Wall clock time and date at job start Tue Mar 31 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46647 * 2 1 4 4 N 1.46850 * 109.46284 * 240.02137 * 2 1 3 5 5 C 1.46846 * 111.19668 * 301.74148 * 4 2 1 6 6 C 1.53035 * 109.52259 * 298.25404 * 5 4 2 7 7 C 1.53120 * 109.27669 * 59.18277 * 6 5 4 8 8 C 1.53039 * 109.45230 * 119.97490 * 2 1 3 9 9 H 1.08995 * 109.50605 * 180.77058 * 8 2 1 10 10 N 1.46896 * 109.50186 * 300.89043 * 8 2 1 11 11 C 1.46905 * 110.99735 * 204.99710 * 10 8 2 12 12 C 1.50701 * 109.47110 * 179.97438 * 11 10 8 13 13 C 1.38322 * 119.96499 * 90.00023 * 12 11 10 14 14 C 1.38283 * 120.13761 * 180.02562 * 13 12 11 15 15 C 1.38116 * 120.06816 * 359.97438 * 14 13 12 16 16 C 1.38862 * 119.93470 * 0.02562 * 15 14 13 17 17 O 1.35748 * 120.06910 * 179.97438 * 16 15 14 18 18 C 1.34821 * 117.00498 * 354.46478 * 17 16 15 19 19 H 1.08001 * 120.00113 * 5.05472 * 18 17 16 20 20 C 1.38654 * 120.00452 * 185.05646 * 18 17 16 21 21 N 1.31561 * 119.99581 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00264 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47225 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47185 * 119.99808 * 22 20 18 25 25 H 1.48497 * 109.47157 * 240.00155 * 22 20 18 26 26 C 1.38082 * 119.96505 * 269.73174 * 12 11 10 27 27 H 1.08994 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46785 * 299.97974 * 1 2 3 29 29 H 1.09009 * 109.46790 * 59.97592 * 1 2 3 30 30 H 1.00897 * 110.99942 * 65.83846 * 4 2 1 31 31 H 1.09000 * 109.46412 * 58.27237 * 5 4 2 32 32 H 1.09004 * 109.46175 * 178.24434 * 5 4 2 33 33 H 1.09001 * 109.50738 * 299.23858 * 6 5 4 34 34 H 1.09007 * 109.50594 * 179.12203 * 6 5 4 35 35 H 1.09008 * 109.52011 * 182.43926 * 7 6 5 36 36 H 1.08997 * 109.57877 * 62.28366 * 7 6 5 37 37 H 1.00894 * 111.00145 * 81.05048 * 10 8 2 38 38 H 1.08995 * 109.47139 * 300.00150 * 11 10 8 39 39 H 1.09005 * 109.47040 * 60.00348 * 11 10 8 40 40 H 1.07999 * 119.93001 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.96431 * 179.97438 * 14 13 12 42 42 H 1.08001 * 120.03845 * 180.02562 * 15 14 13 43 43 H 0.97002 * 119.99672 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.03652 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0193 -0.6918 -1.1993 5 6 1.5171 -2.0705 -1.2591 6 6 2.0264 -2.8532 -0.0467 7 6 1.5437 -2.1696 1.2356 8 6 2.0396 -0.7210 1.2500 9 1 3.1295 -0.7095 1.2578 10 7 1.5326 -0.0409 2.4493 11 6 2.4110 -0.2818 3.6020 12 6 1.8604 0.4303 4.8106 13 6 0.9696 -0.2171 5.6477 14 6 0.4617 0.4331 6.7574 15 6 0.8432 1.7315 7.0335 16 6 1.7372 2.3842 6.1952 17 8 2.1136 3.6605 6.4637 18 6 1.4973 4.2770 7.4922 19 1 0.8014 3.7299 8.1110 20 6 1.7567 5.6134 7.7556 21 7 2.6047 6.2797 7.0021 22 14 0.9033 6.4672 9.1810 23 1 0.0058 5.5047 9.8689 24 1 1.9212 6.9664 10.1401 25 1 0.1049 7.6092 8.6676 26 6 2.2499 1.7264 5.0844 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5135 0.8902 29 1 -0.3633 0.5143 -0.8899 30 1 1.7762 -0.1819 -2.0354 31 1 0.4271 -2.0605 -1.2533 32 1 1.8710 -2.5466 -2.1735 33 1 3.1161 -2.8754 -0.0593 34 1 1.6407 -3.8722 -0.0831 35 1 1.9402 -2.6990 2.1020 36 1 0.4543 -2.1820 1.2683 37 1 0.5853 -0.3230 2.6516 38 1 2.4623 -1.3519 3.8023 39 1 3.4100 0.0951 3.3825 40 1 0.6695 -1.2323 5.4336 41 1 -0.2339 -0.0749 7.4088 42 1 0.4465 2.2387 7.9006 43 1 2.7865 7.2145 7.1865 44 1 2.9491 2.2298 4.4331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332399604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:33 Heat of formation + Delta-G solvation = -26.771827 kcal Electronic energy + Delta-G solvation = -22788.666784 eV Core-core repulsion = 19512.068572 eV Total energy + Delta-G solvation = -3276.598212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87944 -40.41324 -38.47907 -36.19596 -34.28186 -33.13501 -32.68345 -30.95858 -30.06086 -27.82361 -27.34451 -25.82831 -24.06998 -23.22204 -22.87506 -22.22914 -19.86608 -19.36935 -18.72914 -17.73873 -16.84892 -16.49784 -16.42580 -16.09501 -15.98197 -15.51126 -15.44894 -15.04644 -14.70733 -14.49927 -14.26258 -14.12297 -13.91712 -13.75517 -13.64243 -13.21810 -12.96184 -12.82710 -12.76654 -12.46655 -12.26630 -12.17637 -12.08268 -11.98024 -11.82575 -11.37424 -11.27582 -11.12237 -10.80588 -9.67302 -9.37425 -9.20307 -8.95799 -8.45998 -6.14480 0.54359 0.76097 1.34927 1.43681 1.53536 2.18118 2.77972 3.03052 3.26443 3.48217 3.62482 3.83575 3.88219 4.04941 4.08024 4.12717 4.25894 4.31859 4.34209 4.42757 4.55183 4.60743 4.63269 4.65150 4.71652 4.74655 4.78111 4.91049 5.00901 5.05100 5.11570 5.13078 5.14333 5.23167 5.31370 5.32753 5.48468 5.68473 5.75168 5.79048 6.01260 6.04617 6.20402 6.27550 6.49815 6.53790 6.98727 7.81086 8.77781 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.002970 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.826165 B = 9425.883262 C = 9966.039267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.096 3.904 3 H 0.068 0.932 4 N -0.692 5.692 5 C 0.052 3.948 6 C -0.111 4.111 7 C -0.147 4.147 8 C 0.100 3.900 9 H 0.070 0.930 10 N -0.686 5.686 11 C 0.115 3.885 12 C -0.036 4.036 13 C -0.183 4.183 14 C -0.071 4.071 15 C -0.245 4.245 16 C 0.112 3.888 17 O -0.235 6.235 18 C -0.412 4.412 19 H 0.101 0.899 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.269 1.269 26 C -0.183 4.183 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.350 0.650 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.346 0.654 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.272 0.728 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 -19.255 -12.688 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.014 4.014 3 H 0.087 0.913 4 N -0.323 5.323 5 C -0.077 4.077 6 C -0.150 4.150 7 C -0.186 4.186 8 C -0.010 4.010 9 H 0.089 0.911 10 N -0.317 5.317 11 C -0.014 4.014 12 C -0.037 4.037 13 C -0.202 4.202 14 C -0.089 4.089 15 C -0.265 4.265 16 C 0.062 3.938 17 O -0.142 6.142 18 C -0.488 4.488 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.194 1.194 26 C -0.203 4.203 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.169 0.831 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.314 -18.493 -12.697 22.844 hybrid contribution -1.165 0.347 0.655 1.381 sum -5.479 -18.146 -12.042 22.457 Atomic orbital electron populations 1.22449 0.97064 1.02144 1.02233 1.21341 0.93046 0.97224 0.89799 0.91348 1.60396 1.63552 1.03547 1.04843 1.22000 0.97636 0.88952 0.99085 1.21514 1.01221 0.98834 0.93417 1.22300 1.01251 0.96130 0.98895 1.21475 0.99118 0.91304 0.89087 0.91142 1.60389 1.05856 1.62347 1.03134 1.20741 0.96178 0.97556 0.86877 1.19568 0.96136 0.91998 0.96011 1.20971 1.01319 1.01153 0.96708 1.21125 0.98030 0.92607 0.97142 1.21299 1.04570 0.97854 1.02759 1.19911 0.93877 0.85554 0.94450 1.83942 1.58370 1.22550 1.49350 1.21855 1.25340 0.94584 1.07041 0.88144 1.26609 0.97673 0.95877 1.02040 1.70205 1.34957 1.10481 1.40411 0.84516 0.77833 0.78081 0.75674 1.17420 1.19315 1.19363 1.20207 1.06255 0.96374 0.97487 0.91602 0.92346 0.92646 0.83117 0.94373 0.89875 0.91960 0.90202 0.91716 0.91314 0.83473 0.92132 0.91164 0.83554 0.83676 0.86537 0.91896 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.30 71.98 0.60 -2.62 16 2 C 0.10 1.91 3.41 44.94 0.15 2.06 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 N -0.69 -11.52 6.65 -491.68 -3.27 -14.79 16 5 C 0.05 0.70 6.25 86.33 0.54 1.24 16 6 C -0.11 -1.53 6.09 30.65 0.19 -1.34 16 7 C -0.15 -2.31 4.95 30.67 0.15 -2.16 16 8 C 0.10 2.05 2.33 44.97 0.10 2.15 16 9 H 0.07 1.64 7.80 -2.39 -0.02 1.62 16 10 N -0.69 -16.60 5.73 -495.30 -2.84 -19.44 16 11 C 0.11 3.01 5.61 85.56 0.48 3.49 16 12 C -0.04 -1.24 5.39 -19.88 -0.11 -1.34 16 13 C -0.18 -5.53 9.70 22.30 0.22 -5.31 16 14 C -0.07 -2.41 10.04 22.25 0.22 -2.19 16 15 C -0.25 -10.85 9.17 22.39 0.21 -10.65 16 16 C 0.11 5.75 6.65 22.58 0.15 5.90 16 17 O -0.24 -14.60 9.76 -22.63 -0.22 -14.82 16 18 C -0.41 -24.55 9.49 67.92 0.64 -23.91 16 19 H 0.10 5.50 5.20 -2.91 -0.02 5.48 16 20 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 21 N -0.92 -57.83 13.67 21.61 0.30 -57.54 16 22 Si 1.02 43.64 29.55 68.60 2.03 45.67 16 23 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 C -0.18 -8.15 9.64 22.39 0.22 -7.93 16 27 H 0.07 1.04 4.80 -2.39 -0.01 1.02 16 28 H 0.06 1.22 7.19 -2.39 -0.02 1.20 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.35 4.93 8.90 -89.70 -0.80 4.13 16 31 H 0.04 0.49 6.19 -2.39 -0.01 0.48 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.06 1.00 7.54 -2.38 -0.02 0.99 16 36 H 0.07 1.03 6.51 -2.39 -0.02 1.02 16 37 H 0.35 7.83 7.68 -89.70 -0.69 7.14 16 38 H 0.06 1.29 7.45 -2.39 -0.02 1.27 16 39 H 0.07 1.96 8.00 -2.38 -0.02 1.94 16 40 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 41 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 42 H 0.12 5.25 5.64 -2.91 -0.02 5.24 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -70.81 345.28 -0.25 -71.05 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.47 Total: 33.44 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 4.23 Total: -43.58 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -5.81 Total: -91.77 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.22 Total: -14.82 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -70.81 -0.25 -71.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332399604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.283 kcal (2) G-P(sol) polarization free energy of solvation -70.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds