2.28 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.75 7.52 -51.93 -0.39 0.35 16 37 H 0.34 4.36 6.21 -39.29 -0.24 4.12 16 38 H 0.07 1.09 7.43 -51.93 -0.39 0.71 16 39 H 0.03 0.41 8.00 -51.93 -0.42 -0.01 16 40 H 0.10 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.13 2.76 5.64 -52.48 -0.30 2.47 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -30.15 350.91 -9.71 -39.86 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.87 Total: 9.03 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -2.49 Total: -23.72 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.62 Total: -40.96 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.17 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.15 -9.71 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332399603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.786 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds