Wall clock time and date at job start Tue Mar 31 2020 08:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47314 * 2 1 4 4 C 1.50695 * 109.47107 * 119.99939 * 2 1 3 5 5 C 1.38380 * 119.92725 * 299.97538 * 4 2 1 6 6 C 1.38345 * 120.29148 * 180.02562 * 5 4 2 7 7 C 1.37976 * 120.14599 * 359.74639 * 6 5 4 8 8 C 1.39559 * 119.84998 * 0.50854 * 7 6 5 9 9 C 1.47849 * 120.14296 * 179.76578 * 8 7 6 10 10 O 1.21553 * 119.99954 * 179.72182 * 9 8 7 11 11 N 1.34777 * 119.99699 * 359.97438 * 9 8 7 12 12 C 1.46505 * 119.99724 * 179.72334 * 11 9 8 13 13 H 1.09000 * 109.46989 * 324.99747 * 12 11 9 14 14 C 1.52996 * 109.47130 * 85.00158 * 12 11 9 15 15 C 1.52998 * 109.47085 * 205.00369 * 12 11 9 16 16 N 1.46504 * 109.47491 * 54.99943 * 15 12 11 17 17 C 1.36932 * 120.00237 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00149 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00205 * 179.97438 * 17 16 15 20 20 N 1.31612 * 120.00246 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 119.99830 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.46852 * 89.99740 * 21 19 17 23 23 H 1.48493 * 109.47057 * 209.99860 * 21 19 17 24 24 H 1.48502 * 109.46666 * 329.99978 * 21 19 17 25 25 C 1.37942 * 119.92848 * 119.99758 * 4 2 1 26 26 H 1.09002 * 109.47018 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46707 * 300.00354 * 1 2 3 28 28 H 1.08997 * 109.46598 * 60.00186 * 1 2 3 29 29 H 1.09005 * 109.47123 * 240.00001 * 2 1 3 30 30 H 1.08998 * 109.46877 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46813 * 299.99995 * 3 2 1 32 32 H 1.08996 * 109.47070 * 59.99862 * 3 2 1 33 33 H 1.07997 * 119.85650 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.92514 * 180.02562 * 6 5 4 35 35 H 1.07997 * 120.07390 * 180.26934 * 7 6 5 36 36 H 0.97000 * 120.00483 * 359.72766 * 11 9 8 37 37 H 1.09003 * 109.47061 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47099 * 300.00036 * 14 12 11 39 39 H 1.09002 * 109.46807 * 60.00065 * 14 12 11 40 40 H 1.08995 * 109.47293 * 174.99915 * 15 12 11 41 41 H 1.09000 * 109.47194 * 294.99664 * 15 12 11 42 42 H 0.97000 * 119.99826 * 0.02562 * 16 15 12 43 43 H 0.97006 * 120.00328 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.07040 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6975 -0.2360 2.4865 6 6 2.1550 -0.8819 3.6212 7 6 2.9445 -2.0077 3.5068 8 6 3.2903 -2.4882 2.2430 9 6 4.1403 -3.6909 2.1130 10 8 4.4357 -4.1101 1.0109 11 7 4.5834 -4.3254 3.2164 12 6 5.4207 -5.5207 3.0876 13 1 5.1036 -6.0942 2.2166 14 6 6.8829 -5.1033 2.9189 15 6 5.2777 -6.3814 4.3444 16 7 3.8620 -6.6816 4.5723 17 6 3.4879 -7.4432 5.6471 18 1 4.2366 -7.8228 6.3266 19 6 2.1465 -7.7272 5.8633 20 7 1.7870 -8.4596 6.8961 21 14 0.8515 -7.0711 4.6876 22 1 0.6283 -8.0551 3.5981 23 1 -0.4192 -6.8508 5.4237 24 1 1.3163 -5.7860 4.1064 25 6 2.8253 -1.8318 1.1022 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.0764 0.6424 2.5815 34 1 1.8897 -0.5069 4.5985 35 1 3.2974 -2.5135 4.3934 36 1 4.3479 -3.9907 4.0959 37 1 7.5058 -5.9927 2.8226 38 1 6.9847 -4.4901 2.0235 39 1 7.1998 -4.5299 3.7900 40 1 5.8297 -7.3119 4.2123 41 1 5.6771 -5.8407 5.2024 42 1 3.1896 -6.3410 3.9618 43 1 0.8496 -8.6584 7.0470 44 1 3.0865 -2.2006 0.1213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699427494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:42 Heat of formation + Delta-G solvation = -16.213626 kcal Electronic energy + Delta-G solvation = -22980.112498 eV Core-core repulsion = 19703.972124 eV Total energy + Delta-G solvation = -3276.140374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 18.55 seconds Orbital eigenvalues (eV) -40.31976 -38.89504 -36.33815 -35.53449 -33.76833 -31.82181 -31.08209 -30.50363 -29.45467 -27.41536 -26.00437 -24.39158 -23.12759 -22.18121 -21.50380 -20.60049 -19.67220 -17.93791 -17.32688 -16.42679 -15.95230 -15.43473 -15.04499 -14.87709 -14.54317 -14.12471 -13.99942 -13.81805 -13.73857 -13.67678 -12.90685 -12.69108 -12.61616 -12.43553 -12.35831 -12.28945 -12.11791 -11.86083 -11.71821 -11.41396 -11.13916 -11.05381 -10.90342 -10.88468 -10.52085 -10.15585 -9.76712 -9.63943 -9.09517 -8.97101 -8.91268 -8.77282 -7.29694 -5.81205 -3.17489 0.80667 1.24415 2.92451 3.31920 3.35215 3.40323 3.44176 3.82515 4.38266 4.52934 4.55867 4.72519 4.87193 4.92251 4.97819 5.04350 5.14620 5.20799 5.32692 5.33249 5.33896 5.46711 5.54129 5.55391 5.57903 5.68183 5.75186 5.81107 5.88950 5.90633 5.93634 5.96897 6.03450 6.23707 6.27849 6.30170 6.36119 6.41649 6.56921 6.75286 6.82255 7.70710 7.94035 8.36143 8.38350 9.16142 9.88541 10.07943 11.36881 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.004409 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.782262 B = 6349.442323 C = 7468.226831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.093 4.093 6 C -0.124 4.124 7 C -0.087 4.087 8 C -0.128 4.128 9 C 0.556 3.444 10 O -0.545 6.545 11 N -0.710 5.710 12 C 0.129 3.871 13 H 0.088 0.912 14 C -0.157 4.157 15 C 0.149 3.851 16 N -0.756 5.756 17 C -0.247 4.247 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.881 3.119 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.060 4.060 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.403 0.597 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 20.486 -11.232 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.089 4.089 5 C -0.111 4.111 6 C -0.142 4.142 7 C -0.106 4.106 8 C -0.131 4.131 9 C 0.344 3.656 10 O -0.423 6.423 11 N -0.361 5.361 12 C 0.024 3.976 13 H 0.106 0.894 14 C -0.216 4.216 15 C 0.021 3.979 16 N -0.402 5.402 17 C -0.377 4.377 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.580 5.580 21 Si 0.711 3.289 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.078 4.078 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.239 0.761 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.455 20.007 -11.786 23.350 hybrid contribution -1.199 0.436 -0.160 1.286 sum 1.256 20.443 -11.946 23.711 Atomic orbital electron populations 1.21870 0.94207 1.02274 1.01882 1.20132 0.96046 0.96015 0.95326 1.21860 1.01323 0.95012 1.01887 1.19815 0.98270 0.95866 0.94969 1.21147 0.98668 0.99422 0.91876 1.21096 0.98338 0.95880 0.98896 1.21407 0.96767 0.95863 0.96560 1.20008 1.01563 0.97226 0.94316 1.18276 0.79549 0.83230 0.84576 1.90735 1.58823 1.66836 1.25950 1.46005 1.52056 1.29101 1.08946 1.21348 0.90053 0.85532 1.00625 0.89362 1.22087 0.95552 1.01980 1.01937 1.20975 0.87524 0.96215 0.93195 1.42720 1.01761 1.63813 1.31909 1.19044 0.93040 1.23711 1.01886 0.89086 1.24650 0.96721 0.99810 0.97637 1.69695 1.16347 1.42359 1.29564 0.86603 0.82232 0.78990 0.81038 1.21029 1.21639 1.20339 1.21153 0.94718 0.93481 0.98489 0.92345 0.92441 0.92317 0.90218 0.92454 0.92344 0.92458 0.85825 0.85337 0.85349 0.76063 0.91384 0.92349 0.92391 0.93840 0.94910 0.80409 0.92995 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.01 37.16 0.33 -0.80 16 2 C -0.06 -0.49 3.09 -91.77 -0.28 -0.77 16 3 C -0.14 -1.03 9.01 37.16 0.33 -0.69 16 4 C -0.09 -0.97 4.78 -104.68 -0.50 -1.47 16 5 C -0.09 -0.94 8.71 -39.49 -0.34 -1.28 16 6 C -0.12 -1.34 10.03 -39.64 -0.40 -1.74 16 7 C -0.09 -1.11 9.54 -39.19 -0.37 -1.48 16 8 C -0.13 -1.86 5.87 -104.97 -0.62 -2.47 16 9 C 0.56 9.32 7.74 -12.33 -0.10 9.23 16 10 O -0.54 -10.53 16.01 5.32 0.09 -10.44 16 11 N -0.71 -11.25 4.47 -54.75 -0.24 -11.49 16 12 C 0.13 2.09 2.73 -67.93 -0.19 1.90 16 13 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 14 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 15 C 0.15 2.76 5.82 -4.04 -0.02 2.74 16 16 N -0.76 -17.72 5.24 -59.91 -0.31 -18.03 16 17 C -0.25 -6.91 10.47 -15.06 -0.16 -7.07 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 20 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 21 Si 0.88 22.44 27.74 -169.99 -4.71 17.72 16 22 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 25 C -0.06 -0.79 9.21 -39.18 -0.36 -1.15 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.38 7.38 -51.93 -0.38 0.00 16 33 H 0.12 0.96 7.08 -52.49 -0.37 0.59 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.51 6.41 -52.49 -0.34 1.17 16 36 H 0.40 5.94 6.64 -40.82 -0.27 5.67 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.36 8.58 5.20 -40.82 -0.21 8.37 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.13 1.77 7.53 -52.49 -0.40 1.38 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -33.08 359.91 -8.38 -41.45 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.97 Total: 10.39 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.41 Total: -6.65 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.22 Total: -57.89 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.08 -8.38 -41.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699427494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.240 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.55 seconds