Wall clock time and date at job start Tue Mar 31 2020 08:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 O 1.21284 * 119.99693 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00154 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00123 * 359.97438 * 7 5 4 9 9 C 1.46505 * 120.00007 * 179.97438 * 7 5 4 10 10 C 1.52997 * 109.47306 * 89.99619 * 9 7 5 11 11 N 1.46496 * 109.47326 * 180.02562 * 10 9 7 12 12 C 1.36940 * 119.99962 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00534 * 359.97438 * 12 11 10 14 14 C 1.38817 * 119.99691 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99943 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00033 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46971 * 90.00177 * 16 14 12 18 18 H 1.48507 * 109.46985 * 209.99850 * 16 14 12 19 19 H 1.48502 * 109.47281 * 330.00061 * 16 14 12 20 20 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 21 21 C 1.38245 * 119.99431 * 59.73158 * 20 2 1 22 22 C 1.38237 * 119.99269 * 179.78957 * 21 20 2 23 23 C 1.38234 * 120.00384 * 0.43420 * 22 21 20 24 24 C 1.38233 * 119.99643 * 359.81821 * 23 22 21 25 25 C 1.38228 * 120.00126 * 240.00037 * 20 2 1 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 30 30 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 31 31 H 1.09009 * 109.46915 * 90.00673 * 8 7 5 32 32 H 1.09000 * 109.47236 * 210.00124 * 8 7 5 33 33 H 1.09001 * 109.47562 * 330.01021 * 8 7 5 34 34 H 1.08998 * 109.46720 * 209.99621 * 9 7 5 35 35 H 1.09001 * 109.46877 * 329.99610 * 9 7 5 36 36 H 1.09006 * 109.46964 * 299.99911 * 10 9 7 37 37 H 1.08995 * 109.47519 * 59.99582 * 10 9 7 38 38 H 0.96996 * 120.00308 * 359.97438 * 11 10 9 39 39 H 0.96998 * 120.00113 * 179.97438 * 15 14 12 40 40 H 1.07995 * 119.99936 * 359.97438 * 21 20 2 41 41 H 1.08000 * 119.99610 * 180.27818 * 22 21 20 42 42 H 1.07998 * 120.00233 * 179.83582 * 23 22 21 43 43 H 1.08009 * 119.99828 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00101 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 8 1.0110 1.0871 -2.3632 7 7 1.9845 -0.3917 -3.7002 8 6 2.7455 -1.6360 -3.8371 9 6 1.5965 0.3647 -4.8933 10 6 2.6939 1.3740 -5.2367 11 7 2.3056 2.1308 -6.4294 12 6 3.1378 3.0973 -6.9280 13 1 4.0801 3.3020 -6.4418 14 6 2.7701 3.8140 -8.0585 15 7 3.5696 4.7433 -8.5375 16 14 1.1405 3.4596 -8.9000 17 1 0.0828 4.3214 -8.3135 18 1 1.2614 3.7436 -10.3526 19 1 0.7817 2.0321 -8.7029 20 6 2.0324 -0.7104 1.2304 21 6 1.6938 -2.0323 1.4519 22 6 2.1582 -2.6852 2.5784 23 6 2.9537 -2.0137 3.4879 24 6 3.2879 -0.6904 3.2690 25 6 2.8271 -0.0386 2.1403 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.1264 -0.7993 -1.2057 30 1 1.6055 -1.7197 -1.2953 31 1 2.0560 -2.4760 -3.9225 32 1 3.3680 -1.5847 -4.7304 33 1 3.3785 -1.7732 -2.9604 34 1 1.4590 -0.3210 -5.7294 35 1 0.6634 0.8942 -4.7003 36 1 2.8314 2.0597 -4.4005 37 1 3.6270 0.8447 -5.4295 38 1 1.4595 1.9468 -6.8664 39 1 3.3129 5.2439 -9.3277 40 1 1.0690 -2.5557 0.7434 41 1 1.8974 -3.7192 2.7492 42 1 3.3143 -2.5231 4.3693 43 1 3.9091 -0.1656 3.9798 44 1 3.0883 0.9952 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753257838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:28 Heat of formation + Delta-G solvation = -23.874459 kcal Electronic energy + Delta-G solvation = -22503.946375 eV Core-core repulsion = 19227.473802 eV Total energy + Delta-G solvation = -3276.472573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26446 -40.08449 -37.62711 -36.19126 -35.89093 -33.68303 -31.75094 -31.19031 -30.19313 -28.63749 -27.40441 -25.45358 -24.31780 -23.41969 -23.13117 -21.25876 -20.11423 -19.55770 -18.34149 -17.39842 -17.25755 -16.94712 -16.39214 -16.07502 -15.84394 -15.59965 -15.31609 -14.87659 -14.69123 -14.50264 -14.46436 -14.13276 -13.89198 -13.66501 -13.46202 -13.28010 -13.21181 -12.99007 -12.80407 -12.66086 -12.39733 -12.20146 -12.11754 -12.05734 -11.85208 -11.71499 -11.53660 -11.04370 -10.71771 -9.76353 -9.66562 -9.56563 -9.39267 -8.07501 -5.43529 0.49191 0.55670 1.35500 1.41318 1.47845 1.64926 2.00451 2.45495 2.93367 3.23357 3.47560 3.71501 3.78727 3.96371 4.06573 4.16806 4.20340 4.20560 4.24993 4.35187 4.36387 4.50485 4.52398 4.64276 4.65815 4.70101 4.75139 4.86579 4.95064 4.97995 5.03951 5.06442 5.17399 5.19737 5.26250 5.38046 5.52338 5.64870 5.68771 5.69009 5.79708 6.15419 6.17820 6.43344 7.00868 7.21861 7.74248 7.95801 9.13855 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031402 B = 0.002716 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.441487 B =10308.638167 C =10449.571176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.034 4.034 3 H 0.060 0.940 4 C -0.118 4.118 5 C 0.502 3.498 6 O -0.578 6.578 7 N -0.614 5.614 8 C 0.069 3.931 9 C 0.117 3.883 10 C 0.150 3.850 11 N -0.755 5.755 12 C -0.243 4.243 13 H 0.051 0.949 14 C -0.063 4.063 15 N -0.982 5.982 16 Si 0.961 3.039 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.244 1.244 20 C -0.082 4.082 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.135 4.135 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.001 0.999 37 H 0.032 0.968 38 H 0.369 0.631 39 H 0.260 0.740 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.134 0.866 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 -23.031 23.382 33.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.053 4.053 3 H 0.079 0.921 4 C -0.158 4.158 5 C 0.292 3.708 6 O -0.458 6.458 7 N -0.347 5.347 8 C -0.072 4.072 9 C -0.007 4.007 10 C 0.022 3.978 11 N -0.402 5.402 12 C -0.374 4.374 13 H 0.069 0.931 14 C -0.255 4.255 15 N -0.632 5.632 16 Si 0.787 3.213 17 H -0.207 1.207 18 H -0.216 1.216 19 H -0.169 1.169 20 C -0.082 4.082 21 C -0.137 4.137 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.153 4.153 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.142 0.858 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.020 0.980 37 H 0.050 0.950 38 H 0.202 0.798 39 H 0.069 0.931 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.424 -22.406 23.440 32.727 hybrid contribution -0.450 0.872 -0.855 1.302 sum -4.874 -21.534 22.584 31.584 Atomic orbital electron populations 1.21880 0.94006 1.02300 1.01821 1.19795 0.96475 0.98270 0.90764 0.92107 1.21774 1.03876 1.00495 0.89605 1.21410 0.78526 0.85306 0.85519 1.90688 1.41860 1.26510 1.86757 1.47934 1.55892 1.25635 1.05191 1.22146 0.96441 0.84133 1.04514 1.21394 0.96965 0.94360 0.87994 1.20955 0.96919 0.92458 0.87426 1.42514 1.22068 1.43644 1.31926 1.18979 0.99991 1.10617 1.07792 0.93089 1.25603 1.02606 0.98110 0.99190 1.69892 1.39682 1.27533 1.26121 0.85329 0.79207 0.79423 0.77353 1.20712 1.21597 1.16850 1.19844 0.97791 0.94862 0.95731 1.21213 1.00195 0.93804 0.98458 1.21463 0.97525 1.00914 0.94172 1.21467 0.98605 0.94715 1.00198 1.21387 1.00139 0.95573 0.97440 1.21276 0.98593 1.00253 0.95202 0.91240 0.93095 0.92861 0.87282 0.85846 0.89953 0.90605 0.88851 0.88061 0.91517 0.98047 0.95022 0.79788 0.93087 0.84511 0.83920 0.84269 0.84837 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.74 71.98 0.63 -2.38 16 2 C -0.03 -0.69 2.21 -11.54 -0.03 -0.72 16 3 H 0.06 1.54 7.69 -2.39 -0.02 1.52 16 4 C -0.12 -2.07 3.47 29.85 0.10 -1.97 16 5 C 0.50 13.54 7.39 87.66 0.65 14.19 16 6 O -0.58 -21.24 13.54 -3.04 -0.04 -21.28 16 7 N -0.61 -15.15 2.87 -846.75 -2.43 -17.58 16 8 C 0.07 1.00 10.24 127.77 1.31 2.31 16 9 C 0.12 3.65 5.52 86.38 0.48 4.12 16 10 C 0.15 6.18 6.58 86.38 0.57 6.75 16 11 N -0.75 -37.41 5.41 -343.46 -1.86 -39.27 16 12 C -0.24 -14.63 10.47 84.03 0.88 -13.75 16 13 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 14 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 15 N -0.98 -64.63 13.97 21.65 0.30 -64.33 16 16 Si 0.96 46.35 27.73 68.60 1.90 48.25 16 17 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 18 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.24 -10.37 6.52 99.48 0.65 -9.72 16 20 C -0.08 -1.43 4.78 -19.87 -0.09 -1.53 16 21 C -0.12 -1.64 8.76 22.27 0.20 -1.44 16 22 C -0.12 -1.49 10.05 22.27 0.22 -1.26 16 23 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 24 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 25 C -0.14 -2.42 9.67 22.27 0.22 -2.21 16 26 H 0.07 1.14 7.37 -2.39 -0.02 1.12 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.44 5.95 -2.39 -0.01 1.42 16 29 H 0.11 1.62 7.40 -2.39 -0.02 1.60 16 30 H 0.12 1.41 7.55 -2.39 -0.02 1.39 16 31 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.08 1.15 8.07 -2.39 -0.02 1.13 16 33 H 0.09 0.95 6.44 -2.39 -0.02 0.93 16 34 H 0.10 2.65 8.07 -2.39 -0.02 2.63 16 35 H 0.07 2.34 7.42 -2.39 -0.02 2.32 16 36 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.37 17.00 5.53 -92.71 -0.51 16.49 16 39 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 40 H 0.14 1.36 7.16 -2.91 -0.02 1.34 16 41 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 42 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 44 H 0.12 2.09 7.95 -2.91 -0.02 2.07 16 Total: -1.00 -79.10 357.48 4.32 -74.77 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.41 Total: 23.83 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 6.04 Total: -4.40 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -3.99 Total: -121.17 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.28 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.90 Total: 48.25 kcal Total: -79.10 4.32 -74.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753257838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.898 kcal (2) G-P(sol) polarization free energy of solvation -79.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds