Wall clock time and date at job start Tue Mar 31 2020 08:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47162 * 2 1 4 4 C 1.52991 * 109.47384 * 240.00098 * 2 1 3 5 5 N 1.46503 * 109.47430 * 184.00089 * 4 2 1 6 6 C 1.34777 * 120.00060 * 184.23059 * 5 4 2 7 7 O 1.21277 * 120.00034 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99979 * 180.02562 * 6 5 4 9 9 H 1.09007 * 109.46729 * 299.99720 * 8 6 5 10 10 C 1.50699 * 109.47575 * 59.99769 * 8 6 5 11 11 H 1.08005 * 119.99693 * 33.60080 * 10 8 6 12 12 C 1.37881 * 120.00132 * 213.61089 * 10 8 6 13 13 N 1.31517 * 119.99532 * 188.36523 * 12 10 8 14 14 Si 1.86795 * 120.00043 * 8.35699 * 12 10 8 15 15 H 1.48502 * 109.47351 * 275.29731 * 14 12 10 16 16 H 1.48497 * 109.47338 * 35.29618 * 14 12 10 17 17 H 1.48501 * 109.47140 * 155.29730 * 14 12 10 18 18 C 1.50700 * 109.47352 * 179.97438 * 8 6 5 19 19 C 1.38231 * 120.00128 * 294.18016 * 18 8 6 20 20 C 1.38238 * 120.00076 * 179.78889 * 19 18 8 21 21 C 1.38227 * 119.99976 * 0.43461 * 20 19 18 22 22 C 1.38237 * 119.99971 * 359.81782 * 21 20 19 23 23 C 1.38232 * 120.00366 * 359.97423 * 22 21 20 24 24 N 1.46899 * 109.47327 * 119.99858 * 2 1 3 25 25 C 1.46900 * 110.99906 * 290.98262 * 24 2 1 26 26 C 1.46904 * 110.99799 * 54.93410 * 24 2 1 27 27 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47039 * 299.99822 * 1 2 3 29 29 H 1.08999 * 109.47498 * 60.00191 * 1 2 3 30 30 H 1.09001 * 109.47504 * 63.99638 * 4 2 1 31 31 H 1.09005 * 109.47131 * 304.00166 * 4 2 1 32 32 H 0.96993 * 119.99661 * 4.23205 * 5 4 2 33 33 H 0.96998 * 119.99650 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.99530 * 359.97438 * 19 18 8 35 35 H 1.08000 * 119.99561 * 180.26680 * 20 19 18 36 36 H 1.08002 * 120.00234 * 179.83459 * 21 20 19 37 37 H 1.07998 * 119.99883 * 180.02562 * 22 21 20 38 38 H 1.07995 * 120.00773 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.47378 * 64.09962 * 25 24 2 40 40 H 1.08997 * 109.47470 * 184.09847 * 25 24 2 41 41 H 1.08997 * 109.47427 * 304.09905 * 25 24 2 42 42 H 1.08992 * 109.47093 * 60.00104 * 26 24 2 43 43 H 1.09009 * 109.46827 * 180.02562 * 26 24 2 44 44 H 1.09000 * 109.47141 * 299.99973 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5019 -0.8052 -1.2020 6 6 4.1809 -1.3268 -2.2428 7 8 3.5817 -1.7271 -3.2183 8 6 5.6845 -1.4138 -2.1940 9 1 6.1028 -0.4135 -2.0815 10 6 6.1007 -2.2669 -1.0235 11 1 5.4869 -3.1015 -0.7183 12 6 7.2651 -1.9819 -0.3422 13 7 7.7145 -2.8165 0.5695 14 14 8.2041 -0.4106 -0.7141 15 1 9.0999 -0.6328 -1.8775 16 1 7.2438 0.6772 -1.0296 17 1 9.0154 -0.0269 0.4690 18 6 6.1938 -2.0310 -3.4710 19 6 5.8950 -3.3472 -3.7697 20 6 6.3585 -3.9120 -4.9432 21 6 7.1282 -3.1634 -5.8136 22 6 7.4314 -1.8488 -5.5125 23 6 6.9644 -1.2826 -4.3411 24 7 2.0197 -0.6924 1.1994 25 6 1.7322 0.0865 2.4112 26 6 1.4523 -2.0441 1.2955 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.7364 -0.1677 -2.1378 31 1 1.6193 -1.7261 -1.2858 32 1 3.9810 -0.4854 -0.4216 33 1 8.5338 -2.6162 1.0485 34 1 5.2969 -3.9332 -3.0876 35 1 6.1214 -4.9391 -5.1785 36 1 7.4926 -3.6055 -6.7292 37 1 8.0325 -1.2638 -6.1928 38 1 7.2009 -0.2554 -4.1059 39 1 0.6533 0.1667 2.5442 40 1 2.1687 -0.4127 3.2762 41 1 2.1611 1.0837 2.3125 42 1 1.7391 -2.6218 0.4169 43 1 1.8310 -2.5342 2.1925 44 1 0.3655 -1.9790 1.3487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464604686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:23 Heat of formation + Delta-G solvation = -8.862753 kcal Electronic energy + Delta-G solvation = -23733.416622 eV Core-core repulsion = 20457.595006 eV Total energy + Delta-G solvation = -3275.821616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.92 seconds Orbital eigenvalues (eV) -39.39127 -38.49973 -37.49510 -33.68565 -33.53677 -31.43148 -30.85256 -30.04976 -27.97499 -27.55173 -25.99253 -24.12320 -23.24362 -21.76683 -20.89571 -19.78738 -19.00221 -17.05697 -16.33422 -16.22501 -15.98138 -15.50630 -14.70259 -14.49600 -14.43215 -14.28171 -13.72852 -13.67260 -13.33395 -12.83224 -12.62543 -12.52424 -12.49143 -12.24864 -12.14891 -11.88847 -11.78447 -11.74537 -11.43065 -11.15020 -11.03443 -10.97995 -10.74202 -10.37022 -10.17991 -9.86117 -9.46657 -8.85232 -8.61695 -8.30122 -8.16351 -8.05081 -7.72892 -6.22299 -4.24238 2.23810 2.30373 3.21943 3.27241 3.31076 3.69469 3.91045 4.18260 4.29490 4.71845 4.83999 4.99486 5.09695 5.24150 5.27734 5.31725 5.55022 5.57761 5.60875 5.62133 5.67633 5.76180 5.79673 5.87375 5.90295 5.97413 6.03766 6.13609 6.15978 6.30031 6.38420 6.40957 6.54687 6.82979 6.93507 7.06445 7.10300 7.24555 7.29649 7.34321 7.39923 7.68845 7.88763 8.29819 8.49552 8.79503 9.26017 9.36764 10.89158 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.005576 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.937058 B = 5019.868353 C = 6089.004321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.087 0.913 4 C 0.131 3.869 5 N -0.716 5.716 6 C 0.532 3.468 7 O -0.569 6.569 8 C 0.023 3.977 9 H 0.067 0.933 10 C -0.506 4.506 11 H 0.082 0.918 12 C 0.087 3.913 13 N -0.882 5.882 14 Si 0.864 3.136 15 H -0.268 1.268 16 H -0.264 1.264 17 H -0.286 1.286 18 C -0.024 4.024 19 C -0.071 4.071 20 C -0.130 4.130 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.136 4.136 24 N -0.533 5.533 25 C 0.024 3.976 26 C 0.021 3.979 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.412 0.588 33 H 0.267 0.733 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.023 0.977 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 5.842 -0.588 11.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.042 4.042 3 H 0.105 0.895 4 C 0.006 3.994 5 N -0.368 5.368 6 C 0.321 3.679 7 O -0.448 6.448 8 C 0.001 3.999 9 H 0.084 0.916 10 C -0.543 4.543 11 H 0.100 0.900 12 C -0.118 4.118 13 N -0.518 5.518 14 Si 0.691 3.309 15 H -0.194 1.194 16 H -0.189 1.189 17 H -0.212 1.212 18 C -0.025 4.025 19 C -0.089 4.089 20 C -0.148 4.148 21 C -0.163 4.163 22 C -0.148 4.148 23 C -0.155 4.155 24 N -0.256 5.256 25 C -0.124 4.124 26 C -0.127 4.127 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.248 0.752 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -9.458 5.466 -1.148 10.984 hybrid contribution 0.000 0.958 0.458 1.061 sum -9.458 6.424 -0.690 11.454 Atomic orbital electron populations 1.22378 0.96947 1.02626 1.02328 1.22006 0.93013 0.98626 0.90605 0.89500 1.21206 0.82543 0.99958 0.95689 1.45725 1.05611 1.64432 1.21072 1.21114 0.90877 0.74876 0.81034 1.90579 1.71470 1.49153 1.33621 1.18486 0.89001 0.98665 0.93741 0.91555 1.20497 1.08470 1.14716 1.10638 0.90021 1.24958 0.96195 0.96239 0.94415 1.69881 1.21867 1.35306 1.24705 0.86997 0.80690 0.84632 0.78535 1.19350 1.18870 1.21153 1.20079 0.94552 0.94093 0.93809 1.20831 0.97834 0.94793 0.95444 1.21020 0.99288 0.99194 0.95303 1.20840 1.01061 0.94783 0.99579 1.20864 1.01134 0.95512 0.97244 1.20960 1.00403 0.99235 0.94859 1.62100 1.58654 1.02878 1.01953 1.22388 0.98545 0.98607 0.92854 1.22450 0.96632 0.90244 1.03403 0.91860 0.92316 0.91765 0.91837 0.92370 0.75173 0.92272 0.86560 0.87216 0.87423 0.87363 0.87515 0.95842 0.91264 0.91528 0.90733 0.91397 0.95572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 8.45 37.16 0.31 -1.49 16 2 C 0.07 0.81 2.48 -67.72 -0.17 0.64 16 3 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 4 C 0.13 2.00 4.83 -4.04 -0.02 1.99 16 5 N -0.72 -13.37 5.32 -60.30 -0.32 -13.70 16 6 C 0.53 11.79 7.04 -10.99 -0.08 11.71 16 7 O -0.57 -13.72 15.41 5.56 0.09 -13.63 16 8 C 0.02 0.53 1.99 -94.08 -0.19 0.34 16 9 H 0.07 1.52 4.79 -51.93 -0.25 1.27 16 10 C -0.51 -13.20 8.01 -34.44 -0.28 -13.48 16 11 H 0.08 2.36 8.06 -52.48 -0.42 1.93 16 12 C 0.09 2.32 5.47 -17.82 -0.10 2.23 16 13 N -0.88 -25.29 13.96 55.43 0.77 -24.52 16 14 Si 0.86 20.18 27.30 -169.99 -4.64 15.54 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.26 -5.75 6.41 56.52 0.36 -5.39 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.02 -0.56 4.30 -104.62 -0.45 -1.01 16 19 C -0.07 -1.60 8.29 -39.58 -0.33 -1.93 16 20 C -0.13 -2.54 10.05 -39.59 -0.40 -2.94 16 21 C -0.14 -2.62 10.05 -39.59 -0.40 -3.02 16 22 C -0.13 -2.42 10.05 -39.58 -0.40 -2.81 16 23 C -0.14 -2.87 9.67 -39.58 -0.38 -3.25 16 24 N -0.53 -6.96 4.41 -243.19 -1.07 -8.03 16 25 C 0.02 0.26 9.29 60.06 0.56 0.82 16 26 C 0.02 0.26 8.79 60.07 0.53 0.79 16 27 H 0.06 0.64 6.34 -51.93 -0.33 0.31 16 28 H 0.06 0.53 6.74 -51.93 -0.35 0.18 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.94 6.72 -51.93 -0.35 0.59 16 32 H 0.41 7.71 7.99 -40.82 -0.33 7.38 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.12 2.72 7.90 -52.49 -0.41 2.30 16 35 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.11 2.07 7.95 -52.49 -0.42 1.65 16 39 H 0.02 0.22 6.76 -51.93 -0.35 -0.13 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 42 H 0.07 1.08 6.53 -51.93 -0.34 0.74 16 43 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.03 0.28 6.22 -51.93 -0.32 -0.04 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -30.28 352.92 -8.48 -38.76 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -6.84 Total: 11.67 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -1.78 Total: -11.41 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.62 Total: -46.25 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.64 Total: 15.54 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.28 -8.48 -38.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464604686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.897 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.92 seconds