Wall clock time and date at job start Tue Mar 31 2020 09:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.47049 * 2 1 4 4 C 1.46848 * 111.00018 * 293.95483 * 3 2 1 5 5 C 1.53034 * 109.52283 * 174.16161 * 4 3 2 6 6 C 1.53118 * 109.27890 * 59.17903 * 5 4 3 7 7 C 1.53116 * 109.15958 * 302.34415 * 6 5 4 8 8 H 1.08999 * 109.50633 * 297.67163 * 7 6 5 9 9 N 1.46505 * 109.50178 * 177.59538 * 7 6 5 10 10 C 1.39675 * 119.99949 * 85.00477 * 9 7 6 11 11 C 1.39009 * 120.03609 * 359.97438 * 10 9 7 12 12 C 1.38150 * 120.05933 * 180.02562 * 11 10 9 13 13 C 1.38176 * 120.14188 * 0.27216 * 12 11 10 14 14 C 1.38918 * 120.08063 * 359.49786 * 13 12 11 15 15 O 1.35749 * 120.03364 * 180.25066 * 14 13 12 16 16 C 1.34828 * 117.00106 * 174.68955 * 15 14 13 17 17 H 1.08004 * 119.99850 * 5.05844 * 16 15 14 18 18 C 1.38647 * 120.00143 * 185.05659 * 16 15 14 19 19 N 1.31565 * 119.99853 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00172 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47211 * 89.99613 * 20 18 16 22 22 H 1.48503 * 109.47140 * 210.00044 * 20 18 16 23 23 H 1.48508 * 109.46664 * 329.99866 * 20 18 16 24 24 C 1.38749 * 120.04301 * 180.02562 * 10 9 7 25 25 C 1.46844 * 110.99963 * 169.74357 * 3 2 1 26 26 H 1.09005 * 109.46787 * 60.00147 * 1 2 3 27 27 H 1.08997 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47269 * 300.00009 * 1 2 3 29 29 H 1.09004 * 109.47397 * 240.00178 * 2 1 3 30 30 H 1.08999 * 109.47280 * 120.00335 * 2 1 3 31 31 H 1.08998 * 109.46377 * 54.14281 * 4 3 2 32 32 H 1.09002 * 109.45329 * 294.16869 * 4 3 2 33 33 H 1.09005 * 109.50116 * 299.23555 * 5 4 3 34 34 H 1.09003 * 109.53418 * 179.14185 * 5 4 3 35 35 H 1.09004 * 109.51961 * 182.44125 * 6 5 4 36 36 H 1.08995 * 109.52799 * 62.25016 * 6 5 4 37 37 H 0.96997 * 120.00256 * 264.99811 * 9 7 6 38 38 H 1.07999 * 119.97398 * 0.02562 * 11 10 9 39 39 H 1.08000 * 119.93192 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.96137 * 179.72683 * 13 12 11 41 41 H 0.97001 * 119.99221 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.06402 * 359.97438 * 24 10 9 43 43 H 1.09001 * 109.46424 * 65.82407 * 25 3 2 44 44 H 1.08999 * 109.46468 * 305.85600 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 -1.2529 5 6 2.0655 3.5422 -1.1597 6 6 3.5713 3.6469 -0.9026 7 6 3.9158 2.8881 0.3819 8 1 3.4028 3.3493 1.2258 9 7 5.3631 2.9349 0.6045 10 6 5.9342 4.0295 1.2576 11 6 5.1301 5.0751 1.6962 12 6 5.6945 6.1583 2.3418 13 6 7.0598 6.2086 2.5485 14 6 7.8683 5.1647 2.1168 15 8 9.2089 5.2128 2.3250 16 6 9.9212 4.1208 1.9814 17 1 9.4353 3.2927 1.4867 18 6 11.2775 4.0610 2.2630 19 7 11.9724 2.9952 1.9282 20 14 12.1177 5.4929 3.1192 21 1 12.0566 5.2953 4.5896 22 1 13.5370 5.5638 2.6878 23 1 11.4275 6.7580 2.7606 24 6 7.3048 4.0750 1.4684 25 6 3.4669 1.4315 0.2441 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 0.5963 1.9884 -1.4217 32 1 2.2032 1.5996 -2.0811 33 1 1.5227 4.0133 -0.3401 34 1 1.8202 4.0450 -2.0952 35 1 3.8500 4.6950 -0.7924 36 1 4.1152 3.2106 -1.7403 37 1 5.9247 2.2057 0.2984 38 1 4.0632 5.0408 1.5323 39 1 5.0678 6.9694 2.6821 40 1 7.4984 7.0588 3.0496 41 1 12.9213 2.9536 2.1250 42 1 7.9318 3.2641 1.1281 43 1 3.9913 0.9674 -0.5913 44 1 3.6979 0.8918 1.1625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658800003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:08 Heat of formation + Delta-G solvation = 1.157368 kcal Electronic energy + Delta-G solvation = -22894.334141 eV Core-core repulsion = 19618.947030 eV Total energy + Delta-G solvation = -3275.387111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.74702 -38.90418 -37.06261 -35.14461 -33.29424 -32.27146 -30.83923 -29.93818 -28.83819 -27.40340 -25.17375 -24.61445 -23.16621 -21.79163 -21.68879 -20.42716 -19.79905 -17.80969 -17.50586 -16.43644 -15.78286 -15.41366 -15.28855 -14.81936 -14.58679 -14.24290 -13.99645 -13.91132 -13.67801 -13.58985 -13.40750 -12.96520 -12.60513 -12.24564 -12.18319 -12.15446 -12.00598 -11.76715 -11.58877 -11.34253 -10.96725 -10.95238 -10.77523 -10.65375 -10.53396 -10.47513 -10.15597 -9.40759 -9.37368 -8.77755 -8.59007 -7.43436 -6.81094 -6.35869 -4.02438 2.33520 2.50392 3.26135 3.29808 3.36890 3.45321 4.01390 4.29281 4.58429 4.67639 4.68605 4.79137 4.84772 4.95439 4.98113 5.11462 5.17596 5.18376 5.21241 5.32265 5.44019 5.49974 5.56913 5.64380 5.69256 5.71467 5.82313 5.86998 5.91993 5.97725 6.11538 6.18466 6.26802 6.36538 6.55274 6.60736 6.80796 6.83477 7.01898 7.26495 7.32755 7.56559 7.84808 7.96278 8.09535 8.22823 9.00522 9.65574 10.72173 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.003170 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.294043 B = 8831.728327 C = 9461.136058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.535 5.535 4 C 0.051 3.949 5 C -0.115 4.115 6 C -0.138 4.138 7 C 0.162 3.838 8 H 0.087 0.913 9 N -0.749 5.749 10 C 0.252 3.748 11 C -0.271 4.271 12 C -0.041 4.041 13 C -0.238 4.238 14 C 0.196 3.804 15 O -0.219 6.219 16 C -0.385 4.385 17 H 0.105 0.895 18 C 0.062 3.938 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.291 4.291 25 C 0.050 3.950 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.394 0.606 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.278 0.722 42 H 0.130 0.870 43 H 0.036 0.964 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.152 -2.921 -5.343 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 N -0.260 5.260 4 C -0.076 4.076 5 C -0.153 4.153 6 C -0.177 4.177 7 C 0.056 3.944 8 H 0.105 0.895 9 N -0.379 5.379 10 C 0.150 3.850 11 C -0.294 4.294 12 C -0.060 4.060 13 C -0.259 4.259 14 C 0.143 3.857 15 O -0.124 6.124 16 C -0.461 4.461 17 H 0.122 0.878 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.314 4.314 25 C -0.078 4.078 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.054 0.946 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.194 -2.581 -4.871 21.900 hybrid contribution 1.165 -0.440 -0.570 1.370 sum -20.029 -3.021 -5.441 20.974 Atomic orbital electron populations 1.21805 0.94770 1.01510 1.02535 1.22067 0.96151 0.88613 1.00872 1.61860 1.13460 1.15702 1.34994 1.22189 1.00779 0.94833 0.89850 1.21555 0.96277 0.95363 1.02098 1.22125 0.95446 1.01868 0.98237 1.20689 0.81741 0.94370 0.97619 0.89523 1.44546 1.05747 1.22242 1.65386 1.17451 0.91298 0.86552 0.89654 1.20187 0.98236 0.97344 1.13619 1.20380 0.93547 0.96363 0.95710 1.20026 0.92916 1.00661 1.12301 1.18796 0.83426 0.92463 0.91023 1.83581 1.14309 1.39865 1.74621 1.20748 0.91660 0.94721 1.38979 0.87765 1.24460 0.95305 0.97602 0.96729 1.69655 1.08774 1.27623 1.46206 0.86188 0.78103 0.82826 0.79833 1.19940 1.20912 1.18325 1.20611 0.93146 1.03420 1.14270 1.22277 0.87471 0.96921 1.01168 0.92687 0.92334 0.91716 0.94992 0.90654 0.90451 0.95013 0.90950 0.91398 0.90917 0.92209 0.77179 0.87448 0.87070 0.86991 0.91200 0.85270 0.94597 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.85 37.16 0.37 -0.66 16 2 C 0.05 0.42 5.68 -3.82 -0.02 0.40 16 3 N -0.53 -5.22 4.65 -234.67 -1.09 -6.31 16 4 C 0.05 0.45 5.29 -3.83 -0.02 0.43 16 5 C -0.11 -1.05 6.09 -26.65 -0.16 -1.21 16 6 C -0.14 -1.56 5.52 -26.61 -0.15 -1.71 16 7 C 0.16 2.00 2.31 -67.85 -0.16 1.84 16 8 H 0.09 1.16 6.49 -51.93 -0.34 0.82 16 9 N -0.75 -11.24 5.25 -52.10 -0.27 -11.51 16 10 C 0.25 4.66 6.63 -83.81 -0.56 4.11 16 11 C -0.27 -4.70 8.87 -39.33 -0.35 -5.05 16 12 C -0.04 -0.73 10.03 -39.64 -0.40 -1.12 16 13 C -0.24 -4.92 9.99 -39.35 -0.39 -5.32 16 14 C 0.20 4.66 6.64 -39.14 -0.26 4.40 16 15 O -0.22 -5.92 8.58 0.06 0.00 -5.92 16 16 C -0.39 -11.06 9.94 30.88 0.31 -10.75 16 17 H 0.11 3.06 5.43 -52.48 -0.29 2.77 16 18 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 19 N -0.88 -25.90 13.96 55.48 0.77 -25.12 16 20 Si 0.90 22.08 28.62 -169.99 -4.86 17.21 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.29 -6.42 9.01 -39.20 -0.35 -6.78 16 25 C 0.05 0.54 4.93 -3.84 -0.02 0.52 16 26 H 0.05 0.36 6.44 -51.93 -0.33 0.03 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 30 H 0.07 0.62 7.98 -51.93 -0.41 0.20 16 31 H 0.08 0.60 6.22 -51.93 -0.32 0.27 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.39 5.68 8.61 -40.82 -0.35 5.32 16 38 H 0.11 1.63 6.07 -52.49 -0.32 1.31 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.11 2.18 8.06 -52.49 -0.42 1.75 16 41 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -29.83 346.80 -9.32 -39.16 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.84 Total: 6.51 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -2.26 Total: -19.23 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.59 Total: -42.94 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: 0.00 Total: -5.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.83 -9.32 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658800003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.313 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds