Wall clock time and date at job start Tue Mar 31 2020 08:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47268 * 2 1 4 4 C 1.53003 * 109.47111 * 240.00502 * 2 1 3 5 5 N 1.46499 * 109.47225 * 184.99885 * 4 2 1 6 6 C 1.36937 * 119.99942 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00447 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00147 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99636 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00017 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47548 * 89.99831 * 10 8 6 12 12 H 1.48501 * 109.46904 * 209.99926 * 10 8 6 13 13 H 1.48497 * 109.47094 * 329.99344 * 10 8 6 14 14 N 1.46494 * 109.47763 * 120.00485 * 2 1 3 15 15 C 1.34781 * 120.00022 * 275.00007 * 14 2 1 16 16 O 1.21286 * 119.99821 * 0.02562 * 15 14 2 17 17 C 1.50697 * 120.00242 * 179.97438 * 15 14 2 18 18 C 1.53001 * 109.46601 * 64.44620 * 17 15 14 19 19 C 1.53000 * 109.47417 * 304.44206 * 17 15 14 20 20 C 1.50703 * 109.46872 * 184.43974 * 17 15 14 21 21 C 1.38239 * 120.00101 * 293.80178 * 20 17 15 22 22 C 1.38227 * 119.99716 * 180.32524 * 21 20 17 23 23 C 1.38240 * 120.00513 * 359.95278 * 22 21 20 24 24 C 1.38237 * 119.99592 * 0.02562 * 23 22 21 25 25 C 1.38234 * 120.00157 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46890 * 299.99527 * 1 2 3 28 28 H 1.08995 * 109.47356 * 59.99907 * 1 2 3 29 29 H 1.09008 * 109.46993 * 304.99746 * 4 2 1 30 30 H 1.08999 * 109.47653 * 64.99512 * 4 2 1 31 31 H 0.96998 * 120.00270 * 359.97438 * 5 4 2 32 32 H 0.97000 * 119.99805 * 179.97438 * 9 8 6 33 33 H 0.97002 * 120.00621 * 94.99931 * 14 2 1 34 34 H 1.09007 * 109.46869 * 180.02562 * 18 17 15 35 35 H 1.08996 * 109.47199 * 299.99191 * 18 17 15 36 36 H 1.08997 * 109.47824 * 59.99712 * 18 17 15 37 37 H 1.09003 * 109.46900 * 300.00178 * 19 17 15 38 38 H 1.09001 * 109.46992 * 59.99877 * 19 17 15 39 39 H 1.08996 * 109.46695 * 179.97438 * 19 17 15 40 40 H 1.07998 * 120.00112 * 0.27524 * 21 20 17 41 41 H 1.08003 * 120.00044 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.00220 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.99577 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00417 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1837 -1.4387 -2.2069 7 1 3.6466 -1.8445 -3.0515 8 6 5.5672 -1.5378 -2.1517 9 7 6.2219 -1.0428 -1.1227 10 14 6.4999 -2.3726 -3.5383 11 1 6.8615 -1.3657 -4.5681 12 1 7.7357 -2.9950 -2.9991 13 1 5.6440 -3.4207 -4.1498 14 7 2.0185 -0.6907 1.1960 15 6 2.1472 -0.0184 2.3571 16 8 1.8583 1.1583 2.4117 17 6 2.6492 -0.7289 3.5876 18 6 4.0925 -1.1832 3.3609 19 6 1.7685 -1.9484 3.8673 20 6 2.5970 0.2093 4.7658 21 6 3.4154 1.3229 4.7993 22 6 3.3723 2.1798 5.8831 23 6 2.5103 1.9237 6.9330 24 6 1.6916 0.8103 6.8992 25 6 1.7354 -0.0472 5.8159 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6054 -1.7198 -1.2953 30 1 1.7516 -0.1583 -2.1371 31 1 3.9825 -0.4621 -0.4321 32 1 7.1886 -1.1124 -1.0839 33 1 2.2492 -1.6318 1.1525 34 1 4.4555 -1.6976 4.2508 35 1 4.1302 -1.8618 2.5088 36 1 4.7199 -0.3145 3.1616 37 1 0.7403 -1.6246 4.0287 38 1 1.8062 -2.6270 3.0151 39 1 2.1319 -2.4625 4.7570 40 1 4.0889 1.5230 3.9791 41 1 4.0120 3.0496 5.9095 42 1 2.4764 2.5935 7.7796 43 1 1.0184 0.6100 7.7197 44 1 1.0962 -0.9172 5.7897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754251659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:18 Heat of formation + Delta-G solvation = -11.427225 kcal Electronic energy + Delta-G solvation = -23633.059598 eV Core-core repulsion = 20357.126778 eV Total energy + Delta-G solvation = -3275.932820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.46365 -38.64937 -36.20349 -35.10020 -33.61215 -31.28044 -30.96375 -30.04711 -29.21451 -27.35555 -25.68965 -24.03099 -22.78807 -22.23553 -21.90425 -20.34867 -19.26782 -17.39108 -16.95028 -16.47130 -15.90653 -15.05311 -14.83714 -14.65880 -14.45839 -14.00256 -13.83918 -13.59916 -13.39899 -13.28657 -12.73834 -12.46490 -12.32661 -12.25012 -12.07306 -11.99231 -11.98775 -11.71126 -11.56820 -11.43611 -10.93387 -10.83524 -10.76737 -10.61238 -10.44139 -10.06124 -9.75798 -9.35353 -8.93276 -8.79405 -8.63337 -8.60291 -6.97652 -5.80103 -3.09617 1.43195 1.52776 3.00403 3.40880 3.46318 3.47757 3.50652 3.97913 4.54586 4.55559 4.78413 4.95922 5.05206 5.10662 5.13740 5.23292 5.32447 5.51447 5.51896 5.52990 5.59075 5.66645 5.69351 5.76381 5.87565 5.92210 6.01863 6.03659 6.10805 6.13972 6.14469 6.20560 6.37424 6.40964 6.49665 6.55121 6.61587 6.71005 6.74711 6.99247 7.09442 7.66301 7.93173 8.37916 8.61522 9.49919 10.05889 10.41749 11.42174 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.004082 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.264006 B = 6858.561987 C = 7537.217284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 H 0.085 0.915 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.243 4.243 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 N -0.708 5.708 15 C 0.526 3.474 16 O -0.541 6.541 17 C -0.044 4.044 18 C -0.138 4.138 19 C -0.142 4.142 20 C -0.053 4.053 21 C -0.085 4.085 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.118 4.118 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.386 0.614 32 H 0.255 0.745 33 H 0.403 0.597 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 0.067 14.610 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 H 0.103 0.897 4 C 0.016 3.984 5 N -0.376 5.376 6 C -0.374 4.374 7 H 0.088 0.912 8 C -0.207 4.207 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.359 5.359 15 C 0.311 3.689 16 O -0.418 6.418 17 C -0.047 4.047 18 C -0.195 4.195 19 C -0.200 4.200 20 C -0.054 4.054 21 C -0.103 4.103 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.136 4.136 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.238 0.762 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.011 0.822 14.467 17.612 hybrid contribution 0.883 -0.699 -0.640 1.296 sum -9.127 0.123 13.827 16.568 Atomic orbital electron populations 1.22092 0.95630 1.01764 1.02059 1.21225 0.93265 0.97991 0.84675 0.89650 1.20981 0.86873 0.96916 0.93608 1.42351 0.99720 1.70267 1.25277 1.19218 0.89441 1.29500 0.99249 0.91188 1.24732 0.96403 1.01541 0.98035 1.69663 1.07215 1.50759 1.30209 0.86202 0.79503 0.79005 0.81526 1.21735 1.21781 1.20785 1.45964 1.66491 1.14349 1.09107 1.20240 0.77314 0.87083 0.84222 1.90680 1.50192 1.15836 1.85050 1.19737 0.98306 0.95013 0.91621 1.21880 0.92411 1.02496 1.02753 1.21951 0.99214 0.96022 1.02788 1.19347 0.96455 0.95417 0.94144 1.21002 0.98265 0.93572 0.97475 1.21106 0.99333 0.99447 0.94150 1.21092 0.96923 0.97689 0.98666 1.21036 0.99707 0.95375 0.98359 1.21107 0.98733 0.99953 0.93846 0.92636 0.92505 0.91756 0.95843 0.94961 0.77972 0.93505 0.76220 0.91634 0.90751 0.91480 0.91918 0.91514 0.91169 0.86070 0.86278 0.86534 0.86446 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 2 C 0.13 2.26 2.73 -67.93 -0.19 2.07 16 3 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.79 5.82 -4.04 -0.02 2.77 16 5 N -0.73 -17.88 5.43 -59.90 -0.33 -18.21 16 6 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 7 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 8 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 9 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 10 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 N -0.71 -11.39 4.34 -53.81 -0.23 -11.62 16 15 C 0.53 8.75 6.37 -10.98 -0.07 8.68 16 16 O -0.54 -10.74 15.00 5.55 0.08 -10.66 16 17 C -0.04 -0.59 0.72 -156.81 -0.11 -0.71 16 18 C -0.14 -1.91 8.16 37.16 0.30 -1.61 16 19 C -0.14 -1.52 7.01 37.16 0.26 -1.26 16 20 C -0.05 -0.75 4.32 -104.62 -0.45 -1.20 16 21 C -0.09 -1.25 8.16 -39.58 -0.32 -1.57 16 22 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 23 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 24 C -0.13 -1.43 10.05 -39.58 -0.40 -1.82 16 25 C -0.12 -1.45 8.99 -39.58 -0.36 -1.81 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.39 10.05 7.33 -40.82 -0.30 9.75 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.40 6.14 7.49 -40.82 -0.31 5.84 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.09 7.88 -51.93 -0.41 0.68 16 36 H 0.07 1.03 7.07 -51.93 -0.37 0.66 16 37 H 0.06 0.65 7.23 -51.93 -0.38 0.27 16 38 H 0.07 0.67 7.33 -51.93 -0.38 0.29 16 39 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 40 H 0.12 1.88 7.22 -52.49 -0.38 1.50 16 41 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.26 5.91 -52.49 -0.31 0.95 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -31.71 358.11 -8.40 -40.11 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -6.98 Total: 13.95 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.05 Total: -9.25 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.17 Total: -56.53 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.71 -8.40 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754251659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.684 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds