Wall clock time and date at job start Tue Mar 31 2020 08:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47103 * 2 1 4 4 C 1.52999 * 109.47378 * 120.00306 * 2 1 3 5 5 H 1.09003 * 109.47071 * 295.63783 * 4 2 1 6 6 C 1.50695 * 109.47320 * 55.63988 * 4 2 1 7 7 O 1.21287 * 120.00173 * 34.97312 * 6 4 2 8 8 N 1.34776 * 120.00456 * 214.97097 * 6 4 2 9 9 C 1.46503 * 119.99339 * 4.88516 * 8 6 4 10 10 C 1.46492 * 120.00323 * 184.88248 * 8 6 4 11 11 H 1.09000 * 109.47184 * 359.97438 * 10 8 6 12 12 C 1.52998 * 109.47417 * 120.00124 * 10 8 6 13 13 C 1.50702 * 109.47209 * 240.00030 * 10 8 6 14 14 H 1.08005 * 119.99686 * 359.97438 * 13 10 8 15 15 C 1.37874 * 120.00213 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99975 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 120.00196 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.46951 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47374 * 119.99606 * 17 15 13 20 20 H 1.48495 * 109.47065 * 239.99599 * 17 15 13 21 21 C 1.50701 * 109.47123 * 175.64069 * 4 2 1 22 22 C 1.38677 * 120.41908 * 119.99821 * 21 4 2 23 23 C 1.38629 * 118.42182 * 180.02562 * 22 21 4 24 24 C 1.38227 * 119.15681 * 359.97438 * 23 22 21 25 25 N 1.31848 * 120.76713 * 0.02562 * 24 23 22 26 26 C 1.31888 * 121.72896 * 359.70122 * 25 24 23 27 27 H 1.08997 * 109.47017 * 304.85685 * 1 2 3 28 28 H 1.09001 * 109.47507 * 64.85910 * 1 2 3 29 29 H 1.09006 * 109.47021 * 184.86193 * 1 2 3 30 30 H 1.09010 * 109.47155 * 240.00094 * 2 1 3 31 31 H 1.09000 * 109.47193 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46748 * 300.00395 * 3 2 1 33 33 H 1.08993 * 109.46837 * 60.00050 * 3 2 1 34 34 H 1.08994 * 109.47391 * 84.63581 * 9 8 6 35 35 H 1.08998 * 109.47163 * 324.62291 * 9 8 6 36 36 H 1.09007 * 109.46691 * 204.63247 * 9 8 6 37 37 H 1.09000 * 109.47075 * 59.99773 * 12 10 8 38 38 H 1.08999 * 109.47353 * 180.02562 * 12 10 8 39 39 H 1.08997 * 109.46958 * 300.00272 * 12 10 8 40 40 H 0.97007 * 119.99726 * 180.02562 * 16 15 13 41 41 H 1.08005 * 120.78619 * 359.97438 * 22 21 4 42 42 H 1.08001 * 120.41737 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.61183 * 179.97438 * 24 23 22 44 44 H 1.07994 * 119.62205 * 180.31602 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7419 -0.1644 2.1375 6 6 1.4515 -2.1075 1.3044 7 8 1.2600 -2.7263 0.2790 8 7 1.1379 -2.6597 2.4931 9 6 1.2684 -1.8741 3.7228 10 6 0.6666 -4.0453 2.5556 11 1 0.6344 -4.4639 1.5497 12 6 1.6209 -4.8702 3.4215 13 6 -0.7145 -4.0795 3.1577 14 1 -1.1931 -3.1608 3.4637 15 6 -1.3667 -5.2834 3.3190 16 7 -0.7838 -6.4021 2.9470 17 14 -3.0790 -5.3257 4.0647 18 1 -3.5086 -3.9434 4.3964 19 1 -4.0290 -5.9193 3.0898 20 1 -3.0602 -6.1479 5.3011 21 6 3.5431 -0.8155 1.1963 22 6 4.3183 -0.2377 2.1905 23 6 5.6972 -0.3489 2.1005 24 6 6.2496 -1.0277 1.0305 25 7 5.4814 -1.5647 0.1032 26 6 4.1662 -1.4832 0.1593 27 1 -0.3633 0.5873 0.8433 28 1 -0.3634 0.4366 -0.9303 29 1 -0.3633 -1.0240 0.0871 30 1 1.8933 -0.5139 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 0.3665 -1.2806 3.8722 35 1 2.1301 -1.2117 3.6410 36 1 1.4058 -2.5459 4.5702 37 1 1.6526 -4.4514 4.4274 38 1 1.2704 -5.9012 3.4676 39 1 2.6198 -4.8454 2.9861 40 1 -1.2428 -7.2491 3.0601 41 1 3.8586 0.2872 3.0149 42 1 6.3316 0.0885 2.8571 43 1 7.3230 -1.1184 0.9529 44 1 3.5695 -1.9401 -0.6162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340982100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:39 Heat of formation + Delta-G solvation = -11.380018 kcal Electronic energy + Delta-G solvation = -24277.065341 eV Core-core repulsion = 21001.134568 eV Total energy + Delta-G solvation = -3275.930773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.65674 -39.04628 -36.18113 -35.10072 -32.95003 -32.44568 -31.46391 -29.59668 -27.28561 -26.86836 -26.11290 -25.20479 -23.61129 -22.63614 -21.56787 -19.77629 -18.25326 -17.16139 -16.84343 -16.37748 -15.74468 -15.52215 -15.45303 -14.64834 -14.40380 -14.15939 -13.66025 -13.40127 -13.22831 -13.07838 -12.67948 -12.57840 -12.50909 -12.10064 -11.94798 -11.87511 -11.57336 -11.46390 -11.08184 -10.98379 -10.85694 -10.75542 -10.69762 -10.51726 -10.24610 -10.18361 -9.83770 -9.38455 -9.23686 -9.14371 -8.62679 -8.42347 -7.59817 -6.07668 -4.15587 1.11726 1.29059 3.25104 3.29455 3.33736 3.36570 3.78830 3.94578 4.38879 4.48495 4.72908 4.82019 4.88297 4.97285 5.03191 5.13328 5.15020 5.23676 5.47339 5.48093 5.59117 5.66876 5.72442 5.79180 5.85058 5.94253 6.00535 6.03104 6.08174 6.18953 6.24411 6.26511 6.47739 6.56441 6.72507 6.75339 6.81232 7.04554 7.41911 7.50958 7.70971 8.00132 8.02450 8.19174 8.51547 8.82920 9.03322 9.51074 10.97650 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.004957 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.294537 B = 5646.837970 C = 6308.116412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 C -0.144 4.144 4 C -0.065 4.065 5 H 0.095 0.905 6 C 0.516 3.484 7 O -0.545 6.545 8 N -0.590 5.590 9 C 0.085 3.915 10 C 0.258 3.742 11 H 0.063 0.937 12 C -0.147 4.147 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.113 4.113 22 C -0.071 4.071 23 C -0.175 4.175 24 C 0.089 3.911 25 N -0.483 5.483 26 C 0.116 3.884 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.029 0.971 38 H 0.094 0.906 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.152 0.848 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.486 15.087 0.071 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.093 4.093 3 C -0.201 4.201 4 C -0.087 4.087 5 H 0.113 0.887 6 C 0.302 3.698 7 O -0.424 6.424 8 N -0.320 5.320 9 C -0.059 4.059 10 C 0.158 3.842 11 H 0.081 0.919 12 C -0.205 4.205 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.115 4.115 22 C -0.097 4.097 23 C -0.194 4.194 24 C -0.068 4.068 25 N -0.191 5.191 26 C -0.041 4.041 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.112 0.888 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.170 0.830 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.731 14.084 -1.148 17.157 hybrid contribution -1.319 0.383 1.460 2.004 sum 8.412 14.467 0.311 16.737 Atomic orbital electron populations 1.21895 0.94368 1.03362 1.01252 1.20964 0.96421 0.95231 0.96667 1.21842 1.00775 0.95756 1.01728 1.20470 0.90892 0.96136 1.01220 0.88654 1.20044 0.78671 0.86953 0.84175 1.90646 1.54878 1.63479 1.33361 1.48222 1.63306 1.15543 1.04966 1.21583 0.99415 0.95894 0.88962 1.18946 0.92203 0.74748 0.98313 0.91878 1.22099 0.96032 1.04377 0.97999 1.21342 1.00203 0.93151 1.41489 0.92263 1.24895 0.98035 0.95464 0.95409 1.69891 1.37602 0.97908 1.47212 0.86454 0.84177 0.78045 0.78794 1.19832 1.20902 1.20972 1.20493 0.95274 0.99379 0.96397 1.21487 0.93710 0.97074 0.97452 1.22074 0.95527 1.01684 1.00148 1.22764 1.00073 0.93686 0.90244 1.67748 1.06141 1.17903 1.27309 1.22828 0.90302 0.94057 0.96907 0.93042 0.92624 0.91077 0.90004 0.92939 0.92473 0.92719 0.93343 0.93333 0.90542 0.95163 0.88765 0.97130 0.92750 0.84902 0.84918 0.83043 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.95 37.15 0.33 -1.82 16 2 C -0.07 -1.00 2.04 -90.62 -0.18 -1.19 16 3 C -0.14 -1.53 9.00 37.16 0.33 -1.19 16 4 C -0.06 -0.95 1.24 -92.93 -0.12 -1.07 16 5 H 0.10 1.23 6.04 -51.93 -0.31 0.91 16 6 C 0.52 10.25 5.17 -10.99 -0.06 10.19 16 7 O -0.55 -12.79 14.36 5.55 0.08 -12.71 16 8 N -0.59 -12.34 2.75 -175.27 -0.48 -12.83 16 9 C 0.09 1.41 9.01 59.85 0.54 1.95 16 10 C 0.26 6.55 2.62 -69.09 -0.18 6.37 16 11 H 0.06 1.87 6.91 -51.93 -0.36 1.51 16 12 C -0.15 -3.53 8.96 37.16 0.33 -3.20 16 13 C -0.52 -14.03 8.37 -34.44 -0.29 -14.32 16 14 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 17 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.11 -1.58 3.69 -104.48 -0.39 -1.96 16 22 C -0.07 -0.81 9.38 -39.27 -0.37 -1.18 16 23 C -0.17 -1.82 10.11 -39.44 -0.40 -2.22 16 24 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16 25 N -0.48 -7.30 10.36 -13.25 -0.14 -7.44 16 26 C 0.12 1.81 9.94 -17.55 -0.17 1.64 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.27 6.35 -51.93 -0.33 0.94 16 30 H 0.08 1.21 7.14 -51.92 -0.37 0.84 16 31 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.64 5.97 -51.93 -0.31 0.33 16 36 H 0.08 1.30 6.44 -51.93 -0.33 0.96 16 37 H 0.03 0.67 6.67 -51.93 -0.35 0.32 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 39 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.13 1.19 7.91 -52.48 -0.42 0.77 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.16 2.68 7.09 -52.49 -0.37 2.31 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -31.21 349.51 -7.34 -38.55 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.77 Total: 3.19 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.91 Total: -5.49 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.01 Total: -44.77 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.21 -7.34 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340982100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.170 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds