Wall clock time and date at job start Tue Mar 31 2020 07:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.45523 * 2 1 4 4 N 1.46850 * 109.46091 * 240.02581 * 2 1 3 5 5 C 1.46846 * 111.19792 * 178.24069 * 4 2 1 6 6 C 1.53036 * 109.52378 * 61.74571 * 5 4 2 7 7 C 1.53118 * 109.27289 * 300.81778 * 6 5 4 8 8 C 1.53030 * 109.46482 * 119.97481 * 2 1 3 9 9 H 1.08998 * 109.53845 * 59.23440 * 8 2 1 10 10 N 1.46902 * 109.50290 * 299.13531 * 8 2 1 11 11 C 1.46897 * 111.00148 * 155.20085 * 10 8 2 12 12 C 1.50698 * 109.47093 * 179.97438 * 11 10 8 13 13 C 1.38329 * 119.96702 * 89.99773 * 12 11 10 14 14 C 1.38277 * 120.13923 * 179.97438 * 13 12 11 15 15 C 1.38116 * 120.06825 * 0.04200 * 14 13 12 16 16 C 1.38856 * 119.93244 * 359.97438 * 15 14 13 17 17 O 1.35751 * 120.06699 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00369 * 354.47733 * 17 16 15 19 19 H 1.07998 * 120.00313 * 5.06007 * 18 17 16 20 20 C 1.38655 * 120.00287 * 185.06530 * 18 17 16 21 21 N 1.31563 * 119.99678 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00297 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47342 * 89.99533 * 22 20 18 24 24 H 1.48495 * 109.46950 * 209.99897 * 22 20 18 25 25 H 1.48503 * 109.46719 * 329.99527 * 22 20 18 26 26 C 1.38078 * 119.96676 * 270.01734 * 12 11 10 27 27 H 1.09000 * 109.47045 * 300.02836 * 1 2 3 28 28 H 1.08997 * 109.47390 * 60.02652 * 1 2 3 29 29 H 1.08999 * 109.47252 * 180.02562 * 1 2 3 30 30 H 1.00899 * 110.99691 * 302.34014 * 4 2 1 31 31 H 1.08999 * 109.46114 * 301.72357 * 5 4 2 32 32 H 1.09003 * 109.44975 * 181.75702 * 5 4 2 33 33 H 1.09000 * 109.50128 * 180.88219 * 6 5 4 34 34 H 1.08993 * 109.50372 * 60.75720 * 6 5 4 35 35 H 1.09001 * 109.52509 * 297.74823 * 7 6 5 36 36 H 1.09001 * 109.57315 * 177.59356 * 7 6 5 37 37 H 1.00895 * 110.99832 * 31.24187 * 10 8 2 38 38 H 1.09001 * 109.47740 * 59.99787 * 11 10 8 39 39 H 1.09000 * 109.46710 * 299.99457 * 11 10 8 40 40 H 1.07999 * 119.93012 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.96133 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.03396 * 179.70234 * 15 14 13 43 43 H 0.96998 * 119.99411 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.03511 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 7 2.0192 -0.6918 -1.1994 5 6 3.4864 -0.6777 -1.2592 6 6 4.0548 -1.4189 -0.0469 7 6 3.5710 -0.7360 1.2354 8 6 2.0399 -0.7209 1.2499 9 1 1.6660 -1.7447 1.2583 10 7 1.5677 -0.0164 2.4493 11 6 1.5066 -0.9238 3.6029 12 6 1.0197 -0.1671 4.8119 13 6 -0.3345 -0.1002 5.0860 14 6 -0.7851 0.5926 6.1946 15 6 0.1163 1.2209 7.0314 16 6 1.4763 1.1559 6.7588 17 8 2.3647 1.7729 7.5792 18 6 1.8569 2.5266 8.5751 19 1 0.7903 2.5529 8.7426 20 6 2.7040 3.2682 9.3844 21 7 4.0034 3.2359 9.1808 22 14 2.0006 4.3120 10.7647 23 1 1.9258 3.5034 12.0079 24 1 2.8774 5.4887 10.9916 25 1 0.6393 4.7736 10.3917 26 6 1.9259 0.4590 5.6446 27 1 -0.3633 0.5143 0.8897 28 1 -0.3634 0.5134 -0.8902 29 1 -0.3634 -1.0276 0.0005 30 1 1.6646 -1.6354 -1.2425 31 1 3.8402 0.3532 -1.2533 32 1 3.8172 -1.1700 -2.1737 33 1 5.1439 -1.3947 -0.0834 34 1 3.7124 -2.4535 -0.0596 35 1 3.9457 0.2870 1.2670 36 1 3.9380 -1.2853 2.1024 37 1 0.6727 0.4191 2.2840 38 1 2.5000 -1.3258 3.8022 39 1 0.8203 -1.7422 3.3854 40 1 -1.0413 -0.5902 4.4327 41 1 -1.8430 0.6426 6.4061 42 1 -0.2365 1.7659 7.8945 43 1 4.5960 3.7544 9.7472 44 1 2.9830 0.4063 5.4302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332399603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:27 Heat of formation + Delta-G solvation = -31.015414 kcal Electronic energy + Delta-G solvation = -22760.878734 eV Core-core repulsion = 19484.096506 eV Total energy + Delta-G solvation = -3276.782228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.88446 -40.35039 -38.48301 -36.17307 -34.29409 -33.65451 -32.62694 -30.97271 -30.01728 -27.77923 -27.38342 -25.99281 -23.54101 -23.20483 -22.40461 -22.17034 -21.24377 -19.52916 -18.78043 -17.13274 -16.70934 -16.60906 -16.44301 -16.16221 -16.06270 -15.62322 -15.56513 -15.34382 -14.90736 -14.47333 -14.17884 -13.97017 -13.93246 -13.62873 -13.30260 -13.27920 -12.95695 -12.91281 -12.67370 -12.46594 -12.29832 -12.20320 -12.11717 -12.05519 -11.85219 -11.67889 -11.48003 -11.16495 -10.81015 -9.75635 -9.46555 -9.18554 -8.98353 -8.46940 -6.15667 0.52308 0.74426 1.34295 1.44016 1.52272 2.17559 2.77351 3.04508 3.25338 3.43899 3.48047 3.74125 3.82701 4.02397 4.04417 4.11388 4.21997 4.29861 4.31091 4.39170 4.41641 4.53362 4.58700 4.62044 4.69345 4.75568 4.84697 4.89473 5.01796 5.03526 5.08375 5.12788 5.16715 5.18559 5.30267 5.32529 5.34057 5.66732 5.73488 5.76539 5.91693 6.03014 6.15261 6.25321 6.48062 6.49635 6.97625 7.79590 8.76613 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.003061 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.169842 B = 9146.588029 C = 9803.422590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.087 3.913 3 H 0.071 0.929 4 N -0.678 5.678 5 C 0.057 3.943 6 C -0.149 4.149 7 C -0.113 4.113 8 C 0.065 3.935 9 H 0.050 0.950 10 N -0.690 5.690 11 C 0.115 3.885 12 C -0.038 4.038 13 C -0.183 4.183 14 C -0.070 4.070 15 C -0.245 4.245 16 C 0.112 3.888 17 O -0.235 6.235 18 C -0.414 4.414 19 H 0.102 0.898 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.252 1.252 26 C -0.184 4.184 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.346 0.654 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.348 0.652 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.862 -9.901 -18.760 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 H 0.089 0.911 4 N -0.307 5.307 5 C -0.072 4.072 6 C -0.189 4.189 7 C -0.152 4.152 8 C -0.046 4.046 9 H 0.068 0.932 10 N -0.324 5.324 11 C -0.014 4.014 12 C -0.038 4.038 13 C -0.202 4.202 14 C -0.088 4.088 15 C -0.264 4.264 16 C 0.062 3.938 17 O -0.142 6.142 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.204 4.204 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.165 0.835 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.170 0.830 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.898 -9.017 -18.966 22.104 hybrid contribution -0.102 -0.449 1.648 1.711 sum -7.000 -9.466 -17.318 20.941 Atomic orbital electron populations 1.21838 0.93337 1.02630 1.02567 1.21606 0.95934 0.98020 0.86800 0.91107 1.60776 1.09158 1.22786 1.37983 1.22049 0.87017 1.00691 0.97466 1.22233 1.01779 0.99835 0.95028 1.21607 0.95102 1.00652 0.97823 1.22285 0.95595 0.96384 0.90356 0.93250 1.60407 1.35296 1.33089 1.03648 1.20757 1.00541 0.92710 0.87379 1.19562 0.93027 0.96331 0.94929 1.20981 0.94491 1.04821 0.99867 1.21136 0.99506 0.94667 0.93490 1.21309 0.92632 1.08315 1.04177 1.19906 0.90165 0.92966 0.90777 1.83943 1.33924 1.57458 1.38892 1.21828 0.94483 1.24467 1.08189 0.88098 1.26619 0.95448 0.98557 1.01539 1.70199 1.04084 1.41487 1.40300 0.84576 0.78457 0.76934 0.76163 1.18729 1.19611 1.17592 1.20183 0.99627 1.04913 0.95669 0.91852 0.91223 0.91801 0.83523 0.91743 0.89009 0.90786 0.91279 0.92955 0.93215 0.82988 0.91408 0.92188 0.83429 0.83534 0.86439 0.91885 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.24 71.98 0.67 -1.45 16 2 C 0.09 1.52 2.69 44.93 0.12 1.64 16 3 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 4 N -0.68 -10.21 6.50 -491.69 -3.20 -13.40 16 5 C 0.06 0.83 6.55 86.33 0.57 1.39 16 6 C -0.15 -2.30 6.08 30.65 0.19 -2.12 16 7 C -0.11 -2.41 5.49 30.67 0.17 -2.25 16 8 C 0.07 1.28 2.11 44.97 0.09 1.37 16 9 H 0.05 0.90 7.80 -2.39 -0.02 0.88 16 10 N -0.69 -16.87 6.30 -495.32 -3.12 -19.99 16 11 C 0.11 3.02 5.61 85.56 0.48 3.50 16 12 C -0.04 -1.29 5.39 -19.88 -0.11 -1.40 16 13 C -0.18 -5.52 9.70 22.30 0.22 -5.30 16 14 C -0.07 -2.37 10.04 22.25 0.22 -2.14 16 15 C -0.24 -10.81 9.17 22.39 0.21 -10.61 16 16 C 0.11 5.75 6.65 22.58 0.15 5.90 16 17 O -0.24 -14.62 9.76 -22.71 -0.22 -14.84 16 18 C -0.41 -24.65 9.49 67.92 0.64 -24.00 16 19 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 20 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 21 N -0.92 -57.86 13.67 21.61 0.30 -57.57 16 22 Si 1.02 43.57 29.55 68.60 2.03 45.60 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 26 C -0.18 -8.22 9.65 22.39 0.22 -8.00 16 27 H 0.06 0.95 6.25 -2.39 -0.01 0.93 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.35 4.27 8.79 -89.69 -0.79 3.48 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.17 7.52 -2.39 -0.02 1.15 16 37 H 0.35 7.89 6.21 -89.70 -0.56 7.34 16 38 H 0.07 1.91 7.43 -2.39 -0.02 1.89 16 39 H 0.06 1.28 8.00 -2.39 -0.02 1.26 16 40 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 41 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.12 5.27 5.64 -2.91 -0.02 5.26 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -71.26 350.91 -0.26 -71.52 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.34 Total: 33.11 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 4.30 Total: -44.42 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -6.02 Total: -90.96 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.22 Total: -14.84 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -71.26 -0.26 -71.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332399603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.508 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds