Wall clock time and date at job start Tue Mar 31 2020 08:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47011 * 2 1 4 4 C 1.53001 * 109.46803 * 119.99945 * 2 1 3 5 5 H 1.08998 * 109.47070 * 295.49926 * 4 2 1 6 6 C 1.50700 * 109.47345 * 55.50476 * 4 2 1 7 7 O 1.21274 * 119.99805 * 34.74755 * 6 4 2 8 8 N 1.34774 * 119.99920 * 214.74711 * 6 4 2 9 9 C 1.46503 * 120.00019 * 354.92852 * 8 6 4 10 10 C 1.46494 * 120.00194 * 174.92627 * 8 6 4 11 11 H 1.09000 * 109.46837 * 359.97438 * 10 8 6 12 12 C 1.53005 * 109.47265 * 240.00335 * 10 8 6 13 13 C 1.50700 * 109.47512 * 119.99856 * 10 8 6 14 14 H 1.07994 * 119.99602 * 0.02562 * 13 10 8 15 15 C 1.37874 * 119.99888 * 179.97438 * 13 10 8 16 16 N 1.31509 * 120.00584 * 0.02562 * 15 13 10 17 17 Si 1.86810 * 119.99746 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47086 * 89.99968 * 17 15 13 19 19 H 1.48496 * 109.46897 * 210.00526 * 17 15 13 20 20 H 1.48501 * 109.46621 * 330.00142 * 17 15 13 21 21 C 1.50704 * 109.46672 * 175.50660 * 4 2 1 22 22 C 1.38665 * 120.41995 * 119.99961 * 21 4 2 23 23 C 1.38638 * 118.42233 * 179.97438 * 22 21 4 24 24 C 1.38221 * 119.15639 * 0.02562 * 23 22 21 25 25 N 1.31857 * 120.77033 * 359.97438 * 24 23 22 26 26 C 1.31889 * 121.71989 * 359.71085 * 25 24 23 27 27 H 1.09000 * 109.47297 * 304.88806 * 1 2 3 28 28 H 1.08999 * 109.47370 * 64.89352 * 1 2 3 29 29 H 1.09002 * 109.47010 * 184.88889 * 1 2 3 30 30 H 1.09006 * 109.46989 * 239.99575 * 2 1 3 31 31 H 1.09001 * 109.47218 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47066 * 299.99818 * 3 2 1 33 33 H 1.08994 * 109.47233 * 59.99841 * 3 2 1 34 34 H 1.09007 * 109.46549 * 275.55682 * 9 8 6 35 35 H 1.08998 * 109.47240 * 35.55150 * 9 8 6 36 36 H 1.08994 * 109.47490 * 155.55805 * 9 8 6 37 37 H 1.08999 * 109.47006 * 179.97438 * 12 10 8 38 38 H 1.09002 * 109.46865 * 59.99276 * 12 10 8 39 39 H 1.09003 * 109.46549 * 299.99983 * 12 10 8 40 40 H 0.96996 * 120.00279 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.79212 * 359.97379 * 22 21 4 42 42 H 1.07995 * 120.41910 * 180.02562 * 23 22 21 43 43 H 1.08005 * 119.61930 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.61388 * 180.31064 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7440 -0.1630 2.1374 6 6 1.4488 -2.1063 1.3063 7 8 1.2513 -2.7239 0.2814 8 7 1.1395 -2.6585 2.4961 9 6 1.4796 -1.9602 3.7383 10 6 0.4633 -3.9571 2.5474 11 1 0.2936 -4.3185 1.5332 12 6 -0.8792 -3.8050 3.2654 13 6 1.3240 -4.9426 3.2950 14 1 2.2790 -4.6325 3.6926 15 6 0.8917 -6.2397 3.4723 16 7 -0.2715 -6.6172 2.9886 17 14 1.9584 -7.4612 4.3997 18 1 1.6219 -7.4145 5.8453 19 1 1.7120 -8.8295 3.8779 20 1 3.3892 -7.1104 4.2129 21 6 3.5429 -0.8184 1.1948 22 6 4.3202 -0.2413 2.1877 23 6 5.6988 -0.3562 2.0968 24 6 6.2487 -1.0369 1.0268 25 7 5.4785 -1.5732 0.1007 26 6 4.1635 -1.4888 0.1581 27 1 -0.3634 0.5878 0.8429 28 1 -0.3634 0.4360 -0.9305 29 1 -0.3633 -1.0239 0.0876 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 2.5111 -2.1845 4.0104 35 1 1.3675 -0.8858 3.5935 36 1 0.8136 -2.2910 4.5352 37 1 -1.3825 -4.7711 3.3031 38 1 -1.5017 -3.0921 2.7246 39 1 -0.7098 -3.4432 4.2796 40 1 -0.5754 -7.5299 3.1131 41 1 3.8625 0.2851 3.0122 42 1 6.3349 0.0805 2.8523 43 1 7.3218 -1.1305 0.9483 44 1 3.5651 -1.9451 -0.6165 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340982107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:55 Heat of formation + Delta-G solvation = -9.677740 kcal Electronic energy + Delta-G solvation = -24318.819170 eV Core-core repulsion = 21042.962213 eV Total energy + Delta-G solvation = -3275.856957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.61842 -39.03152 -36.18408 -35.09981 -32.94180 -32.40987 -31.43093 -29.58568 -27.29868 -26.88152 -26.11626 -25.20173 -23.56000 -22.60790 -21.56903 -19.78324 -18.25400 -17.10354 -16.88409 -16.30955 -15.80385 -15.55034 -15.37751 -14.53116 -14.47083 -14.16150 -13.73357 -13.47109 -13.07079 -13.01475 -12.67435 -12.58272 -12.42399 -12.16947 -12.03529 -11.91118 -11.55416 -11.41654 -11.10216 -11.00127 -10.83618 -10.78882 -10.67944 -10.51661 -10.26680 -10.17174 -9.78547 -9.33172 -9.22988 -9.11585 -8.60305 -8.41561 -7.60108 -6.07231 -4.14816 1.17316 1.34908 3.26019 3.30704 3.33943 3.38023 3.82703 3.96060 4.39562 4.52802 4.74782 4.85735 4.91633 4.97103 5.06404 5.11866 5.16723 5.24292 5.40510 5.47487 5.62357 5.66024 5.75352 5.76144 5.89073 5.91967 6.00608 6.02199 6.12845 6.17083 6.25499 6.29009 6.46883 6.48769 6.73508 6.77982 6.80632 7.03568 7.41496 7.50687 7.71272 8.00504 8.08102 8.19592 8.51483 8.83322 9.03643 9.51751 10.98041 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015463 B = 0.005714 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.340272 B = 4899.343266 C = 5965.378701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.066 4.066 5 H 0.096 0.904 6 C 0.515 3.485 7 O -0.545 6.545 8 N -0.589 5.589 9 C 0.085 3.915 10 C 0.258 3.742 11 H 0.064 0.936 12 C -0.147 4.147 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.113 4.113 22 C -0.070 4.070 23 C -0.175 4.175 24 C 0.090 3.910 25 N -0.483 5.483 26 C 0.118 3.882 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.011 0.989 39 H 0.030 0.970 40 H 0.263 0.737 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.152 0.848 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 16.549 -0.177 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.201 4.201 4 C -0.088 4.088 5 H 0.114 0.886 6 C 0.301 3.699 7 O -0.424 6.424 8 N -0.320 5.320 9 C -0.058 4.058 10 C 0.158 3.842 11 H 0.081 0.919 12 C -0.205 4.205 13 C -0.562 4.562 14 H 0.075 0.925 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.116 4.116 22 C -0.096 4.096 23 C -0.195 4.195 24 C -0.067 4.067 25 N -0.191 5.191 26 C -0.039 4.039 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.030 0.970 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.169 0.831 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.194 15.577 -1.406 16.822 hybrid contribution 0.239 -0.282 1.574 1.617 sum 6.432 15.295 0.168 16.593 Atomic orbital electron populations 1.21890 0.94532 1.03080 1.01278 1.20964 0.96280 0.95289 0.96809 1.21838 1.00885 0.95692 1.01681 1.20492 0.91081 0.96097 1.01100 0.88578 1.20041 0.78775 0.86871 0.84201 1.90643 1.54816 1.63327 1.33611 1.48229 1.57293 1.22183 1.04280 1.21603 1.00795 0.94974 0.88477 1.18945 0.89082 0.77389 0.98781 0.91868 1.22109 0.98432 1.02148 0.97859 1.21298 1.04145 0.94964 1.35788 0.92455 1.24877 0.95175 0.98040 0.95634 1.69866 1.19215 1.18276 1.45286 0.86518 0.80760 0.80527 0.79754 1.20617 1.21047 1.19987 1.20458 0.95186 0.99462 0.96454 1.21467 0.93686 0.97080 0.97391 1.22062 0.95558 1.01744 1.00108 1.22758 1.00050 0.93637 0.90276 1.67749 1.06091 1.17842 1.27422 1.22812 0.90339 0.93878 0.96905 0.93077 0.92573 0.91331 0.89959 0.92866 0.92475 0.92750 0.93558 0.93108 0.90516 0.88764 0.96984 0.95138 0.92697 0.84955 0.84956 0.83086 0.82267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.95 37.16 0.33 -1.68 16 2 C -0.07 -0.99 2.04 -90.62 -0.18 -1.17 16 3 C -0.14 -1.50 9.00 37.16 0.33 -1.16 16 4 C -0.07 -0.96 1.45 -92.92 -0.14 -1.10 16 5 H 0.10 1.21 5.61 -51.93 -0.29 0.92 16 6 C 0.52 10.23 5.18 -10.99 -0.06 10.18 16 7 O -0.55 -12.81 14.35 5.56 0.08 -12.73 16 8 N -0.59 -12.33 2.75 -175.26 -0.48 -12.81 16 9 C 0.09 1.41 9.43 59.85 0.56 1.98 16 10 C 0.26 6.54 2.62 -69.08 -0.18 6.36 16 11 H 0.06 1.86 6.91 -51.93 -0.36 1.50 16 12 C -0.15 -3.46 8.96 37.16 0.33 -3.13 16 13 C -0.52 -14.25 8.37 -34.44 -0.29 -14.54 16 14 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 15 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -25.19 11.32 55.43 0.63 -24.57 16 17 Si 0.90 21.35 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.11 -1.64 3.73 -104.48 -0.39 -2.03 16 22 C -0.07 -0.84 9.81 -39.28 -0.39 -1.22 16 23 C -0.17 -1.94 10.11 -39.44 -0.40 -2.34 16 24 C 0.09 1.14 11.18 -17.55 -0.20 0.94 16 25 N -0.48 -7.70 10.36 -13.25 -0.14 -7.83 16 26 C 0.12 1.92 9.94 -17.55 -0.17 1.75 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.14 6.33 -51.93 -0.33 0.81 16 30 H 0.08 1.21 7.14 -51.93 -0.37 0.84 16 31 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.65 5.89 -51.93 -0.31 0.34 16 36 H 0.08 1.29 6.44 -51.93 -0.33 0.95 16 37 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.03 0.66 6.67 -51.93 -0.35 0.31 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.13 1.23 8.00 -52.49 -0.42 0.81 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.16 2.78 7.10 -52.49 -0.37 2.40 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -31.54 350.17 -7.32 -38.86 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.74 Total: 2.96 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -0.92 Total: -5.48 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.01 Total: -45.21 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.54 -7.32 -38.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340982107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.183 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds