Wall clock time and date at job start Tue Mar 31 2020 08:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47011 * 2 1 4 4 C 1.53001 * 109.46803 * 119.99945 * 2 1 3 5 5 H 1.08998 * 109.47070 * 295.49926 * 4 2 1 6 6 C 1.50700 * 109.47345 * 55.50476 * 4 2 1 7 7 O 1.21274 * 119.99805 * 34.74755 * 6 4 2 8 8 N 1.34774 * 119.99920 * 214.74711 * 6 4 2 9 9 C 1.46503 * 120.00019 * 354.92852 * 8 6 4 10 10 C 1.46494 * 120.00194 * 174.92627 * 8 6 4 11 11 H 1.09000 * 109.46837 * 359.97438 * 10 8 6 12 12 C 1.53005 * 109.47265 * 240.00335 * 10 8 6 13 13 C 1.50700 * 109.47512 * 119.99856 * 10 8 6 14 14 H 1.07994 * 119.99602 * 0.02562 * 13 10 8 15 15 C 1.37874 * 119.99888 * 179.97438 * 13 10 8 16 16 N 1.31509 * 120.00584 * 0.02562 * 15 13 10 17 17 Si 1.86810 * 119.99746 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47086 * 89.99968 * 17 15 13 19 19 H 1.48496 * 109.46897 * 210.00526 * 17 15 13 20 20 H 1.48501 * 109.46621 * 330.00142 * 17 15 13 21 21 C 1.50704 * 109.46672 * 175.50660 * 4 2 1 22 22 C 1.38665 * 120.41995 * 119.99961 * 21 4 2 23 23 C 1.38638 * 118.42233 * 179.97438 * 22 21 4 24 24 C 1.38221 * 119.15639 * 0.02562 * 23 22 21 25 25 N 1.31857 * 120.77033 * 359.97438 * 24 23 22 26 26 C 1.31889 * 121.71989 * 359.71085 * 25 24 23 27 27 H 1.09000 * 109.47297 * 304.88806 * 1 2 3 28 28 H 1.08999 * 109.47370 * 64.89352 * 1 2 3 29 29 H 1.09002 * 109.47010 * 184.88889 * 1 2 3 30 30 H 1.09006 * 109.46989 * 239.99575 * 2 1 3 31 31 H 1.09001 * 109.47218 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47066 * 299.99818 * 3 2 1 33 33 H 1.08994 * 109.47233 * 59.99841 * 3 2 1 34 34 H 1.09007 * 109.46549 * 275.55682 * 9 8 6 35 35 H 1.08998 * 109.47240 * 35.55150 * 9 8 6 36 36 H 1.08994 * 109.47490 * 155.55805 * 9 8 6 37 37 H 1.08999 * 109.47006 * 179.97438 * 12 10 8 38 38 H 1.09002 * 109.46865 * 59.99276 * 12 10 8 39 39 H 1.09003 * 109.46549 * 299.99983 * 12 10 8 40 40 H 0.96996 * 120.00279 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.79212 * 359.97379 * 22 21 4 42 42 H 1.07995 * 120.41910 * 180.02562 * 23 22 21 43 43 H 1.08005 * 119.61930 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.61388 * 180.31064 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7440 -0.1630 2.1374 6 6 1.4488 -2.1063 1.3063 7 8 1.2513 -2.7239 0.2814 8 7 1.1395 -2.6585 2.4961 9 6 1.4796 -1.9602 3.7383 10 6 0.4633 -3.9571 2.5474 11 1 0.2936 -4.3185 1.5332 12 6 -0.8792 -3.8050 3.2654 13 6 1.3240 -4.9426 3.2950 14 1 2.2790 -4.6325 3.6926 15 6 0.8917 -6.2397 3.4723 16 7 -0.2715 -6.6172 2.9886 17 14 1.9584 -7.4612 4.3997 18 1 1.6219 -7.4145 5.8453 19 1 1.7120 -8.8295 3.8779 20 1 3.3892 -7.1104 4.2129 21 6 3.5429 -0.8184 1.1948 22 6 4.3202 -0.2413 2.1877 23 6 5.6988 -0.3562 2.0968 24 6 6.2487 -1.0369 1.0268 25 7 5.4785 -1.5732 0.1007 26 6 4.1635 -1.4888 0.1581 27 1 -0.3634 0.5878 0.8429 28 1 -0.3634 0.4360 -0.9305 29 1 -0.3633 -1.0239 0.0876 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 2.5111 -2.1845 4.0104 35 1 1.3675 -0.8858 3.5935 36 1 0.8136 -2.2910 4.5352 37 1 -1.3825 -4.7711 3.3031 38 1 -1.5017 -3.0921 2.7246 39 1 -0.7098 -3.4432 4.2796 40 1 -0.5754 -7.5299 3.1131 41 1 3.8625 0.2851 3.0122 42 1 6.3349 0.0805 2.8523 43 1 7.3218 -1.1305 0.9483 44 1 3.5651 -1.9451 -0.6165 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340982107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:54 Heat of formation + Delta-G solvation = -28.898570 kcal Electronic energy + Delta-G solvation = -24319.652647 eV Core-core repulsion = 21042.962213 eV Total energy + Delta-G solvation = -3276.690435 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.82276 -40.38624 -37.60022 -36.65417 -34.81837 -33.51353 -32.47746 -31.40738 -28.43015 -27.91323 -27.58562 -27.26994 -24.59146 -23.86919 -22.98720 -21.15439 -19.72200 -18.59653 -18.10420 -18.01970 -17.23757 -16.91815 -16.65355 -16.26765 -15.77455 -15.23034 -15.09854 -14.65606 -14.52457 -14.39465 -13.96529 -13.82803 -13.59311 -13.48262 -13.40102 -13.12786 -12.97887 -12.94835 -12.72778 -12.66279 -12.57524 -12.20023 -12.16976 -12.06713 -11.80894 -11.58264 -11.19010 -10.87583 -10.59065 -10.45310 -10.36193 -9.81739 -9.31030 -8.16505 -6.32788 0.14282 0.37046 1.36744 1.39266 1.48466 1.81738 2.29731 2.47378 2.86644 3.10956 3.48030 3.66286 3.71970 3.82326 3.95004 4.08730 4.11627 4.23509 4.36262 4.43752 4.53363 4.67332 4.70422 4.74760 4.77225 4.81520 4.86859 4.89097 4.99763 5.02378 5.03355 5.07072 5.19835 5.23768 5.29700 5.40087 5.44619 5.48073 5.63668 5.66976 5.80648 6.03892 6.16022 6.75184 6.85350 7.04369 7.31817 7.50085 8.87392 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015463 B = 0.005714 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.340272 B = 4899.343266 C = 5965.378701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.048 4.048 5 H 0.129 0.871 6 C 0.507 3.493 7 O -0.596 6.596 8 N -0.599 5.599 9 C 0.081 3.919 10 C 0.263 3.737 11 H 0.006 0.994 12 C -0.131 4.131 13 C -0.536 4.536 14 H 0.054 0.946 15 C 0.016 3.984 16 N -0.916 5.916 17 Si 0.961 3.039 18 H -0.263 1.263 19 H -0.285 1.285 20 H -0.276 1.276 21 C -0.122 4.122 22 C -0.065 4.065 23 C -0.160 4.160 24 C 0.079 3.921 25 N -0.517 5.517 26 C 0.088 3.912 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.172 0.828 42 H 0.176 0.824 43 H 0.179 0.821 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.764 19.538 2.727 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.190 4.190 4 C -0.070 4.070 5 H 0.146 0.854 6 C 0.296 3.704 7 O -0.478 6.478 8 N -0.329 5.329 9 C -0.062 4.062 10 C 0.161 3.839 11 H 0.024 0.976 12 C -0.190 4.190 13 C -0.575 4.575 14 H 0.072 0.928 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.786 3.214 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.125 4.125 22 C -0.091 4.091 23 C -0.179 4.179 24 C -0.078 4.078 25 N -0.226 5.226 26 C -0.068 4.068 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.189 0.811 42 H 0.194 0.806 43 H 0.196 0.804 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.913 18.600 1.516 20.270 hybrid contribution -0.228 -1.211 0.611 1.376 sum 7.685 17.388 2.128 19.130 Atomic orbital electron populations 1.21856 0.94700 1.00846 1.03030 1.20968 0.96081 0.97078 0.95207 1.21750 1.00697 0.93187 1.03351 1.20435 0.91185 0.92421 1.02966 0.85359 1.21032 0.77715 0.88666 0.83017 1.90614 1.56563 1.65159 1.35419 1.48233 1.57188 1.21075 1.06436 1.21869 1.00850 0.97200 0.86233 1.18492 0.90368 0.79681 0.95391 0.97648 1.21870 0.97318 1.00966 0.98824 1.21538 1.04204 0.95868 1.35844 0.92783 1.25697 0.96353 0.99829 0.96500 1.70009 1.20642 1.18642 1.46221 0.85521 0.78737 0.77944 0.79213 1.18834 1.21068 1.20123 1.20410 0.94879 1.00288 0.96916 1.21925 0.94009 0.96062 0.97066 1.22531 0.95758 0.99847 0.99804 1.23368 1.01182 0.93133 0.90146 1.67661 1.06114 1.19406 1.29454 1.22493 0.90794 0.95856 0.97680 0.90716 0.91307 0.95569 0.92827 0.93019 0.91511 0.90379 0.93122 0.88467 0.90799 0.91542 0.95881 0.93186 0.92644 0.81052 0.80644 0.80354 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 8.95 71.98 0.64 -3.24 16 2 C -0.07 -1.94 2.04 -10.79 -0.02 -1.96 16 3 C -0.13 -2.39 9.00 71.98 0.65 -1.74 16 4 C -0.05 -1.36 1.45 -12.28 -0.02 -1.38 16 5 H 0.13 2.68 5.61 -2.39 -0.01 2.66 16 6 C 0.51 20.75 5.18 87.66 0.45 21.21 16 7 O -0.60 -30.39 14.35 -3.01 -0.04 -30.43 16 8 N -0.60 -25.24 2.75 -826.81 -2.28 -27.51 16 9 C 0.08 2.45 9.43 127.77 1.21 3.66 16 10 C 0.26 13.85 2.62 44.25 0.12 13.96 16 11 H 0.01 0.35 6.91 -2.39 -0.02 0.34 16 12 C -0.13 -6.30 8.96 71.98 0.64 -5.66 16 13 C -0.54 -29.84 8.37 25.60 0.21 -29.62 16 14 H 0.05 2.97 7.65 -2.91 -0.02 2.95 16 15 C 0.02 0.88 5.30 84.65 0.45 1.33 16 16 N -0.92 -53.65 11.32 21.45 0.24 -53.40 16 17 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 C -0.12 -3.37 3.73 -19.77 -0.07 -3.44 16 22 C -0.06 -1.27 9.81 22.47 0.22 -1.05 16 23 C -0.16 -2.83 10.11 22.36 0.23 -2.61 16 24 C 0.08 1.82 11.18 84.69 0.95 2.76 16 25 N -0.52 -16.65 10.36 -195.84 -2.03 -18.68 16 26 C 0.09 2.98 9.94 84.67 0.84 3.83 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.03 0.90 6.33 -2.39 -0.02 0.88 16 30 H 0.05 1.69 7.14 -2.38 -0.02 1.68 16 31 H 0.05 0.96 7.36 -2.39 -0.02 0.94 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.10 2.01 5.89 -2.39 -0.01 2.00 16 36 H 0.07 2.29 6.44 -2.39 -0.02 2.28 16 37 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 38 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 2.15 6.67 -2.39 -0.02 2.13 16 40 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.17 2.00 8.00 -2.91 -0.02 1.98 16 42 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.18 2.93 8.06 -2.91 -0.02 2.91 16 44 H 0.13 4.93 7.10 -2.91 -0.02 4.91 16 Total: -1.00 -75.67 350.17 5.40 -70.27 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.98 Total: 17.57 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 6.50 Total: -3.95 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -4.06 Total: -99.60 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.04 Total: -30.43 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -75.67 5.40 -70.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340982107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.371 kcal (2) G-P(sol) polarization free energy of solvation -75.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds