Wall clock time and date at job start Tue Mar 31 2020 08:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47605 * 2 1 4 4 C 1.52997 * 109.47283 * 120.00412 * 2 1 3 5 5 C 1.50697 * 109.47152 * 294.99920 * 4 2 1 6 6 H 1.08005 * 120.00111 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00183 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99881 * 179.72356 * 7 5 4 9 9 Si 1.86795 * 120.00017 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.46624 * 269.72176 * 9 7 5 11 11 H 1.48492 * 109.47233 * 29.72221 * 9 7 5 12 12 H 1.48500 * 109.47101 * 149.72634 * 9 7 5 13 13 C 1.53004 * 109.47123 * 240.00025 * 2 1 3 14 14 N 1.46900 * 109.47225 * 174.72858 * 13 2 1 15 15 C 1.46905 * 110.99970 * 287.67681 * 14 13 2 16 16 C 1.46899 * 111.00031 * 163.72390 * 14 13 2 17 17 C 1.50701 * 109.47063 * 190.00107 * 16 14 13 18 18 C 1.38361 * 119.85085 * 269.72391 * 17 16 14 19 19 C 1.37961 * 120.14184 * 179.72466 * 18 17 16 20 20 C 1.39571 * 119.85218 * 0.55178 * 19 18 17 21 21 C 1.47846 * 120.14634 * 179.70693 * 20 19 18 22 22 N 1.34780 * 119.99752 * 0.02562 * 21 20 19 23 23 O 1.21549 * 120.00223 * 180.02562 * 21 20 19 24 24 C 1.39576 * 119.71257 * 359.72319 * 20 19 18 25 25 C 1.37959 * 119.85296 * 0.02562 * 24 20 19 26 26 H 1.09002 * 109.47386 * 176.67053 * 1 2 3 27 27 H 1.08997 * 109.47095 * 296.66941 * 1 2 3 28 28 H 1.09003 * 109.47357 * 56.67232 * 1 2 3 29 29 H 1.08997 * 109.47529 * 175.00006 * 4 2 1 30 30 H 1.09003 * 109.47084 * 54.99529 * 4 2 1 31 31 H 0.96998 * 120.00397 * 180.27792 * 8 7 5 32 32 H 1.09000 * 109.47133 * 294.73414 * 13 2 1 33 33 H 1.09003 * 109.46832 * 54.72932 * 13 2 1 34 34 H 1.09000 * 109.46784 * 54.28293 * 15 14 13 35 35 H 1.09003 * 109.46924 * 174.28200 * 15 14 13 36 36 H 1.08994 * 109.47279 * 294.27959 * 15 14 13 37 37 H 1.08998 * 109.47327 * 309.99826 * 16 14 13 38 38 H 1.09000 * 109.47149 * 70.00057 * 16 14 13 39 39 H 1.07996 * 119.92805 * 0.02562 * 18 17 16 40 40 H 1.07998 * 120.07469 * 180.25142 * 19 18 17 41 41 H 0.96998 * 120.00151 * 0.02562 * 22 21 20 42 42 H 0.97004 * 120.00039 * 180.02562 * 22 21 20 43 43 H 1.07999 * 120.07356 * 179.97438 * 24 20 19 44 44 H 1.07999 * 119.92610 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9740 2.3758 7 6 1.9924 -0.4025 3.7283 8 7 1.6492 0.2796 4.7991 9 14 2.9627 -1.9891 3.9027 10 1 2.0234 -3.1327 4.0255 11 1 3.8202 -2.1791 2.7053 12 1 3.8158 -1.9167 5.1161 13 6 2.0400 -0.7213 -1.2493 14 7 3.5035 -0.6121 -1.3146 15 6 3.9142 0.7531 -1.6692 16 6 4.0629 -1.5913 -2.2559 17 6 5.5633 -1.6209 -2.1172 18 6 6.3433 -0.7820 -2.8932 19 6 7.7170 -0.8001 -2.7671 20 6 8.3202 -1.6754 -1.8626 21 6 9.7921 -1.7048 -1.7268 22 7 10.5545 -0.8848 -2.4771 23 8 10.3146 -2.4684 -0.9387 24 6 7.5277 -2.5231 -1.0870 25 6 6.1549 -2.4913 -1.2191 26 1 -0.3634 -1.0259 -0.0597 27 1 -0.3633 0.4612 0.9183 28 1 -0.3634 0.5646 -0.8587 29 1 3.1263 -0.7995 1.2055 30 1 1.6053 -1.7199 1.2950 31 1 1.8996 -0.0414 5.6795 32 1 1.7557 -1.7725 -1.2034 33 1 1.6016 -0.2648 -2.1367 34 1 3.4608 1.4607 -0.9750 35 1 4.9998 0.8324 -1.6116 36 1 3.5868 0.9791 -2.6839 37 1 3.6582 -2.5792 -2.0358 38 1 3.7977 -1.3087 -3.2746 39 1 5.8755 -0.1081 -3.5955 40 1 8.3246 -0.1419 -3.3704 41 1 10.1375 -0.2751 -3.1058 42 1 11.5203 -0.9043 -2.3884 43 1 7.9884 -3.2030 -0.3855 44 1 5.5406 -3.1470 -0.6198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349623147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:31 Heat of formation + Delta-G solvation = -45.980055 kcal Electronic energy + Delta-G solvation = -22843.870180 eV Core-core repulsion = 19566.439036 eV Total energy + Delta-G solvation = -3277.431143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.18861 -39.83849 -38.56860 -36.09420 -34.92491 -34.17618 -32.33238 -31.88863 -29.62930 -28.34504 -27.63775 -25.11606 -24.02004 -23.60011 -22.49476 -21.26875 -20.41175 -19.17570 -18.89136 -17.88145 -16.81662 -16.63531 -16.42895 -16.17450 -16.02506 -15.84434 -15.41970 -15.07577 -14.99291 -14.64235 -14.44067 -14.18878 -13.79816 -13.63310 -13.41654 -13.03664 -12.81004 -12.76440 -12.65607 -12.55861 -12.30700 -11.99555 -11.91999 -11.68201 -11.36229 -11.23010 -11.09481 -10.91590 -10.77482 -10.68394 -9.93113 -9.81784 -9.04706 -8.22805 -6.22132 -0.19323 0.42788 1.34761 1.38930 1.51678 1.78782 2.40531 2.51406 2.78321 3.14287 3.29077 3.73361 3.83109 3.94681 4.01882 4.11252 4.28840 4.36163 4.42366 4.52674 4.57259 4.59663 4.69906 4.77015 4.83824 4.88168 4.92822 4.95655 5.06155 5.15344 5.18481 5.26381 5.37096 5.41934 5.53637 5.61372 5.67594 5.76215 5.82608 5.83668 5.92125 6.25665 6.28955 6.38909 6.40779 6.86251 7.25518 7.41234 8.94146 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.004128 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.206380 B = 6781.532449 C = 8057.604935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 H 0.049 0.951 4 C 0.007 3.993 5 C -0.512 4.512 6 H 0.034 0.966 7 C 0.003 3.997 8 N -0.957 5.957 9 Si 0.941 3.059 10 H -0.268 1.268 11 H -0.248 1.248 12 H -0.292 1.292 13 C 0.073 3.927 14 N -0.555 5.555 15 C 0.025 3.975 16 C 0.091 3.909 17 C -0.049 4.049 18 C -0.118 4.118 19 C -0.074 4.074 20 C -0.159 4.159 21 C 0.561 3.439 22 N -0.827 5.827 23 O -0.594 6.594 24 C -0.079 4.079 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.005 0.995 31 H 0.262 0.738 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.155 0.845 40 H 0.166 0.834 41 H 0.418 0.582 42 H 0.413 0.587 43 H 0.118 0.882 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 -1.892 -24.691 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.031 4.031 5 C -0.550 4.550 6 H 0.052 0.948 7 C -0.193 4.193 8 N -0.599 5.599 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.172 1.172 12 H -0.218 1.218 13 C -0.055 4.055 14 N -0.279 5.279 15 C -0.122 4.122 16 C -0.036 4.036 17 C -0.050 4.050 18 C -0.136 4.136 19 C -0.092 4.092 20 C -0.162 4.162 21 C 0.348 3.652 22 N -0.392 5.392 23 O -0.476 6.476 24 C -0.098 4.098 25 C -0.139 4.139 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.172 0.828 40 H 0.183 0.817 41 H 0.251 0.749 42 H 0.245 0.755 43 H 0.136 0.864 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.448 -2.514 -23.549 26.755 hybrid contribution 0.122 -0.091 0.287 0.325 sum 12.570 -2.605 -23.262 26.569 Atomic orbital electron populations 1.21656 0.95251 1.01361 1.00639 1.20938 0.95169 0.98619 0.94312 0.93297 1.19411 0.96535 0.94571 0.92563 1.21602 1.33471 1.08442 0.91499 0.94819 1.25902 0.97056 1.00603 0.95720 1.70073 1.49646 1.41578 0.98622 0.85789 0.79487 0.80182 0.77998 1.19372 1.17174 1.21806 1.22118 0.86135 1.00780 0.96447 1.61786 1.10482 1.05397 1.50267 1.22438 1.01456 0.89132 0.99224 1.21162 0.90056 0.97170 0.95209 1.20173 0.95895 0.94467 0.94424 1.21312 0.93384 0.98902 1.00041 1.21560 0.95366 0.96361 0.95947 1.19924 0.92321 1.01854 1.02144 1.18510 0.87650 0.79550 0.79517 1.43541 1.11184 1.41386 1.43061 1.90792 1.75552 1.41957 1.39291 1.21281 0.93731 0.97417 0.97357 1.21121 0.94087 1.00147 0.98581 0.92788 0.94776 0.91785 0.95878 0.97663 0.92957 0.90805 0.93117 0.92888 0.91120 0.93639 0.89777 0.91518 0.82760 0.81702 0.74929 0.75498 0.86353 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.05 71.98 0.65 -3.93 16 2 C -0.07 -2.66 2.36 -10.79 -0.03 -2.68 16 3 H 0.05 1.94 6.51 -2.39 -0.02 1.93 16 4 C 0.01 0.31 3.46 29.85 0.10 0.42 16 5 C -0.51 -29.90 8.91 25.60 0.23 -29.67 16 6 H 0.03 2.15 7.31 -2.91 -0.02 2.13 16 7 C 0.00 0.16 5.47 84.65 0.46 0.62 16 8 N -0.96 -61.97 13.96 21.45 0.30 -61.67 16 9 Si 0.94 46.86 27.47 68.60 1.88 48.75 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.25 -11.75 6.54 99.48 0.65 -11.10 16 12 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 13 C 0.07 2.02 4.36 86.30 0.38 2.40 16 14 N -0.56 -15.00 4.09 -927.03 -3.79 -18.79 16 15 C 0.03 0.60 8.94 127.69 1.14 1.74 16 16 C 0.09 1.87 5.10 85.56 0.44 2.31 16 17 C -0.05 -1.03 4.88 -19.81 -0.10 -1.12 16 18 C -0.12 -1.84 8.00 22.23 0.18 -1.67 16 19 C -0.07 -1.07 9.54 22.53 0.21 -0.85 16 20 C -0.16 -3.43 5.87 -20.09 -0.12 -3.55 16 21 C 0.56 12.60 8.05 86.79 0.70 13.30 16 22 N -0.83 -9.43 8.82 -175.60 -1.55 -10.97 16 23 O -0.59 -19.18 17.18 -3.87 -0.07 -19.25 16 24 C -0.08 -2.05 9.60 22.53 0.22 -1.83 16 25 C -0.12 -3.02 9.68 22.23 0.22 -2.81 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.03 1.41 6.86 -2.39 -0.02 1.40 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.02 1.13 6.69 -2.39 -0.02 1.11 16 30 H 0.01 0.24 7.57 -2.39 -0.02 0.22 16 31 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 32 H 0.07 1.98 7.80 -2.39 -0.02 1.96 16 33 H 0.05 1.17 8.05 -2.39 -0.02 1.15 16 34 H 0.05 1.51 6.45 -2.39 -0.02 1.49 16 35 H 0.07 1.59 6.29 -2.39 -0.02 1.57 16 36 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 37 H 0.08 1.73 7.80 -2.39 -0.02 1.71 16 38 H 0.07 1.04 8.05 -2.39 -0.02 1.03 16 39 H 0.15 1.54 8.04 -2.91 -0.02 1.52 16 40 H 0.17 0.88 6.41 -2.91 -0.02 0.86 16 41 H 0.42 1.72 6.86 -92.71 -0.64 1.08 16 42 H 0.41 3.70 8.93 -92.71 -0.83 2.87 16 43 H 0.12 3.34 7.65 -2.91 -0.02 3.31 16 44 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -79.19 353.60 0.95 -78.24 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -0.51 Total: 11.03 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 4.68 Total: -27.34 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -5.04 Total: -91.43 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.07 Total: -19.25 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.88 Total: 48.75 kcal Total: -79.19 0.95 -78.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349623147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.263 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds