Wall clock time and date at job start Tue Mar 31 2020 08:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46736 * 2 1 4 4 C 1.53004 * 109.46835 * 119.99989 * 2 1 3 5 5 N 1.46494 * 109.46879 * 175.00164 * 4 2 1 6 6 C 1.34777 * 119.99993 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99820 * 359.72234 * 6 5 4 8 8 C 1.50705 * 120.00241 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.46611 * 295.30268 * 8 6 5 10 10 C 1.52998 * 109.46918 * 55.29866 * 8 6 5 11 11 C 1.50695 * 109.47190 * 175.30019 * 8 6 5 12 12 C 1.38234 * 119.99931 * 245.66764 * 11 8 6 13 13 C 1.38235 * 119.99988 * 179.76994 * 12 11 8 14 14 C 1.38241 * 119.99613 * 0.50373 * 13 12 11 15 15 C 1.38231 * 120.00186 * 359.74600 * 14 13 12 16 16 C 1.38233 * 119.99917 * 0.02562 * 15 14 13 17 17 N 1.46497 * 109.46916 * 239.99816 * 2 1 3 18 18 C 1.36937 * 120.00055 * 85.00415 * 17 2 1 19 19 H 1.07996 * 119.99853 * 359.97438 * 18 17 2 20 20 C 1.38814 * 119.99769 * 179.97438 * 18 17 2 21 21 N 1.31615 * 119.99758 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00416 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46937 * 89.99533 * 22 20 18 24 24 H 1.48498 * 109.47346 * 210.00147 * 22 20 18 25 25 H 1.48505 * 109.46700 * 330.00119 * 22 20 18 26 26 H 1.08996 * 109.46730 * 60.00197 * 1 2 3 27 27 H 1.09006 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47346 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47401 * 54.99464 * 4 2 1 30 30 H 1.09005 * 109.46839 * 295.00105 * 4 2 1 31 31 H 0.96998 * 120.00577 * 359.97438 * 5 4 2 32 32 H 1.08990 * 109.47815 * 59.99974 * 9 8 6 33 33 H 1.09008 * 109.46701 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47221 * 299.99566 * 9 8 6 35 35 H 1.08996 * 109.47340 * 60.00319 * 10 8 6 36 36 H 1.09008 * 109.47104 * 180.02562 * 10 8 6 37 37 H 1.09000 * 109.47314 * 299.99703 * 10 8 6 38 38 H 1.07994 * 120.00155 * 359.97438 * 12 11 8 39 39 H 1.07996 * 120.00535 * 180.22709 * 13 12 11 40 40 H 1.08003 * 119.99370 * 179.72712 * 14 13 12 41 41 H 1.08002 * 119.99706 * 179.97438 * 15 14 13 42 42 H 1.07996 * 119.99732 * 179.97438 * 16 15 14 43 43 H 0.97005 * 119.99624 * 264.99855 * 17 2 1 44 44 H 0.97003 * 120.00261 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5702 -1.8801 3.1417 8 6 5.6749 -1.5368 2.1308 9 6 6.0758 -2.4239 0.9504 10 6 6.2792 -0.1430 1.9495 11 6 6.1867 -2.1435 3.4118 12 6 6.9723 -1.3931 4.2664 13 6 7.4378 -1.9481 5.4438 14 6 7.1262 -3.2569 5.7615 15 6 6.3448 -4.0089 4.9044 16 6 5.8754 -3.4524 3.7293 17 7 2.0183 -0.6906 -1.1961 18 6 2.1492 -0.0075 -2.3757 19 1 1.8920 1.0402 -2.4243 20 6 2.6124 -0.6619 -3.5090 21 7 2.7386 -0.0052 -4.6426 22 14 3.0579 -2.4741 -3.4248 23 1 1.8611 -3.2933 -3.7439 24 1 4.1335 -2.7655 -4.4062 25 1 3.5331 -2.8038 -2.0570 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -1.7198 1.2953 30 1 1.7516 -0.1583 2.1370 31 1 3.9824 -0.4628 0.4317 32 1 5.7057 -1.9852 0.0239 33 1 7.1622 -2.5022 0.9073 34 1 5.6453 -3.4170 1.0795 35 1 5.9936 0.4890 2.7904 36 1 7.3656 -0.2208 1.9057 37 1 5.9092 0.2958 1.0229 38 1 7.2198 -0.3722 4.0159 39 1 8.0486 -1.3607 6.1133 40 1 7.4935 -3.6919 6.6793 41 1 6.1017 -5.0316 5.1524 42 1 5.2653 -4.0401 3.0595 43 1 2.2490 -1.6318 -1.1525 44 1 3.0619 -0.4625 -5.4346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752919771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:10 Heat of formation + Delta-G solvation = -8.890803 kcal Electronic energy + Delta-G solvation = -23542.900799 eV Core-core repulsion = 20267.077966 eV Total energy + Delta-G solvation = -3275.822833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.55228 -38.68458 -36.53995 -35.24100 -33.59549 -31.89689 -31.07713 -29.81425 -29.29144 -27.49095 -26.05905 -23.91281 -23.33613 -22.30335 -21.55070 -20.28305 -19.20242 -17.93368 -17.18469 -16.53536 -15.84930 -15.48675 -15.00454 -14.79730 -14.47132 -14.21724 -14.05746 -13.73540 -13.48941 -13.07076 -12.79046 -12.60257 -12.49788 -12.27366 -12.23192 -12.17332 -11.98083 -11.79460 -11.65773 -11.57039 -11.01011 -10.87828 -10.85718 -10.73702 -10.44203 -10.09932 -9.67459 -9.50752 -9.05348 -8.90121 -8.74135 -8.72262 -7.39495 -5.85744 -3.22713 1.32268 1.41630 2.85221 3.29142 3.34180 3.38619 3.41851 3.87498 4.42641 4.50486 4.67238 4.85588 4.95481 5.01286 5.04416 5.10904 5.19618 5.32328 5.41852 5.43677 5.48483 5.57588 5.67181 5.70752 5.75279 5.76817 5.93842 5.96782 6.01974 6.04191 6.06766 6.11480 6.20208 6.36551 6.45057 6.49066 6.61989 6.65944 6.71304 6.93391 6.98159 7.82595 7.89820 8.32749 8.47188 9.10620 9.82884 10.02305 11.32205 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.004239 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.078751 B = 6604.469431 C = 7133.929480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.062 0.938 4 C 0.112 3.888 5 N -0.714 5.714 6 C 0.520 3.480 7 O -0.543 6.543 8 C -0.044 4.044 9 C -0.141 4.141 10 C -0.145 4.145 11 C -0.054 4.054 12 C -0.117 4.117 13 C -0.125 4.125 14 C -0.125 4.125 15 C -0.123 4.123 16 C -0.087 4.087 17 N -0.748 5.748 18 C -0.247 4.247 19 H 0.091 0.909 20 C 0.009 3.991 21 N -0.931 5.931 22 Si 0.881 3.119 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.276 1.276 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.409 0.591 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.362 0.638 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.869 -3.617 17.473 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.080 0.920 4 C -0.012 4.012 5 N -0.366 5.366 6 C 0.305 3.695 7 O -0.420 6.420 8 C -0.047 4.047 9 C -0.199 4.199 10 C -0.202 4.202 11 C -0.054 4.054 12 C -0.134 4.134 13 C -0.143 4.143 14 C -0.143 4.143 15 C -0.141 4.141 16 C -0.105 4.105 17 N -0.392 5.392 18 C -0.377 4.377 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.711 3.289 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.246 0.754 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.195 0.805 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.427 -3.742 17.945 20.175 hybrid contribution 0.377 -1.205 -0.515 1.363 sum 8.804 -4.947 17.430 20.144 Atomic orbital electron populations 1.22332 0.97780 1.01293 1.00923 1.20481 0.92860 0.96019 0.85096 0.92005 1.21739 0.79565 1.01062 0.98882 1.46011 1.08142 1.58929 1.23513 1.20298 0.89019 0.77772 0.82389 1.90680 1.70019 1.48062 1.33271 1.19720 0.92433 0.97696 0.94834 1.21915 1.02370 0.99335 0.96245 1.21976 1.01501 0.93910 1.02850 1.19328 0.97272 0.94047 0.94786 1.21138 0.98159 0.99901 0.94246 1.21067 1.00706 0.95537 0.96985 1.21103 0.99066 0.94653 0.99452 1.21088 0.98418 0.99886 0.94687 1.20936 0.97942 0.94794 0.96864 1.42839 1.79679 1.09574 1.07118 1.19053 1.37402 0.95631 0.85581 0.89086 1.24655 1.01299 0.97290 0.95516 1.69692 1.52300 1.35569 1.00257 0.86622 0.78257 0.86974 0.77051 1.21122 1.21722 1.20261 0.91830 0.93326 0.93850 0.91969 0.91480 0.75402 0.90968 0.91180 0.91948 0.91714 0.91041 0.91132 0.85669 0.86296 0.86450 0.86310 0.86400 0.80516 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.49 37.16 0.35 -2.32 16 2 C 0.16 2.92 3.05 -67.93 -0.21 2.71 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C 0.11 1.80 5.23 -4.04 -0.02 1.77 16 5 N -0.71 -11.20 5.21 -60.29 -0.31 -11.51 16 6 C 0.52 8.24 6.40 -10.98 -0.07 8.17 16 7 O -0.54 -10.21 15.33 5.56 0.09 -10.13 16 8 C -0.04 -0.56 0.72 -156.81 -0.11 -0.68 16 9 C -0.14 -1.75 8.17 37.16 0.30 -1.44 16 10 C -0.15 -1.56 7.00 37.16 0.26 -1.30 16 11 C -0.05 -0.71 4.33 -104.63 -0.45 -1.16 16 12 C -0.12 -1.35 8.99 -39.58 -0.36 -1.71 16 13 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 14 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 15 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 16 C -0.09 -1.16 8.15 -39.58 -0.32 -1.48 16 17 N -0.75 -16.20 4.36 -53.42 -0.23 -16.43 16 18 C -0.25 -6.46 10.41 -15.06 -0.16 -6.62 16 19 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -28.02 13.97 55.49 0.78 -27.25 16 22 Si 0.88 21.13 27.74 -169.99 -4.71 16.41 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.41 6.41 7.03 -40.82 -0.29 6.12 16 32 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 33 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 34 H 0.06 0.79 7.08 -51.93 -0.37 0.42 16 35 H 0.06 0.68 7.25 -51.93 -0.38 0.30 16 36 H 0.07 0.65 7.78 -51.92 -0.40 0.24 16 37 H 0.07 0.76 7.31 -51.93 -0.38 0.38 16 38 H 0.13 1.22 5.91 -52.49 -0.31 0.91 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.59 7.23 -52.49 -0.38 1.21 16 43 H 0.36 7.91 5.66 -40.82 -0.23 7.67 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -31.31 355.55 -8.08 -39.38 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.96 Total: 13.33 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -2.07 Total: -9.17 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.23 Total: -55.19 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.41 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.31 -8.08 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752919771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.492 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds