Wall clock time and date at job start Tue Mar 31 2020 08:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 O 1.21284 * 119.99693 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00154 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00123 * 359.97438 * 7 5 4 9 9 C 1.46505 * 120.00007 * 179.97438 * 7 5 4 10 10 C 1.52997 * 109.47306 * 89.99619 * 9 7 5 11 11 N 1.46496 * 109.47326 * 180.02562 * 10 9 7 12 12 C 1.36940 * 119.99962 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00534 * 359.97438 * 12 11 10 14 14 C 1.38817 * 119.99691 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99943 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00033 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46971 * 90.00177 * 16 14 12 18 18 H 1.48507 * 109.46985 * 209.99850 * 16 14 12 19 19 H 1.48502 * 109.47281 * 330.00061 * 16 14 12 20 20 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 21 21 C 1.38245 * 119.99431 * 59.73158 * 20 2 1 22 22 C 1.38237 * 119.99269 * 179.78957 * 21 20 2 23 23 C 1.38234 * 120.00384 * 0.43420 * 22 21 20 24 24 C 1.38233 * 119.99643 * 359.81821 * 23 22 21 25 25 C 1.38228 * 120.00126 * 240.00037 * 20 2 1 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 30 30 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 31 31 H 1.09009 * 109.46915 * 90.00673 * 8 7 5 32 32 H 1.09000 * 109.47236 * 210.00124 * 8 7 5 33 33 H 1.09001 * 109.47562 * 330.01021 * 8 7 5 34 34 H 1.08998 * 109.46720 * 209.99621 * 9 7 5 35 35 H 1.09001 * 109.46877 * 329.99610 * 9 7 5 36 36 H 1.09006 * 109.46964 * 299.99911 * 10 9 7 37 37 H 1.08995 * 109.47519 * 59.99582 * 10 9 7 38 38 H 0.96996 * 120.00308 * 359.97438 * 11 10 9 39 39 H 0.96998 * 120.00113 * 179.97438 * 15 14 12 40 40 H 1.07995 * 119.99936 * 359.97438 * 21 20 2 41 41 H 1.08000 * 119.99610 * 180.27818 * 22 21 20 42 42 H 1.07998 * 120.00233 * 179.83582 * 23 22 21 43 43 H 1.08009 * 119.99828 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00101 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 8 1.0110 1.0871 -2.3632 7 7 1.9845 -0.3917 -3.7002 8 6 2.7455 -1.6360 -3.8371 9 6 1.5965 0.3647 -4.8933 10 6 2.6939 1.3740 -5.2367 11 7 2.3056 2.1308 -6.4294 12 6 3.1378 3.0973 -6.9280 13 1 4.0801 3.3020 -6.4418 14 6 2.7701 3.8140 -8.0585 15 7 3.5696 4.7433 -8.5375 16 14 1.1405 3.4596 -8.9000 17 1 0.0828 4.3214 -8.3135 18 1 1.2614 3.7436 -10.3526 19 1 0.7817 2.0321 -8.7029 20 6 2.0324 -0.7104 1.2304 21 6 1.6938 -2.0323 1.4519 22 6 2.1582 -2.6852 2.5784 23 6 2.9537 -2.0137 3.4879 24 6 3.2879 -0.6904 3.2690 25 6 2.8271 -0.0386 2.1403 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7993 -1.2057 30 1 1.6055 -1.7197 -1.2953 31 1 2.0560 -2.4760 -3.9225 32 1 3.3680 -1.5847 -4.7304 33 1 3.3785 -1.7732 -2.9604 34 1 1.4590 -0.3210 -5.7294 35 1 0.6634 0.8942 -4.7003 36 1 2.8314 2.0597 -4.4005 37 1 3.6270 0.8447 -5.4295 38 1 1.4595 1.9468 -6.8664 39 1 3.3129 5.2439 -9.3277 40 1 1.0690 -2.5557 0.7434 41 1 1.8974 -3.7192 2.7492 42 1 3.3143 -2.5231 4.3693 43 1 3.9091 -0.1656 3.9798 44 1 3.0883 0.9952 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753257838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:29 Heat of formation + Delta-G solvation = -2.129897 kcal Electronic energy + Delta-G solvation = -22503.003460 eV Core-core repulsion = 19227.473802 eV Total energy + Delta-G solvation = -3275.529658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30679 -39.32924 -36.28231 -35.04017 -34.48747 -31.61441 -31.16261 -30.17862 -29.00070 -27.66570 -26.32435 -24.07783 -23.20588 -22.71275 -21.41956 -20.41857 -18.95560 -17.64251 -17.43503 -16.65899 -16.02601 -15.94759 -15.33435 -15.01629 -14.42035 -14.15135 -14.06351 -13.71438 -13.62999 -13.49195 -13.42111 -13.02563 -12.85500 -12.65991 -12.55509 -12.39978 -11.94108 -11.55751 -11.53663 -11.31351 -11.16319 -11.05273 -10.97062 -10.82850 -10.71651 -10.15841 -9.63187 -9.56884 -9.16786 -8.93901 -8.87990 -8.55263 -7.22854 -5.74881 -3.11024 1.10604 1.15279 2.70436 3.02956 3.38940 3.42840 3.47130 3.54513 4.33113 4.50490 4.61121 4.72722 4.75947 4.82981 4.88817 4.92226 5.04000 5.23358 5.26039 5.27121 5.31503 5.42882 5.45174 5.55672 5.56616 5.59352 5.65202 5.75657 5.77614 5.78624 5.89577 5.96729 6.01785 6.19001 6.26597 6.30465 6.44810 6.47851 6.65037 6.76023 6.82907 7.45024 8.00379 8.26846 8.43495 9.22051 9.94227 10.13590 11.43489 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031402 B = 0.002716 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.441487 B =10308.638167 C =10449.571176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 H 0.088 0.912 4 C -0.130 4.130 5 C 0.510 3.490 6 O -0.530 6.530 7 N -0.613 5.613 8 C 0.077 3.923 9 C 0.104 3.896 10 C 0.147 3.853 11 N -0.754 5.754 12 C -0.243 4.243 13 H 0.090 0.910 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.887 3.113 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.073 4.073 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.115 4.115 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.025 0.975 38 H 0.361 0.639 39 H 0.260 0.740 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 -19.340 22.619 29.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.057 4.057 3 H 0.106 0.894 4 C -0.170 4.170 5 C 0.298 3.702 6 O -0.406 6.406 7 N -0.347 5.347 8 C -0.066 4.066 9 C -0.019 4.019 10 C 0.019 3.981 11 N -0.400 5.400 12 C -0.373 4.373 13 H 0.107 0.893 14 C -0.192 4.192 15 N -0.582 5.582 16 Si 0.717 3.283 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.073 4.073 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.133 4.133 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.319 -18.643 22.642 29.517 hybrid contribution -0.911 -0.294 -0.731 1.205 sum -4.231 -18.938 21.911 29.268 Atomic orbital electron populations 1.21957 0.93630 1.01544 1.03405 1.19917 0.96817 0.99348 0.89590 0.89362 1.21766 1.02905 1.00001 0.92319 1.20625 0.79472 0.85687 0.84376 1.90701 1.39637 1.24224 1.86032 1.47813 1.55791 1.24760 1.06367 1.21825 0.95884 0.85553 1.03384 1.21715 0.99702 0.94686 0.85786 1.20884 0.94804 0.92386 0.90061 1.42563 1.22429 1.44139 1.30860 1.19033 1.00687 1.09595 1.07953 0.89262 1.24679 0.98070 0.98238 0.98230 1.69704 1.37107 1.26058 1.25360 0.86514 0.84890 0.77794 0.79125 1.20966 1.21692 1.20358 1.19943 0.97008 0.94187 0.96135 1.21016 1.00165 0.94396 0.97766 1.21135 0.98164 0.99814 0.94699 1.21137 0.99018 0.94948 0.99479 1.21160 0.99983 0.94957 0.97567 1.21151 0.97754 1.00100 0.94341 0.93267 0.92785 0.90071 0.88798 0.89006 0.92680 0.90524 0.91096 0.90667 0.89783 0.95102 0.95674 0.80675 0.93039 0.86155 0.86236 0.86333 0.86147 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.74 37.16 0.32 -1.25 16 2 C -0.04 -0.39 2.21 -91.77 -0.20 -0.59 16 3 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 4 C -0.13 -1.27 3.47 -27.88 -0.10 -1.36 16 5 C 0.51 7.06 7.39 -10.99 -0.08 6.98 16 6 O -0.53 -9.41 13.54 5.55 0.08 -9.33 16 7 N -0.61 -8.12 2.87 -181.57 -0.52 -8.64 16 8 C 0.08 0.69 10.24 59.85 0.61 1.30 16 9 C 0.10 1.68 5.52 -4.04 -0.02 1.66 16 10 C 0.15 3.01 6.58 -4.05 -0.03 2.99 16 11 N -0.75 -18.73 5.41 -59.91 -0.32 -19.05 16 12 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 13 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 14 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 15 N -0.93 -29.97 13.97 55.49 0.78 -29.20 16 16 Si 0.89 22.56 27.73 -169.99 -4.71 17.85 16 17 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 20 C -0.07 -0.68 4.78 -104.62 -0.50 -1.18 16 21 C -0.12 -0.96 8.76 -39.58 -0.35 -1.30 16 22 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 23 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -1.06 9.67 -39.59 -0.38 -1.44 16 26 H 0.05 0.45 7.37 -51.93 -0.38 0.06 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 29 H 0.09 0.82 7.40 -51.93 -0.38 0.43 16 30 H 0.09 0.71 7.55 -51.93 -0.39 0.31 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.07 0.50 6.44 -51.93 -0.33 0.17 16 34 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 35 H 0.08 1.49 7.42 -51.93 -0.39 1.10 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.36 8.62 5.53 -40.82 -0.23 8.40 16 39 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 40 H 0.12 0.83 7.16 -52.49 -0.38 0.46 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 44 H 0.12 1.03 7.95 -52.49 -0.42 0.61 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -34.91 357.48 -8.49 -43.39 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.00 Total: 5.13 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.17 Total: -5.53 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.07 Total: -56.89 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.91 -8.49 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753257838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.262 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds