Wall clock time and date at job start Tue Mar 31 2020 08:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47605 * 2 1 4 4 C 1.52997 * 109.47283 * 120.00412 * 2 1 3 5 5 C 1.50697 * 109.47152 * 294.99920 * 4 2 1 6 6 H 1.08005 * 120.00111 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00183 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99881 * 179.72356 * 7 5 4 9 9 Si 1.86795 * 120.00017 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.46624 * 269.72176 * 9 7 5 11 11 H 1.48492 * 109.47233 * 29.72221 * 9 7 5 12 12 H 1.48500 * 109.47101 * 149.72634 * 9 7 5 13 13 C 1.53004 * 109.47123 * 240.00025 * 2 1 3 14 14 N 1.46900 * 109.47225 * 174.72858 * 13 2 1 15 15 C 1.46905 * 110.99970 * 287.67681 * 14 13 2 16 16 C 1.46899 * 111.00031 * 163.72390 * 14 13 2 17 17 C 1.50701 * 109.47063 * 190.00107 * 16 14 13 18 18 C 1.38361 * 119.85085 * 269.72391 * 17 16 14 19 19 C 1.37961 * 120.14184 * 179.72466 * 18 17 16 20 20 C 1.39571 * 119.85218 * 0.55178 * 19 18 17 21 21 C 1.47846 * 120.14634 * 179.70693 * 20 19 18 22 22 N 1.34780 * 119.99752 * 0.02562 * 21 20 19 23 23 O 1.21549 * 120.00223 * 180.02562 * 21 20 19 24 24 C 1.39576 * 119.71257 * 359.72319 * 20 19 18 25 25 C 1.37959 * 119.85296 * 0.02562 * 24 20 19 26 26 H 1.09002 * 109.47386 * 176.67053 * 1 2 3 27 27 H 1.08997 * 109.47095 * 296.66941 * 1 2 3 28 28 H 1.09003 * 109.47357 * 56.67232 * 1 2 3 29 29 H 1.08997 * 109.47529 * 175.00006 * 4 2 1 30 30 H 1.09003 * 109.47084 * 54.99529 * 4 2 1 31 31 H 0.96998 * 120.00397 * 180.27792 * 8 7 5 32 32 H 1.09000 * 109.47133 * 294.73414 * 13 2 1 33 33 H 1.09003 * 109.46832 * 54.72932 * 13 2 1 34 34 H 1.09000 * 109.46784 * 54.28293 * 15 14 13 35 35 H 1.09003 * 109.46924 * 174.28200 * 15 14 13 36 36 H 1.08994 * 109.47279 * 294.27959 * 15 14 13 37 37 H 1.08998 * 109.47327 * 309.99826 * 16 14 13 38 38 H 1.09000 * 109.47149 * 70.00057 * 16 14 13 39 39 H 1.07996 * 119.92805 * 0.02562 * 18 17 16 40 40 H 1.07998 * 120.07469 * 180.25142 * 19 18 17 41 41 H 0.96998 * 120.00151 * 0.02562 * 22 21 20 42 42 H 0.97004 * 120.00039 * 180.02562 * 22 21 20 43 43 H 1.07999 * 120.07356 * 179.97438 * 24 20 19 44 44 H 1.07999 * 119.92610 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9740 2.3758 7 6 1.9924 -0.4025 3.7283 8 7 1.6492 0.2796 4.7991 9 14 2.9627 -1.9891 3.9027 10 1 2.0234 -3.1327 4.0255 11 1 3.8202 -2.1791 2.7053 12 1 3.8158 -1.9167 5.1161 13 6 2.0400 -0.7213 -1.2493 14 7 3.5035 -0.6121 -1.3146 15 6 3.9142 0.7531 -1.6692 16 6 4.0629 -1.5913 -2.2559 17 6 5.5633 -1.6209 -2.1172 18 6 6.3433 -0.7820 -2.8932 19 6 7.7170 -0.8001 -2.7671 20 6 8.3202 -1.6754 -1.8626 21 6 9.7921 -1.7048 -1.7268 22 7 10.5545 -0.8848 -2.4771 23 8 10.3146 -2.4684 -0.9387 24 6 7.5277 -2.5231 -1.0870 25 6 6.1549 -2.4913 -1.2191 26 1 -0.3634 -1.0259 -0.0597 27 1 -0.3633 0.4612 0.9183 28 1 -0.3634 0.5646 -0.8587 29 1 3.1263 -0.7995 1.2055 30 1 1.6053 -1.7199 1.2950 31 1 1.8996 -0.0414 5.6795 32 1 1.7557 -1.7725 -1.2034 33 1 1.6016 -0.2648 -2.1367 34 1 3.4608 1.4607 -0.9750 35 1 4.9998 0.8324 -1.6116 36 1 3.5868 0.9791 -2.6839 37 1 3.6582 -2.5792 -2.0358 38 1 3.7977 -1.3087 -3.2746 39 1 5.8755 -0.1081 -3.5955 40 1 8.3246 -0.1419 -3.3704 41 1 10.1375 -0.2751 -3.1058 42 1 11.5203 -0.9043 -2.3884 43 1 7.9884 -3.2030 -0.3855 44 1 5.5406 -3.1470 -0.6198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349623147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:34 Heat of formation + Delta-G solvation = -21.012337 kcal Electronic energy + Delta-G solvation = -22842.787498 eV Core-core repulsion = 19566.439036 eV Total energy + Delta-G solvation = -3276.348462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -40.32726 -38.88151 -37.42493 -34.61529 -34.05209 -32.19701 -31.28166 -31.07022 -27.70922 -27.40570 -26.45336 -23.83285 -22.77231 -22.41645 -21.40705 -20.42454 -18.85235 -18.41192 -17.08257 -16.71828 -15.71809 -15.58906 -15.42837 -15.19141 -14.92131 -14.54384 -14.17686 -13.92712 -13.70946 -13.41299 -13.22905 -12.64045 -12.49990 -12.34199 -12.07451 -11.78532 -11.64862 -11.48429 -11.26584 -11.10847 -10.96571 -10.76413 -10.41163 -10.25632 -10.00663 -9.69985 -9.61562 -9.38384 -9.10501 -8.98096 -8.90457 -8.41137 -8.01034 -5.92636 -3.88160 0.66663 1.24771 2.66794 3.24076 3.40227 3.48404 3.55538 3.66241 4.27344 4.52438 4.56711 4.57770 4.72927 4.82043 5.11821 5.22534 5.34926 5.41916 5.44400 5.49376 5.56767 5.67951 5.73573 5.81518 5.90197 5.96346 6.07449 6.14696 6.16898 6.20307 6.26857 6.42019 6.47264 6.49514 6.74046 6.83002 6.97427 7.03709 7.13847 7.27155 7.34075 7.52890 7.71637 7.95860 7.98827 8.67102 9.13150 9.71847 11.21038 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.004128 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.206380 B = 6781.532449 C = 8057.604935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 H 0.062 0.938 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.910 5.910 9 Si 0.876 3.124 10 H -0.281 1.281 11 H -0.261 1.261 12 H -0.291 1.291 13 C 0.061 3.939 14 N -0.527 5.527 15 C 0.022 3.978 16 C 0.087 3.913 17 C -0.040 4.040 18 C -0.123 4.123 19 C -0.088 4.088 20 C -0.148 4.148 21 C 0.565 3.435 22 N -0.853 5.853 23 O -0.541 6.541 24 C -0.057 4.057 25 C -0.103 4.103 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.003 0.997 31 H 0.260 0.740 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.018 0.982 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.400 0.600 42 H 0.403 0.597 43 H 0.135 0.865 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.317 -1.912 -21.115 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 H 0.080 0.920 4 C -0.039 4.039 5 C -0.550 4.550 6 H 0.088 0.912 7 C -0.136 4.136 8 N -0.550 5.550 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.185 1.185 12 H -0.217 1.217 13 C -0.066 4.066 14 N -0.250 5.250 15 C -0.126 4.126 16 C -0.041 4.041 17 C -0.041 4.041 18 C -0.141 4.141 19 C -0.107 4.107 20 C -0.151 4.151 21 C 0.352 3.648 22 N -0.417 5.417 23 O -0.419 6.419 24 C -0.076 4.076 25 C -0.122 4.122 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.230 0.770 42 H 0.234 0.766 43 H 0.153 0.847 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.669 -2.570 -19.909 23.219 hybrid contribution 0.374 -0.207 -0.781 0.891 sum 12.043 -2.777 -20.690 24.100 Atomic orbital electron populations 1.21734 0.95990 1.00556 1.01089 1.21031 0.94483 0.99406 0.94320 0.91956 1.19527 0.97167 0.94831 0.92368 1.21224 1.34894 1.09401 0.89462 0.91246 1.25006 0.95666 0.96943 0.95962 1.69923 1.47654 1.39389 0.97990 0.86827 0.80743 0.84285 0.77805 1.20665 1.18491 1.21742 1.22346 0.85372 1.00965 0.97911 1.61907 1.10862 1.04127 1.48127 1.22488 1.01350 0.90308 0.98438 1.21161 0.90309 0.97960 0.94631 1.20060 0.95610 0.94188 0.94217 1.20976 0.93229 0.99492 1.00438 1.21151 0.95065 0.97319 0.97127 1.19805 0.92428 1.01330 1.01528 1.18356 0.87242 0.79563 0.79651 1.43757 1.10838 1.42798 1.44353 1.90817 1.74759 1.39533 1.36803 1.21295 0.93274 0.96489 0.96499 1.21117 0.94206 0.99226 0.97636 0.93802 0.91075 0.95063 0.94997 0.97823 0.93008 0.91362 0.95757 0.90466 0.91585 0.96335 0.89702 0.94104 0.85664 0.85911 0.77012 0.76569 0.84668 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.05 37.16 0.34 -2.11 16 2 C -0.07 -1.41 2.36 -90.62 -0.21 -1.62 16 3 H 0.06 1.24 6.51 -51.93 -0.34 0.90 16 4 C 0.00 -0.04 3.46 -27.89 -0.10 -0.13 16 5 C -0.51 -14.54 8.91 -34.44 -0.31 -14.85 16 6 H 0.07 2.11 7.31 -52.48 -0.38 1.73 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 9 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 C 0.06 0.94 4.36 -3.82 -0.02 0.93 16 14 N -0.53 -7.82 4.09 -244.36 -1.00 -8.82 16 15 C 0.02 0.30 8.94 60.07 0.54 0.83 16 16 C 0.09 1.04 5.10 -4.98 -0.03 1.01 16 17 C -0.04 -0.47 4.88 -104.53 -0.51 -0.98 16 18 C -0.12 -1.21 8.00 -39.64 -0.32 -1.52 16 19 C -0.09 -0.80 9.54 -39.19 -0.37 -1.17 16 20 C -0.15 -1.70 5.87 -104.97 -0.62 -2.31 16 21 C 0.57 6.65 8.05 -12.33 -0.10 6.55 16 22 N -0.85 -5.99 8.82 30.53 0.27 -5.72 16 23 O -0.54 -8.58 17.18 5.32 0.09 -8.49 16 24 C -0.06 -0.73 9.60 -39.18 -0.38 -1.10 16 25 C -0.10 -1.31 9.68 -39.64 -0.38 -1.70 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.46 6.86 -51.93 -0.36 1.10 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.03 0.79 6.69 -51.93 -0.35 0.44 16 30 H 0.00 0.08 7.57 -51.93 -0.39 -0.31 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.07 1.03 7.80 -51.93 -0.41 0.62 16 33 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 34 H 0.08 1.15 6.45 -51.93 -0.33 0.82 16 35 H 0.07 0.84 6.29 -51.93 -0.33 0.52 16 36 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 37 H 0.08 0.98 7.80 -51.93 -0.40 0.57 16 38 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16 39 H 0.13 0.99 8.04 -52.49 -0.42 0.57 16 40 H 0.12 0.67 6.41 -52.49 -0.34 0.34 16 41 H 0.40 1.64 6.86 -40.82 -0.28 1.36 16 42 H 0.40 2.29 8.93 -40.82 -0.36 1.92 16 43 H 0.14 1.75 7.65 -52.49 -0.40 1.35 16 44 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -34.74 353.60 -8.55 -43.29 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.79 Total: 0.82 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -2.56 Total: -16.37 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.04 Total: -42.33 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.74 -8.55 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349623147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.278 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds