Wall clock time and date at job start Tue Mar 31 2020 08:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47103 * 2 1 4 4 C 1.52999 * 109.47378 * 120.00306 * 2 1 3 5 5 H 1.09003 * 109.47071 * 295.63783 * 4 2 1 6 6 C 1.50695 * 109.47320 * 55.63988 * 4 2 1 7 7 O 1.21287 * 120.00173 * 34.97312 * 6 4 2 8 8 N 1.34776 * 120.00456 * 214.97097 * 6 4 2 9 9 C 1.46503 * 119.99339 * 4.88516 * 8 6 4 10 10 C 1.46492 * 120.00323 * 184.88248 * 8 6 4 11 11 H 1.09000 * 109.47184 * 359.97438 * 10 8 6 12 12 C 1.52998 * 109.47417 * 120.00124 * 10 8 6 13 13 C 1.50702 * 109.47209 * 240.00030 * 10 8 6 14 14 H 1.08005 * 119.99686 * 359.97438 * 13 10 8 15 15 C 1.37874 * 120.00213 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99975 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 120.00196 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.46951 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47374 * 119.99606 * 17 15 13 20 20 H 1.48495 * 109.47065 * 239.99599 * 17 15 13 21 21 C 1.50701 * 109.47123 * 175.64069 * 4 2 1 22 22 C 1.38677 * 120.41908 * 119.99821 * 21 4 2 23 23 C 1.38629 * 118.42182 * 180.02562 * 22 21 4 24 24 C 1.38227 * 119.15681 * 359.97438 * 23 22 21 25 25 N 1.31848 * 120.76713 * 0.02562 * 24 23 22 26 26 C 1.31888 * 121.72896 * 359.70122 * 25 24 23 27 27 H 1.08997 * 109.47017 * 304.85685 * 1 2 3 28 28 H 1.09001 * 109.47507 * 64.85910 * 1 2 3 29 29 H 1.09006 * 109.47021 * 184.86193 * 1 2 3 30 30 H 1.09010 * 109.47155 * 240.00094 * 2 1 3 31 31 H 1.09000 * 109.47193 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46748 * 300.00395 * 3 2 1 33 33 H 1.08993 * 109.46837 * 60.00050 * 3 2 1 34 34 H 1.08994 * 109.47391 * 84.63581 * 9 8 6 35 35 H 1.08998 * 109.47163 * 324.62291 * 9 8 6 36 36 H 1.09007 * 109.46691 * 204.63247 * 9 8 6 37 37 H 1.09000 * 109.47075 * 59.99773 * 12 10 8 38 38 H 1.08999 * 109.47353 * 180.02562 * 12 10 8 39 39 H 1.08997 * 109.46958 * 300.00272 * 12 10 8 40 40 H 0.97007 * 119.99726 * 180.02562 * 16 15 13 41 41 H 1.08005 * 120.78619 * 359.97438 * 22 21 4 42 42 H 1.08001 * 120.41737 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.61183 * 179.97438 * 24 23 22 44 44 H 1.07994 * 119.62205 * 180.31602 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7419 -0.1644 2.1375 6 6 1.4515 -2.1075 1.3044 7 8 1.2600 -2.7263 0.2790 8 7 1.1379 -2.6597 2.4931 9 6 1.2684 -1.8741 3.7228 10 6 0.6666 -4.0453 2.5556 11 1 0.6344 -4.4639 1.5497 12 6 1.6209 -4.8702 3.4215 13 6 -0.7145 -4.0795 3.1577 14 1 -1.1931 -3.1608 3.4637 15 6 -1.3667 -5.2834 3.3190 16 7 -0.7838 -6.4021 2.9470 17 14 -3.0790 -5.3257 4.0647 18 1 -3.5086 -3.9434 4.3964 19 1 -4.0290 -5.9193 3.0898 20 1 -3.0602 -6.1479 5.3011 21 6 3.5431 -0.8155 1.1963 22 6 4.3183 -0.2377 2.1905 23 6 5.6972 -0.3489 2.1005 24 6 6.2496 -1.0277 1.0305 25 7 5.4814 -1.5647 0.1032 26 6 4.1662 -1.4832 0.1593 27 1 -0.3633 0.5873 0.8433 28 1 -0.3634 0.4366 -0.9303 29 1 -0.3633 -1.0240 0.0871 30 1 1.8933 -0.5139 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 0.3665 -1.2806 3.8722 35 1 2.1301 -1.2117 3.6410 36 1 1.4058 -2.5459 4.5702 37 1 1.6526 -4.4514 4.4274 38 1 1.2704 -5.9012 3.4676 39 1 2.6198 -4.8454 2.9861 40 1 -1.2428 -7.2491 3.0601 41 1 3.8586 0.2872 3.0149 42 1 6.3316 0.0885 2.8571 43 1 7.3230 -1.1184 0.9529 44 1 3.5695 -1.9401 -0.6162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340982100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:38 Heat of formation + Delta-G solvation = -30.321913 kcal Electronic energy + Delta-G solvation = -24277.886723 eV Core-core repulsion = 21001.134568 eV Total energy + Delta-G solvation = -3276.752155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83308 -40.38592 -37.60707 -36.65969 -34.80884 -33.52069 -32.47327 -31.42962 -28.42739 -27.92805 -27.59173 -27.26807 -24.59492 -23.86532 -23.00202 -21.15965 -19.71742 -18.56938 -18.13239 -18.00809 -17.22877 -16.87617 -16.65455 -16.28210 -15.81670 -15.21700 -14.97779 -14.77350 -14.44213 -14.40498 -14.01532 -13.87902 -13.61723 -13.49367 -13.30576 -13.14342 -13.00198 -12.91881 -12.76926 -12.65953 -12.59520 -12.21627 -12.12202 -12.06111 -11.82078 -11.60034 -11.17827 -10.90180 -10.58953 -10.45439 -10.36663 -9.82267 -9.30786 -8.14943 -6.31622 0.13652 0.36201 1.39760 1.41621 1.52843 1.80759 2.30269 2.48747 2.86440 3.13038 3.47534 3.64344 3.72214 3.82289 3.98786 4.08511 4.11673 4.23260 4.38039 4.44728 4.51478 4.66664 4.67675 4.70580 4.76019 4.80422 4.83523 4.87013 4.98686 5.00417 5.02848 5.05740 5.19996 5.22728 5.29348 5.39238 5.44137 5.47314 5.61271 5.67911 5.80138 6.02405 6.15804 6.77030 6.84886 7.04179 7.32839 7.50010 8.89589 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.004957 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.294537 B = 5646.837970 C = 6308.116412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.132 4.132 4 C -0.048 4.048 5 H 0.125 0.875 6 C 0.507 3.493 7 O -0.595 6.595 8 N -0.600 5.600 9 C 0.080 3.920 10 C 0.263 3.737 11 H 0.005 0.995 12 C -0.131 4.131 13 C -0.533 4.533 14 H 0.062 0.938 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.123 4.123 22 C -0.066 4.066 23 C -0.159 4.159 24 C 0.080 3.920 25 N -0.516 5.516 26 C 0.089 3.911 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.013 0.987 40 H 0.264 0.736 41 H 0.171 0.829 42 H 0.177 0.823 43 H 0.181 0.819 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.396 18.536 2.883 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.189 4.189 4 C -0.070 4.070 5 H 0.143 0.857 6 C 0.296 3.704 7 O -0.477 6.477 8 N -0.330 5.330 9 C -0.062 4.062 10 C 0.161 3.839 11 H 0.023 0.977 12 C -0.189 4.189 13 C -0.571 4.571 14 H 0.080 0.920 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.126 4.126 22 C -0.092 4.092 23 C -0.178 4.178 24 C -0.077 4.077 25 N -0.225 5.225 26 C -0.067 4.067 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.188 0.812 42 H 0.194 0.806 43 H 0.198 0.802 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.650 17.569 1.682 20.613 hybrid contribution -1.500 -0.703 0.527 1.739 sum 9.149 16.866 2.209 19.315 Atomic orbital electron populations 1.21855 0.94992 1.00784 1.02881 1.20965 0.95827 0.97172 0.95308 1.21749 1.00758 0.93148 1.03292 1.20397 0.91354 0.92390 1.02850 0.85694 1.21039 0.77604 0.88756 0.82989 1.90617 1.56598 1.65327 1.35173 1.48224 1.63306 1.14364 1.07113 1.21857 1.01852 0.95944 0.86578 1.18485 0.92670 0.77679 0.95083 0.97738 1.21870 0.95576 1.02660 0.98816 1.21590 1.00981 0.93290 1.41288 0.92028 1.25756 1.01903 0.95104 0.95839 1.70042 1.39207 0.98463 1.48197 0.85407 0.79167 0.78492 0.77948 1.18693 1.21312 1.19981 1.20399 0.94632 1.00474 0.97064 1.21923 0.94096 0.96054 0.97084 1.22534 0.95612 0.99772 0.99873 1.23385 1.01238 0.93015 0.90021 1.67671 1.06077 1.19415 1.29312 1.22490 0.90780 0.95883 0.97562 0.90993 0.91317 0.95711 0.92645 0.92808 0.91543 0.90525 0.92125 0.89191 0.90992 0.93142 0.91474 0.96838 0.92724 0.81150 0.80603 0.80229 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 8.95 71.98 0.64 -3.55 16 2 C -0.07 -1.98 2.04 -10.79 -0.02 -2.00 16 3 C -0.13 -2.45 9.00 71.98 0.65 -1.80 16 4 C -0.05 -1.36 1.24 -12.29 -0.02 -1.37 16 5 H 0.13 2.72 6.04 -2.39 -0.01 2.71 16 6 C 0.51 20.86 5.17 87.66 0.45 21.31 16 7 O -0.60 -30.43 14.36 -3.05 -0.04 -30.48 16 8 N -0.60 -25.36 2.75 -826.81 -2.28 -27.64 16 9 C 0.08 2.43 9.01 127.77 1.15 3.59 16 10 C 0.26 13.92 2.62 44.25 0.12 14.03 16 11 H 0.00 0.30 6.91 -2.39 -0.02 0.28 16 12 C -0.13 -6.46 8.96 71.98 0.64 -5.81 16 13 C -0.53 -29.16 8.37 25.60 0.21 -28.95 16 14 H 0.06 3.26 7.65 -2.91 -0.02 3.24 16 15 C 0.01 0.73 5.30 84.65 0.45 1.18 16 16 N -0.92 -53.90 11.32 21.45 0.24 -53.65 16 17 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 C -0.12 -3.26 3.69 -19.77 -0.07 -3.33 16 22 C -0.07 -1.21 9.38 22.47 0.21 -1.00 16 23 C -0.16 -2.55 10.11 22.36 0.23 -2.33 16 24 C 0.08 1.71 11.18 84.69 0.95 2.66 16 25 N -0.52 -15.63 10.36 -195.85 -2.03 -17.66 16 26 C 0.09 2.88 9.94 84.67 0.84 3.72 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.02 0.91 6.35 -2.38 -0.02 0.90 16 30 H 0.06 1.77 7.14 -2.38 -0.02 1.75 16 31 H 0.05 1.00 7.36 -2.39 -0.02 0.98 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.96 5.97 -2.39 -0.01 1.95 16 36 H 0.07 2.26 6.44 -2.38 -0.02 2.25 16 37 H 0.05 2.23 6.67 -2.39 -0.02 2.21 16 38 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 41 H 0.17 1.84 7.91 -2.91 -0.02 1.82 16 42 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 43 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.13 4.77 7.09 -2.91 -0.02 4.75 16 Total: -1.00 -74.93 349.51 5.34 -69.60 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.98 Total: 18.13 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 6.44 Total: -3.65 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.06 Total: -98.95 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.04 Total: -30.48 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -74.93 5.34 -69.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340982100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.274 kcal (2) G-P(sol) polarization free energy of solvation -74.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds