Wall clock time and date at job start Tue Mar 31 2020 09:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.47049 * 2 1 4 4 C 1.46848 * 111.00018 * 293.95483 * 3 2 1 5 5 C 1.53034 * 109.52283 * 174.16161 * 4 3 2 6 6 C 1.53118 * 109.27890 * 59.17903 * 5 4 3 7 7 C 1.53116 * 109.15958 * 302.34415 * 6 5 4 8 8 H 1.08999 * 109.50633 * 297.67163 * 7 6 5 9 9 N 1.46505 * 109.50178 * 177.59538 * 7 6 5 10 10 C 1.39675 * 119.99949 * 85.00477 * 9 7 6 11 11 C 1.39009 * 120.03609 * 359.97438 * 10 9 7 12 12 C 1.38150 * 120.05933 * 180.02562 * 11 10 9 13 13 C 1.38176 * 120.14188 * 0.27216 * 12 11 10 14 14 C 1.38918 * 120.08063 * 359.49786 * 13 12 11 15 15 O 1.35749 * 120.03364 * 180.25066 * 14 13 12 16 16 C 1.34828 * 117.00106 * 174.68955 * 15 14 13 17 17 H 1.08004 * 119.99850 * 5.05844 * 16 15 14 18 18 C 1.38647 * 120.00143 * 185.05659 * 16 15 14 19 19 N 1.31565 * 119.99853 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00172 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47211 * 89.99613 * 20 18 16 22 22 H 1.48503 * 109.47140 * 210.00044 * 20 18 16 23 23 H 1.48508 * 109.46664 * 329.99866 * 20 18 16 24 24 C 1.38749 * 120.04301 * 180.02562 * 10 9 7 25 25 C 1.46844 * 110.99963 * 169.74357 * 3 2 1 26 26 H 1.09005 * 109.46787 * 60.00147 * 1 2 3 27 27 H 1.08997 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47269 * 300.00009 * 1 2 3 29 29 H 1.09004 * 109.47397 * 240.00178 * 2 1 3 30 30 H 1.08999 * 109.47280 * 120.00335 * 2 1 3 31 31 H 1.08998 * 109.46377 * 54.14281 * 4 3 2 32 32 H 1.09002 * 109.45329 * 294.16869 * 4 3 2 33 33 H 1.09005 * 109.50116 * 299.23555 * 5 4 3 34 34 H 1.09003 * 109.53418 * 179.14185 * 5 4 3 35 35 H 1.09004 * 109.51961 * 182.44125 * 6 5 4 36 36 H 1.08995 * 109.52799 * 62.25016 * 6 5 4 37 37 H 0.96997 * 120.00256 * 264.99811 * 9 7 6 38 38 H 1.07999 * 119.97398 * 0.02562 * 11 10 9 39 39 H 1.08000 * 119.93192 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.96137 * 179.72683 * 13 12 11 41 41 H 0.97001 * 119.99221 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.06402 * 359.97438 * 24 10 9 43 43 H 1.09001 * 109.46424 * 65.82407 * 25 3 2 44 44 H 1.08999 * 109.46468 * 305.85600 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 -1.2529 5 6 2.0655 3.5422 -1.1597 6 6 3.5713 3.6469 -0.9026 7 6 3.9158 2.8881 0.3819 8 1 3.4028 3.3493 1.2258 9 7 5.3631 2.9349 0.6045 10 6 5.9342 4.0295 1.2576 11 6 5.1301 5.0751 1.6962 12 6 5.6945 6.1583 2.3418 13 6 7.0598 6.2086 2.5485 14 6 7.8683 5.1647 2.1168 15 8 9.2089 5.2128 2.3250 16 6 9.9212 4.1208 1.9814 17 1 9.4353 3.2927 1.4867 18 6 11.2775 4.0610 2.2630 19 7 11.9724 2.9952 1.9282 20 14 12.1177 5.4929 3.1192 21 1 12.0566 5.2953 4.5896 22 1 13.5370 5.5638 2.6878 23 1 11.4275 6.7580 2.7606 24 6 7.3048 4.0750 1.4684 25 6 3.4669 1.4315 0.2441 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 0.5963 1.9884 -1.4217 32 1 2.2032 1.5996 -2.0811 33 1 1.5227 4.0133 -0.3401 34 1 1.8202 4.0450 -2.0952 35 1 3.8500 4.6950 -0.7924 36 1 4.1152 3.2106 -1.7403 37 1 5.9247 2.2057 0.2984 38 1 4.0632 5.0408 1.5323 39 1 5.0678 6.9694 2.6821 40 1 7.4984 7.0588 3.0496 41 1 12.9213 2.9536 2.1250 42 1 7.9318 3.2641 1.1281 43 1 3.9913 0.9674 -0.5913 44 1 3.6979 0.8918 1.1625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658800003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:05 Heat of formation + Delta-G solvation = -17.686227 kcal Electronic energy + Delta-G solvation = -22895.151261 eV Core-core repulsion = 19618.947030 eV Total energy + Delta-G solvation = -3276.204231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.41 seconds Orbital eigenvalues (eV) -41.03117 -40.25684 -38.59459 -36.35896 -34.48426 -34.16269 -31.83793 -31.01109 -30.32608 -28.70669 -27.14964 -25.43284 -24.14088 -23.28713 -22.78194 -21.64152 -20.84858 -19.74573 -19.14401 -17.46090 -17.09354 -16.88725 -16.26850 -16.01783 -15.93595 -15.66910 -15.41124 -15.23343 -14.97941 -14.78943 -14.55308 -14.27320 -14.10799 -13.85289 -13.45665 -13.34026 -12.83360 -12.78949 -12.61519 -12.60756 -12.48240 -12.11619 -12.04845 -11.93828 -11.77036 -11.54188 -11.44763 -11.31539 -10.96327 -10.63181 -9.35213 -9.17789 -8.48615 -8.26525 -6.20880 0.74214 0.88462 1.31676 1.36711 1.53152 2.28656 2.32273 2.82758 3.06394 3.15083 3.26645 3.74063 3.84208 3.98939 4.08731 4.19769 4.25911 4.28095 4.40743 4.44646 4.53019 4.58283 4.59968 4.63727 4.70139 4.76477 4.83635 4.90974 4.99768 5.01993 5.03931 5.12074 5.12545 5.23585 5.36323 5.40679 5.45153 5.47902 5.76502 5.84422 5.90732 6.03184 6.10711 6.18814 6.58748 6.80561 6.86657 7.63904 8.63287 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.003170 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.294043 B = 8831.728327 C = 9461.136058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.540 5.540 4 C 0.051 3.949 5 C -0.108 4.108 6 C -0.133 4.133 7 C 0.162 3.838 8 H 0.085 0.915 9 N -0.743 5.743 10 C 0.256 3.744 11 C -0.256 4.256 12 C -0.026 4.026 13 C -0.250 4.250 14 C 0.159 3.841 15 O -0.245 6.245 16 C -0.395 4.395 17 H 0.078 0.922 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.312 4.312 25 C 0.056 3.944 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.395 0.605 38 H 0.140 0.860 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.284 0.716 42 H 0.103 0.897 43 H 0.034 0.966 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.300 -1.703 -5.300 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.266 5.266 4 C -0.077 4.077 5 C -0.146 4.146 6 C -0.172 4.172 7 C 0.057 3.943 8 H 0.102 0.898 9 N -0.372 5.372 10 C 0.152 3.848 11 C -0.278 4.278 12 C -0.045 4.045 13 C -0.271 4.271 14 C 0.109 3.891 15 O -0.153 6.153 16 C -0.472 4.472 17 H 0.096 0.904 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.187 1.187 24 C -0.336 4.336 25 C -0.073 4.073 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.229 0.771 38 H 0.158 0.842 39 H 0.175 0.825 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.052 0.948 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.412 -1.388 -4.852 24.928 hybrid contribution 1.786 -0.884 -0.669 2.103 sum -22.625 -2.272 -5.522 23.400 Atomic orbital electron populations 1.21767 0.93464 1.02353 1.02496 1.22141 0.97173 0.87761 1.00876 1.61899 1.12246 1.16750 1.35659 1.22246 1.01763 0.94400 0.89276 1.21533 0.94229 0.95833 1.03045 1.22063 0.97237 1.00755 0.97183 1.20850 0.79581 0.95750 0.98101 0.89752 1.44719 1.07194 1.21155 1.64093 1.17538 0.90096 0.87893 0.89235 1.20624 0.99626 0.96149 1.11426 1.20886 0.92542 0.97286 0.93774 1.20317 0.94047 1.00093 1.12637 1.19386 0.82780 0.94334 0.92584 1.83523 1.15948 1.39198 1.76599 1.20685 0.92334 0.94955 1.39181 0.90425 1.25285 0.95778 1.00332 0.97565 1.69739 1.09379 1.29536 1.48089 0.85212 0.77481 0.79063 0.78926 1.19067 1.19181 1.18725 1.20565 0.94738 1.02765 1.15497 1.22146 0.88569 0.95592 1.00969 0.92157 0.91141 0.92220 0.94857 0.90847 0.88795 0.95257 0.90651 0.89809 0.91931 0.92867 0.77096 0.84216 0.82491 0.86027 0.90670 0.87949 0.94756 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.85 71.98 0.71 -0.90 16 2 C 0.05 0.70 5.68 86.30 0.49 1.19 16 3 N -0.54 -9.32 4.65 -896.36 -4.17 -13.49 16 4 C 0.05 0.75 5.29 86.32 0.46 1.21 16 5 C -0.11 -1.65 6.09 30.65 0.19 -1.46 16 6 C -0.13 -2.74 5.52 30.67 0.17 -2.57 16 7 C 0.16 3.70 2.31 45.04 0.10 3.81 16 8 H 0.08 2.01 6.49 -2.39 -0.02 1.99 16 9 N -0.74 -21.90 5.25 -318.76 -1.67 -23.58 16 10 C 0.26 9.34 6.63 38.20 0.25 9.60 16 11 C -0.26 -8.10 8.87 22.43 0.20 -7.90 16 12 C -0.03 -0.84 10.03 22.23 0.22 -0.62 16 13 C -0.25 -10.07 9.99 22.42 0.22 -9.85 16 14 C 0.16 7.80 6.64 22.56 0.15 7.95 16 15 O -0.25 -13.86 8.58 -22.71 -0.19 -14.05 16 16 C -0.40 -24.02 9.94 67.92 0.68 -23.34 16 17 H 0.08 4.96 5.43 -2.91 -0.02 4.95 16 18 C 0.01 0.49 5.49 84.83 0.47 0.95 16 19 N -0.93 -56.51 13.96 21.61 0.30 -56.21 16 20 Si 0.97 46.63 28.62 68.60 1.96 48.60 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.31 -14.35 9.01 22.52 0.20 -14.15 16 25 C 0.06 1.13 4.93 86.33 0.43 1.56 16 26 H 0.06 0.62 6.44 -2.38 -0.02 0.60 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.03 0.48 8.12 -2.38 -0.02 0.46 16 30 H 0.07 1.09 7.98 -2.39 -0.02 1.07 16 31 H 0.09 1.12 6.22 -2.39 -0.01 1.11 16 32 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.42 7.68 -2.38 -0.02 1.40 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.40 11.60 8.61 -92.71 -0.80 10.80 16 38 H 0.14 3.59 6.07 -2.91 -0.02 3.57 16 39 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.10 5.20 5.64 -2.91 -0.02 5.19 16 43 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.08 1.60 8.01 -2.39 -0.02 1.58 16 Total: -1.00 -67.60 346.80 1.36 -66.24 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.20 Total: 27.04 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 4.93 Total: -34.54 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -5.54 Total: -93.28 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.19 Total: -14.05 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.96 Total: 48.60 kcal Total: -67.60 1.36 -66.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658800003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.554 kcal (2) G-P(sol) polarization free energy of solvation -67.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.41 seconds