Wall clock time and date at job start Tue Mar 31 2020 08:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47314 * 2 1 4 4 C 1.50695 * 109.47107 * 119.99939 * 2 1 3 5 5 C 1.38380 * 119.92725 * 299.97538 * 4 2 1 6 6 C 1.38345 * 120.29148 * 180.02562 * 5 4 2 7 7 C 1.37976 * 120.14599 * 359.74639 * 6 5 4 8 8 C 1.39559 * 119.84998 * 0.50854 * 7 6 5 9 9 C 1.47849 * 120.14296 * 179.76578 * 8 7 6 10 10 O 1.21553 * 119.99954 * 179.72182 * 9 8 7 11 11 N 1.34777 * 119.99699 * 359.97438 * 9 8 7 12 12 C 1.46505 * 119.99724 * 179.72334 * 11 9 8 13 13 H 1.09000 * 109.46989 * 324.99747 * 12 11 9 14 14 C 1.52996 * 109.47130 * 85.00158 * 12 11 9 15 15 C 1.52998 * 109.47085 * 205.00369 * 12 11 9 16 16 N 1.46504 * 109.47491 * 54.99943 * 15 12 11 17 17 C 1.36932 * 120.00237 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00149 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00205 * 179.97438 * 17 16 15 20 20 N 1.31612 * 120.00246 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 119.99830 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.46852 * 89.99740 * 21 19 17 23 23 H 1.48493 * 109.47057 * 209.99860 * 21 19 17 24 24 H 1.48502 * 109.46666 * 329.99978 * 21 19 17 25 25 C 1.37942 * 119.92848 * 119.99758 * 4 2 1 26 26 H 1.09002 * 109.47018 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46707 * 300.00354 * 1 2 3 28 28 H 1.08997 * 109.46598 * 60.00186 * 1 2 3 29 29 H 1.09005 * 109.47123 * 240.00001 * 2 1 3 30 30 H 1.08998 * 109.46877 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46813 * 299.99995 * 3 2 1 32 32 H 1.08996 * 109.47070 * 59.99862 * 3 2 1 33 33 H 1.07997 * 119.85650 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.92514 * 180.02562 * 6 5 4 35 35 H 1.07997 * 120.07390 * 180.26934 * 7 6 5 36 36 H 0.97000 * 120.00483 * 359.72766 * 11 9 8 37 37 H 1.09003 * 109.47061 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47099 * 300.00036 * 14 12 11 39 39 H 1.09002 * 109.46807 * 60.00065 * 14 12 11 40 40 H 1.08995 * 109.47293 * 174.99915 * 15 12 11 41 41 H 1.09000 * 109.47194 * 294.99664 * 15 12 11 42 42 H 0.97000 * 119.99826 * 0.02562 * 16 15 12 43 43 H 0.97006 * 120.00328 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.07040 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6975 -0.2360 2.4865 6 6 2.1550 -0.8819 3.6212 7 6 2.9445 -2.0077 3.5068 8 6 3.2903 -2.4882 2.2430 9 6 4.1403 -3.6909 2.1130 10 8 4.4357 -4.1101 1.0109 11 7 4.5834 -4.3254 3.2164 12 6 5.4207 -5.5207 3.0876 13 1 5.1036 -6.0942 2.2166 14 6 6.8829 -5.1033 2.9189 15 6 5.2777 -6.3814 4.3444 16 7 3.8620 -6.6816 4.5723 17 6 3.4879 -7.4432 5.6471 18 1 4.2366 -7.8228 6.3266 19 6 2.1465 -7.7272 5.8633 20 7 1.7870 -8.4596 6.8961 21 14 0.8515 -7.0711 4.6876 22 1 0.6283 -8.0551 3.5981 23 1 -0.4192 -6.8508 5.4237 24 1 1.3163 -5.7860 4.1064 25 6 2.8253 -1.8318 1.1022 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.0764 0.6424 2.5815 34 1 1.8897 -0.5069 4.5985 35 1 3.2974 -2.5135 4.3934 36 1 4.3479 -3.9907 4.0959 37 1 7.5058 -5.9927 2.8226 38 1 6.9847 -4.4901 2.0235 39 1 7.1998 -4.5299 3.7900 40 1 5.8297 -7.3119 4.2123 41 1 5.6771 -5.8407 5.2024 42 1 3.1896 -6.3410 3.9618 43 1 0.8496 -8.6584 7.0470 44 1 3.0865 -2.2006 0.1213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699427494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:36 Heat of formation + Delta-G solvation = -36.621527 kcal Electronic energy + Delta-G solvation = -22980.997451 eV Core-core repulsion = 19703.972124 eV Total energy + Delta-G solvation = -3277.025327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.52 seconds Orbital eigenvalues (eV) -41.42970 -39.94547 -37.84141 -36.32001 -35.56609 -33.44713 -32.44225 -31.69381 -30.42865 -27.97495 -27.66867 -25.43403 -24.23264 -23.80738 -22.57554 -21.88228 -20.74536 -19.77871 -18.53235 -17.60590 -17.04468 -16.71179 -16.31609 -16.13390 -15.90594 -15.72438 -14.96907 -14.85045 -14.73295 -14.55245 -14.46054 -14.22029 -13.92548 -13.75460 -13.36682 -13.21730 -13.05353 -12.93736 -12.89221 -12.64778 -12.59046 -12.23407 -12.04683 -11.92915 -11.80711 -11.76062 -11.58310 -11.11988 -10.98123 -10.25907 -9.92313 -9.73621 -9.35287 -8.06382 -5.39549 -0.17586 0.35348 1.32118 1.35448 1.40991 1.79730 2.10135 2.42590 2.83082 3.26012 3.47450 3.62445 3.66968 3.86414 3.89149 4.06862 4.14852 4.22879 4.30637 4.30937 4.37933 4.46297 4.51032 4.75848 4.79231 4.82322 4.83024 4.89750 4.95809 4.99763 5.00865 5.06044 5.17266 5.26110 5.28472 5.31258 5.39646 5.43231 5.48532 5.60647 5.73145 5.91472 6.17488 6.45963 7.02978 7.11034 7.78571 7.96531 9.14902 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.004409 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.782262 B = 6349.442323 C = 7468.226831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.087 4.087 5 C -0.086 4.086 6 C -0.123 4.123 7 C -0.097 4.097 8 C -0.152 4.152 9 C 0.553 3.447 10 O -0.580 6.580 11 N -0.707 5.707 12 C 0.136 3.864 13 H 0.068 0.932 14 C -0.147 4.147 15 C 0.148 3.852 16 N -0.759 5.759 17 C -0.231 4.231 18 H 0.066 0.934 19 C -0.054 4.054 20 N -0.979 5.979 21 Si 0.944 3.056 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.258 1.258 25 C -0.076 4.076 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.134 0.866 36 H 0.409 0.591 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.363 0.637 43 H 0.258 0.742 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 23.229 -11.732 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.197 4.197 4 C -0.087 4.087 5 C -0.103 4.103 6 C -0.141 4.141 7 C -0.116 4.116 8 C -0.155 4.155 9 C 0.342 3.658 10 O -0.462 6.462 11 N -0.358 5.358 12 C 0.031 3.969 13 H 0.086 0.914 14 C -0.205 4.205 15 C 0.022 3.978 16 N -0.405 5.405 17 C -0.362 4.362 18 H 0.084 0.916 19 C -0.246 4.246 20 N -0.629 5.629 21 Si 0.773 3.227 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.183 1.183 25 C -0.095 4.095 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.172 0.828 34 H 0.174 0.826 35 H 0.152 0.848 36 H 0.246 0.754 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.196 0.804 43 H 0.067 0.933 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.980 22.782 -12.295 25.963 hybrid contribution -0.959 -0.394 0.005 1.037 sum 1.021 22.388 -12.290 25.560 Atomic orbital electron populations 1.21864 0.93328 1.01725 1.03121 1.20189 0.96678 0.96698 0.94043 1.21840 1.00862 0.93946 1.03083 1.20089 0.97204 0.94946 0.96501 1.21526 0.97896 0.99819 0.91105 1.21452 0.97212 0.94923 1.00482 1.21556 0.97388 0.96784 0.95877 1.19946 1.02758 0.97145 0.95651 1.18690 0.79329 0.83717 0.84070 1.90704 1.60289 1.68027 1.27141 1.45989 1.51911 1.28752 1.09174 1.21226 0.92041 0.85321 0.98325 0.91367 1.22003 0.93403 1.02777 1.02343 1.21144 0.84842 0.97010 0.94837 1.42736 1.03900 1.63189 1.30627 1.19050 0.92444 1.22686 1.01983 0.91614 1.25343 0.98934 1.00906 0.99463 1.69847 1.16644 1.44592 1.31837 0.85577 0.79492 0.78974 0.78706 1.21456 1.21670 1.18346 1.21204 0.95921 0.94676 0.97726 0.93767 0.91455 0.90880 0.90825 0.93189 0.91009 0.91434 0.82786 0.82648 0.84826 0.75366 0.89804 0.92934 0.90807 0.93424 0.93477 0.80421 0.93252 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.01 71.98 0.65 -1.24 16 2 C -0.06 -0.88 3.09 -11.54 -0.04 -0.92 16 3 C -0.14 -1.63 9.01 71.98 0.65 -0.99 16 4 C -0.09 -1.75 4.78 -19.90 -0.10 -1.85 16 5 C -0.09 -1.46 8.71 22.33 0.19 -1.26 16 6 C -0.12 -2.29 10.03 22.23 0.22 -2.07 16 7 C -0.10 -2.32 9.54 22.53 0.21 -2.10 16 8 C -0.15 -4.35 5.87 -20.09 -0.12 -4.47 16 9 C 0.55 18.57 7.74 86.79 0.67 19.24 16 10 O -0.58 -22.93 16.01 -3.88 -0.06 -22.99 16 11 N -0.71 -21.90 4.47 -445.40 -1.99 -23.89 16 12 C 0.14 4.27 2.73 44.99 0.12 4.39 16 13 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16 14 C -0.15 -3.63 9.48 71.98 0.68 -2.95 16 15 C 0.15 5.33 5.82 86.38 0.50 5.83 16 16 N -0.76 -34.94 5.24 -343.46 -1.80 -36.74 16 17 C -0.23 -12.93 10.47 84.03 0.88 -12.04 16 18 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 19 C -0.05 -3.19 5.50 84.86 0.47 -2.73 16 20 N -0.98 -62.16 13.97 21.65 0.30 -61.86 16 21 Si 0.94 46.43 27.74 68.60 1.90 48.33 16 22 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.26 -11.74 6.52 99.48 0.65 -11.09 16 25 C -0.08 -2.00 9.21 22.53 0.21 -1.80 16 26 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.75 7.38 -2.39 -0.02 0.73 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 1.20 7.87 -2.38 -0.02 1.18 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.65 7.38 -2.39 -0.02 0.64 16 33 H 0.15 1.69 7.08 -2.91 -0.02 1.67 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.13 2.92 6.41 -2.91 -0.02 2.90 16 36 H 0.41 11.58 6.64 -92.71 -0.62 10.96 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.36 16.74 5.20 -92.71 -0.48 16.25 16 43 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 44 H 0.12 3.37 7.53 -2.91 -0.02 3.35 16 Total: -1.00 -71.96 359.91 3.41 -68.55 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.16 Total: 33.56 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.21 Total: -4.95 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -3.49 Total: -122.50 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.06 Total: -22.99 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.90 Total: 48.33 kcal Total: -71.96 3.41 -68.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699427494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.927 kcal (2) G-P(sol) polarization free energy of solvation -71.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.53 seconds