Wall clock time and date at job start Tue Mar 31 2020 08:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47162 * 2 1 4 4 C 1.52991 * 109.47384 * 240.00098 * 2 1 3 5 5 N 1.46503 * 109.47430 * 184.00089 * 4 2 1 6 6 C 1.34777 * 120.00060 * 184.23059 * 5 4 2 7 7 O 1.21277 * 120.00034 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99979 * 180.02562 * 6 5 4 9 9 H 1.09007 * 109.46729 * 299.99720 * 8 6 5 10 10 C 1.50699 * 109.47575 * 59.99769 * 8 6 5 11 11 H 1.08005 * 119.99693 * 33.60080 * 10 8 6 12 12 C 1.37881 * 120.00132 * 213.61089 * 10 8 6 13 13 N 1.31517 * 119.99532 * 188.36523 * 12 10 8 14 14 Si 1.86795 * 120.00043 * 8.35699 * 12 10 8 15 15 H 1.48502 * 109.47351 * 275.29731 * 14 12 10 16 16 H 1.48497 * 109.47338 * 35.29618 * 14 12 10 17 17 H 1.48501 * 109.47140 * 155.29730 * 14 12 10 18 18 C 1.50700 * 109.47352 * 179.97438 * 8 6 5 19 19 C 1.38231 * 120.00128 * 294.18016 * 18 8 6 20 20 C 1.38238 * 120.00076 * 179.78889 * 19 18 8 21 21 C 1.38227 * 119.99976 * 0.43461 * 20 19 18 22 22 C 1.38237 * 119.99971 * 359.81782 * 21 20 19 23 23 C 1.38232 * 120.00366 * 359.97423 * 22 21 20 24 24 N 1.46899 * 109.47327 * 119.99858 * 2 1 3 25 25 C 1.46900 * 110.99906 * 290.98262 * 24 2 1 26 26 C 1.46904 * 110.99799 * 54.93410 * 24 2 1 27 27 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47039 * 299.99822 * 1 2 3 29 29 H 1.08999 * 109.47498 * 60.00191 * 1 2 3 30 30 H 1.09001 * 109.47504 * 63.99638 * 4 2 1 31 31 H 1.09005 * 109.47131 * 304.00166 * 4 2 1 32 32 H 0.96993 * 119.99661 * 4.23205 * 5 4 2 33 33 H 0.96998 * 119.99650 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.99530 * 359.97438 * 19 18 8 35 35 H 1.08000 * 119.99561 * 180.26680 * 20 19 18 36 36 H 1.08002 * 120.00234 * 179.83459 * 21 20 19 37 37 H 1.07998 * 119.99883 * 180.02562 * 22 21 20 38 38 H 1.07995 * 120.00773 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.47378 * 64.09962 * 25 24 2 40 40 H 1.08997 * 109.47470 * 184.09847 * 25 24 2 41 41 H 1.08997 * 109.47427 * 304.09905 * 25 24 2 42 42 H 1.08992 * 109.47093 * 60.00104 * 26 24 2 43 43 H 1.09009 * 109.46827 * 180.02562 * 26 24 2 44 44 H 1.09000 * 109.47141 * 299.99973 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5019 -0.8052 -1.2020 6 6 4.1809 -1.3268 -2.2428 7 8 3.5817 -1.7271 -3.2183 8 6 5.6845 -1.4138 -2.1940 9 1 6.1028 -0.4135 -2.0815 10 6 6.1007 -2.2669 -1.0235 11 1 5.4869 -3.1015 -0.7183 12 6 7.2651 -1.9819 -0.3422 13 7 7.7145 -2.8165 0.5695 14 14 8.2041 -0.4106 -0.7141 15 1 9.0999 -0.6328 -1.8775 16 1 7.2438 0.6772 -1.0296 17 1 9.0154 -0.0269 0.4690 18 6 6.1938 -2.0310 -3.4710 19 6 5.8950 -3.3472 -3.7697 20 6 6.3585 -3.9120 -4.9432 21 6 7.1282 -3.1634 -5.8136 22 6 7.4314 -1.8488 -5.5125 23 6 6.9644 -1.2826 -4.3411 24 7 2.0197 -0.6924 1.1994 25 6 1.7322 0.0865 2.4112 26 6 1.4523 -2.0441 1.2955 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.7364 -0.1677 -2.1378 31 1 1.6193 -1.7261 -1.2858 32 1 3.9810 -0.4854 -0.4216 33 1 8.5338 -2.6162 1.0485 34 1 5.2969 -3.9332 -3.0876 35 1 6.1214 -4.9391 -5.1785 36 1 7.4926 -3.6055 -6.7292 37 1 8.0325 -1.2638 -6.1928 38 1 7.2009 -0.2554 -4.1059 39 1 0.6533 0.1667 2.5442 40 1 2.1687 -0.4127 3.2762 41 1 2.1611 1.0837 2.3125 42 1 1.7391 -2.6218 0.4169 43 1 1.8310 -2.5342 2.1925 44 1 0.3655 -1.9790 1.3487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464604686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:16 Heat of formation + Delta-G solvation = -28.870393 kcal Electronic energy + Delta-G solvation = -23734.284219 eV Core-core repulsion = 20457.595006 eV Total energy + Delta-G solvation = -3276.689213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99331 -39.77617 -38.94935 -35.47991 -35.13922 -33.30713 -31.94969 -31.60678 -29.57645 -28.56351 -27.25225 -25.49253 -24.81643 -23.34406 -22.45998 -21.03692 -20.52328 -19.07174 -17.86594 -17.67599 -17.27996 -16.92421 -16.34004 -15.91178 -15.74073 -15.63011 -15.17856 -15.14421 -14.76800 -14.39576 -14.16117 -14.03054 -13.88558 -13.68621 -13.39606 -13.12434 -13.01347 -12.90034 -12.76354 -12.73534 -12.43483 -12.14997 -11.99618 -11.96399 -11.77198 -11.58953 -11.38353 -10.83792 -10.50553 -9.82580 -9.62289 -9.34983 -9.17598 -8.30653 -6.36885 0.66563 0.73228 1.36030 1.39695 1.45526 1.93369 2.33634 2.54678 2.98982 3.06188 3.21028 3.77715 4.03399 4.11912 4.23574 4.28013 4.31824 4.33908 4.40226 4.40714 4.43472 4.58703 4.64584 4.65557 4.68200 4.78023 4.84275 4.86262 4.92361 5.00551 5.07756 5.09727 5.22886 5.26263 5.34007 5.44508 5.71182 5.72906 5.76380 5.98117 6.12439 6.16837 6.24106 6.33191 6.64243 6.83178 7.27153 7.54448 8.84434 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.005576 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.937058 B = 5019.868353 C = 6089.004321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.074 3.926 3 H 0.098 0.902 4 C 0.129 3.871 5 N -0.706 5.706 6 C 0.527 3.473 7 O -0.593 6.593 8 C 0.026 3.974 9 H 0.074 0.926 10 C -0.495 4.495 11 H 0.035 0.965 12 C 0.036 3.964 13 N -0.930 5.930 14 Si 0.922 3.078 15 H -0.266 1.266 16 H -0.237 1.237 17 H -0.283 1.283 18 C -0.055 4.055 19 C -0.103 4.103 20 C -0.134 4.134 21 C -0.137 4.137 22 C -0.125 4.125 23 C -0.152 4.152 24 N -0.558 5.558 25 C 0.026 3.974 26 C 0.025 3.975 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.412 0.588 33 H 0.269 0.731 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.121 0.879 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 8.061 -2.134 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.034 4.034 3 H 0.116 0.884 4 C 0.005 3.995 5 N -0.357 5.357 6 C 0.316 3.684 7 O -0.475 6.475 8 C 0.004 3.996 9 H 0.092 0.908 10 C -0.533 4.533 11 H 0.053 0.947 12 C -0.164 4.164 13 N -0.568 5.568 14 Si 0.746 3.254 15 H -0.191 1.191 16 H -0.160 1.160 17 H -0.209 1.209 18 C -0.056 4.056 19 C -0.121 4.121 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.142 4.142 23 C -0.171 4.171 24 N -0.282 5.282 25 C -0.121 4.121 26 C -0.123 4.123 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.248 0.752 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.151 0.849 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.139 0.861 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.370 7.706 -2.680 12.424 hybrid contribution -0.094 0.159 0.887 0.906 sum -9.464 7.865 -1.792 12.435 Atomic orbital electron populations 1.22304 0.94703 1.02794 1.03658 1.21945 0.94628 0.98227 0.88635 0.88423 1.21409 0.80257 0.99897 0.97937 1.45710 1.07199 1.62898 1.19849 1.20997 0.90727 0.75160 0.81558 1.90548 1.71731 1.50446 1.34756 1.18411 0.89895 0.98211 0.93068 0.90837 1.20389 1.07753 1.13498 1.11659 0.94702 1.25706 0.97106 0.99417 0.94143 1.70018 1.22779 1.37552 1.26466 0.86066 0.79720 0.81279 0.78341 1.19062 1.16050 1.20898 1.20121 0.96247 0.94642 0.94564 1.20800 0.99398 0.95111 0.96834 1.21343 0.98955 1.00599 0.94316 1.21336 0.99317 0.94539 1.00312 1.21358 1.00219 0.96021 0.96642 1.21245 1.00241 0.99984 0.95586 1.62052 1.59687 1.03271 1.03228 1.22403 0.99761 0.98460 0.91514 1.22349 0.97926 0.90127 1.01876 0.92265 0.90694 0.90691 0.91390 0.93661 0.75178 0.92208 0.89572 0.84891 0.83195 0.83353 0.86063 0.94059 0.91617 0.90721 0.93456 0.91752 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.45 71.98 0.61 -2.47 16 2 C 0.07 1.72 2.48 44.91 0.11 1.83 16 3 H 0.10 2.08 8.03 -2.39 -0.02 2.06 16 4 C 0.13 3.98 4.83 86.38 0.42 4.40 16 5 N -0.71 -27.03 5.32 -463.07 -2.46 -29.49 16 6 C 0.53 24.13 7.04 87.66 0.62 24.74 16 7 O -0.59 -29.57 15.41 -3.02 -0.05 -29.61 16 8 C 0.03 1.22 1.99 -13.03 -0.03 1.19 16 9 H 0.07 3.33 4.79 -2.38 -0.01 3.32 16 10 C -0.50 -27.11 8.01 25.60 0.21 -26.91 16 11 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 12 C 0.04 2.01 5.47 84.66 0.46 2.47 16 13 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 14 Si 0.92 41.36 27.30 68.60 1.87 43.23 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.24 -9.50 6.41 99.48 0.64 -8.87 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 C -0.05 -2.55 4.30 -19.87 -0.09 -2.63 16 19 C -0.10 -4.80 8.29 22.27 0.18 -4.61 16 20 C -0.13 -5.12 10.05 22.27 0.22 -4.89 16 21 C -0.14 -4.50 10.05 22.27 0.22 -4.28 16 22 C -0.12 -4.20 10.05 22.27 0.22 -3.97 16 23 C -0.15 -6.12 9.67 22.27 0.22 -5.91 16 24 N -0.56 -14.32 4.41 -923.30 -4.07 -18.39 16 25 C 0.03 0.52 9.29 127.69 1.19 1.70 16 26 C 0.03 0.65 8.79 127.69 1.12 1.77 16 27 H 0.06 1.10 6.34 -2.39 -0.02 1.08 16 28 H 0.07 1.11 6.74 -2.39 -0.02 1.09 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.52 6.72 -2.38 -0.02 1.51 16 32 H 0.41 15.71 7.99 -92.71 -0.74 14.97 16 33 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.09 4.38 7.90 -2.91 -0.02 4.35 16 35 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.12 4.39 7.95 -2.91 -0.02 4.37 16 39 H 0.04 0.67 6.76 -2.39 -0.02 0.65 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 42 H 0.05 1.46 6.53 -2.39 -0.02 1.44 16 43 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.05 1.00 6.22 -2.39 -0.01 0.99 16 Total: -1.00 -68.80 352.92 1.46 -67.34 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: 0.18 Total: 39.61 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 5.69 Total: -17.56 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -6.23 Total: -103.01 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.61 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.87 Total: 43.23 kcal Total: -68.80 1.46 -67.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464604686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.466 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds