Wall clock time and date at job start Tue Mar 31 2020 08:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46736 * 2 1 4 4 C 1.53004 * 109.46835 * 119.99989 * 2 1 3 5 5 N 1.46494 * 109.46879 * 175.00164 * 4 2 1 6 6 C 1.34777 * 119.99993 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99820 * 359.72234 * 6 5 4 8 8 C 1.50705 * 120.00241 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.46611 * 295.30268 * 8 6 5 10 10 C 1.52998 * 109.46918 * 55.29866 * 8 6 5 11 11 C 1.50695 * 109.47190 * 175.30019 * 8 6 5 12 12 C 1.38234 * 119.99931 * 245.66764 * 11 8 6 13 13 C 1.38235 * 119.99988 * 179.76994 * 12 11 8 14 14 C 1.38241 * 119.99613 * 0.50373 * 13 12 11 15 15 C 1.38231 * 120.00186 * 359.74600 * 14 13 12 16 16 C 1.38233 * 119.99917 * 0.02562 * 15 14 13 17 17 N 1.46497 * 109.46916 * 239.99816 * 2 1 3 18 18 C 1.36937 * 120.00055 * 85.00415 * 17 2 1 19 19 H 1.07996 * 119.99853 * 359.97438 * 18 17 2 20 20 C 1.38814 * 119.99769 * 179.97438 * 18 17 2 21 21 N 1.31615 * 119.99758 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00416 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46937 * 89.99533 * 22 20 18 24 24 H 1.48498 * 109.47346 * 210.00147 * 22 20 18 25 25 H 1.48505 * 109.46700 * 330.00119 * 22 20 18 26 26 H 1.08996 * 109.46730 * 60.00197 * 1 2 3 27 27 H 1.09006 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47346 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47401 * 54.99464 * 4 2 1 30 30 H 1.09005 * 109.46839 * 295.00105 * 4 2 1 31 31 H 0.96998 * 120.00577 * 359.97438 * 5 4 2 32 32 H 1.08990 * 109.47815 * 59.99974 * 9 8 6 33 33 H 1.09008 * 109.46701 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47221 * 299.99566 * 9 8 6 35 35 H 1.08996 * 109.47340 * 60.00319 * 10 8 6 36 36 H 1.09008 * 109.47104 * 180.02562 * 10 8 6 37 37 H 1.09000 * 109.47314 * 299.99703 * 10 8 6 38 38 H 1.07994 * 120.00155 * 359.97438 * 12 11 8 39 39 H 1.07996 * 120.00535 * 180.22709 * 13 12 11 40 40 H 1.08003 * 119.99370 * 179.72712 * 14 13 12 41 41 H 1.08002 * 119.99706 * 179.97438 * 15 14 13 42 42 H 1.07996 * 119.99732 * 179.97438 * 16 15 14 43 43 H 0.97005 * 119.99624 * 264.99855 * 17 2 1 44 44 H 0.97003 * 120.00261 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1729 -1.4292 2.1908 7 8 3.5702 -1.8801 3.1417 8 6 5.6749 -1.5368 2.1308 9 6 6.0758 -2.4239 0.9504 10 6 6.2792 -0.1430 1.9495 11 6 6.1867 -2.1435 3.4118 12 6 6.9723 -1.3931 4.2664 13 6 7.4378 -1.9481 5.4438 14 6 7.1262 -3.2569 5.7615 15 6 6.3448 -4.0089 4.9044 16 6 5.8754 -3.4524 3.7293 17 7 2.0183 -0.6906 -1.1961 18 6 2.1492 -0.0075 -2.3757 19 1 1.8920 1.0402 -2.4243 20 6 2.6124 -0.6619 -3.5090 21 7 2.7386 -0.0052 -4.6426 22 14 3.0579 -2.4741 -3.4248 23 1 1.8611 -3.2933 -3.7439 24 1 4.1335 -2.7655 -4.4062 25 1 3.5331 -2.8038 -2.0570 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -1.7198 1.2953 30 1 1.7516 -0.1583 2.1370 31 1 3.9824 -0.4628 0.4317 32 1 5.7057 -1.9852 0.0239 33 1 7.1622 -2.5022 0.9073 34 1 5.6453 -3.4170 1.0795 35 1 5.9936 0.4890 2.7904 36 1 7.3656 -0.2208 1.9057 37 1 5.9092 0.2958 1.0229 38 1 7.2198 -0.3722 4.0159 39 1 8.0486 -1.3607 6.1133 40 1 7.4935 -3.6919 6.6793 41 1 6.1017 -5.0316 5.1524 42 1 5.2653 -4.0401 3.0595 43 1 2.2490 -1.6318 -1.1525 44 1 3.0619 -0.4625 -5.4346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752919771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:03 Heat of formation + Delta-G solvation = -27.955727 kcal Electronic energy + Delta-G solvation = -23543.727516 eV Core-core repulsion = 20267.077966 eV Total energy + Delta-G solvation = -3276.649550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.95 seconds Orbital eigenvalues (eV) -41.63409 -39.72568 -38.05063 -36.27809 -35.18650 -33.67729 -31.92239 -31.26545 -30.50437 -28.38389 -27.35731 -25.42341 -24.74338 -23.16764 -22.59942 -21.81512 -20.41529 -19.72197 -18.26005 -17.63131 -17.07333 -17.00475 -16.25384 -15.90140 -15.73599 -15.61184 -15.05360 -14.94560 -14.66968 -14.46164 -14.33851 -13.79696 -13.76816 -13.51932 -13.30578 -13.26310 -13.15358 -13.07908 -12.86229 -12.64557 -12.52476 -12.45794 -12.12799 -11.80494 -11.76697 -11.65492 -11.61582 -11.04637 -10.71461 -10.04868 -9.75564 -9.61032 -9.34511 -7.99866 -5.33576 0.45519 0.55693 1.38023 1.40959 1.47595 1.62735 2.24620 2.48888 2.96226 3.32704 3.47807 3.54682 3.74120 3.86716 3.94102 4.04176 4.18446 4.21157 4.29953 4.32775 4.58692 4.59138 4.62286 4.69767 4.70695 4.78449 4.80979 4.83090 4.88259 5.00071 5.09841 5.17290 5.18547 5.21102 5.22772 5.38491 5.56582 5.61778 5.65214 5.73544 5.81296 6.15263 6.23239 6.56743 7.08967 7.22564 7.83621 8.02729 9.21343 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.004239 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.078751 B = 6604.469431 C = 7133.929480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.061 0.939 4 C 0.121 3.879 5 N -0.714 5.714 6 C 0.519 3.481 7 O -0.575 6.575 8 C -0.039 4.039 9 C -0.139 4.139 10 C -0.143 4.143 11 C -0.072 4.072 12 C -0.125 4.125 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.134 4.134 16 C -0.111 4.111 17 N -0.748 5.748 18 C -0.222 4.222 19 H 0.063 0.937 20 C -0.055 4.055 21 N -0.981 5.981 22 Si 0.944 3.056 23 H -0.289 1.289 24 H -0.298 1.298 25 H -0.250 1.250 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.410 0.590 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.363 0.637 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.014 -4.153 19.835 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.079 0.921 4 C -0.004 4.004 5 N -0.365 5.365 6 C 0.306 3.694 7 O -0.454 6.454 8 C -0.042 4.042 9 C -0.197 4.197 10 C -0.200 4.200 11 C -0.072 4.072 12 C -0.143 4.143 13 C -0.145 4.145 14 C -0.145 4.145 15 C -0.151 4.151 16 C -0.129 4.129 17 N -0.392 5.392 18 C -0.353 4.353 19 H 0.081 0.919 20 C -0.247 4.247 21 N -0.632 5.632 22 Si 0.772 3.228 23 H -0.216 1.216 24 H -0.225 1.225 25 H -0.175 1.175 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.247 0.753 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.122 0.878 43 H 0.197 0.803 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.562 -4.275 20.362 22.898 hybrid contribution -0.025 -0.966 -1.139 1.493 sum 9.537 -5.241 19.223 22.089 Atomic orbital electron populations 1.22224 0.96366 1.01629 1.01475 1.20637 0.93735 0.95744 0.84241 0.92141 1.21613 0.79887 1.00673 0.98198 1.46035 1.08003 1.58901 1.23594 1.20839 0.90303 0.76719 0.81584 1.90658 1.70982 1.49337 1.34446 1.19711 0.90203 0.99034 0.95252 1.21911 1.03499 0.98706 0.95569 1.21994 1.02673 0.92485 1.02833 1.19433 0.98262 0.94242 0.95262 1.21410 0.97853 1.00626 0.94397 1.21459 1.00332 0.95815 0.96905 1.21469 0.98230 0.94730 1.00048 1.21352 0.98536 1.00878 0.94376 1.21007 0.98864 0.95287 0.97718 1.42806 1.79864 1.09563 1.06955 1.18981 1.34802 0.94535 0.86951 0.91935 1.25335 1.02557 1.01563 0.95264 1.69858 1.54731 1.37471 1.01135 0.85583 0.77441 0.81663 0.78070 1.21558 1.22469 1.17466 0.93923 0.93106 0.90655 0.92450 0.90041 0.75332 0.91811 0.89371 0.92766 0.91384 0.89010 0.91368 0.84020 0.83591 0.83832 0.84880 0.87767 0.80339 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.49 71.98 0.68 -4.22 16 2 C 0.16 5.60 3.05 45.00 0.14 5.73 16 3 H 0.06 2.10 8.08 -2.39 -0.02 2.09 16 4 C 0.12 3.67 5.23 86.38 0.45 4.12 16 5 N -0.71 -21.50 5.21 -463.06 -2.41 -23.91 16 6 C 0.52 15.92 6.40 87.66 0.56 16.48 16 7 O -0.57 -21.25 15.33 -3.03 -0.05 -21.29 16 8 C -0.04 -0.95 0.72 -53.68 -0.04 -0.99 16 9 C -0.14 -3.28 8.17 71.98 0.59 -2.69 16 10 C -0.14 -2.78 7.00 71.98 0.50 -2.28 16 11 C -0.07 -1.78 4.33 -19.87 -0.09 -1.87 16 12 C -0.13 -2.61 8.99 22.27 0.20 -2.41 16 13 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 14 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 15 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 16 C -0.11 -2.87 8.15 22.27 0.18 -2.69 16 17 N -0.75 -31.68 4.36 -322.94 -1.41 -33.08 16 18 C -0.22 -11.67 10.41 84.03 0.87 -10.79 16 19 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 20 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 21 N -0.98 -60.45 13.97 21.65 0.30 -60.15 16 22 Si 0.94 43.71 27.74 68.60 1.90 45.62 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.25 -10.33 6.52 99.48 0.65 -9.68 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.41 12.35 7.03 -92.71 -0.65 11.70 16 32 H 0.06 1.59 7.90 -2.39 -0.02 1.57 16 33 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.05 1.34 7.08 -2.39 -0.02 1.32 16 35 H 0.07 1.28 7.25 -2.39 -0.02 1.26 16 36 H 0.09 1.42 7.78 -2.38 -0.02 1.40 16 37 H 0.07 1.36 7.31 -2.39 -0.02 1.34 16 38 H 0.14 2.37 5.91 -2.91 -0.02 2.35 16 39 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.10 2.87 7.23 -2.91 -0.02 2.85 16 43 H 0.36 15.28 5.66 -92.70 -0.52 14.75 16 44 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -67.89 355.55 3.29 -64.60 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: -0.24 Total: 39.36 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 5.20 Total: -11.14 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -3.52 Total: -117.14 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.90 Total: 45.62 kcal Total: -67.89 3.29 -64.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752919771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.647 kcal (2) G-P(sol) polarization free energy of solvation -67.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.95 seconds