Wall clock time and date at job start Tue Mar 31 2020 08:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47268 * 2 1 4 4 C 1.53003 * 109.47111 * 240.00502 * 2 1 3 5 5 N 1.46499 * 109.47225 * 184.99885 * 4 2 1 6 6 C 1.36937 * 119.99942 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00447 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00147 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99636 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00017 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47548 * 89.99831 * 10 8 6 12 12 H 1.48501 * 109.46904 * 209.99926 * 10 8 6 13 13 H 1.48497 * 109.47094 * 329.99344 * 10 8 6 14 14 N 1.46494 * 109.47763 * 120.00485 * 2 1 3 15 15 C 1.34781 * 120.00022 * 275.00007 * 14 2 1 16 16 O 1.21286 * 119.99821 * 0.02562 * 15 14 2 17 17 C 1.50697 * 120.00242 * 179.97438 * 15 14 2 18 18 C 1.53001 * 109.46601 * 64.44620 * 17 15 14 19 19 C 1.53000 * 109.47417 * 304.44206 * 17 15 14 20 20 C 1.50703 * 109.46872 * 184.43974 * 17 15 14 21 21 C 1.38239 * 120.00101 * 293.80178 * 20 17 15 22 22 C 1.38227 * 119.99716 * 180.32524 * 21 20 17 23 23 C 1.38240 * 120.00513 * 359.95278 * 22 21 20 24 24 C 1.38237 * 119.99592 * 0.02562 * 23 22 21 25 25 C 1.38234 * 120.00157 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46890 * 299.99527 * 1 2 3 28 28 H 1.08995 * 109.47356 * 59.99907 * 1 2 3 29 29 H 1.09008 * 109.46993 * 304.99746 * 4 2 1 30 30 H 1.08999 * 109.47653 * 64.99512 * 4 2 1 31 31 H 0.96998 * 120.00270 * 359.97438 * 5 4 2 32 32 H 0.97000 * 119.99805 * 179.97438 * 9 8 6 33 33 H 0.97002 * 120.00621 * 94.99931 * 14 2 1 34 34 H 1.09007 * 109.46869 * 180.02562 * 18 17 15 35 35 H 1.08996 * 109.47199 * 299.99191 * 18 17 15 36 36 H 1.08997 * 109.47824 * 59.99712 * 18 17 15 37 37 H 1.09003 * 109.46900 * 300.00178 * 19 17 15 38 38 H 1.09001 * 109.46992 * 59.99877 * 19 17 15 39 39 H 1.08996 * 109.46695 * 179.97438 * 19 17 15 40 40 H 1.07998 * 120.00112 * 0.27524 * 21 20 17 41 41 H 1.08003 * 120.00044 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.00220 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.99577 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00417 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1837 -1.4387 -2.2069 7 1 3.6466 -1.8445 -3.0515 8 6 5.5672 -1.5378 -2.1517 9 7 6.2219 -1.0428 -1.1227 10 14 6.4999 -2.3726 -3.5383 11 1 6.8615 -1.3657 -4.5681 12 1 7.7357 -2.9950 -2.9991 13 1 5.6440 -3.4207 -4.1498 14 7 2.0185 -0.6907 1.1960 15 6 2.1472 -0.0184 2.3571 16 8 1.8583 1.1583 2.4117 17 6 2.6492 -0.7289 3.5876 18 6 4.0925 -1.1832 3.3609 19 6 1.7685 -1.9484 3.8673 20 6 2.5970 0.2093 4.7658 21 6 3.4154 1.3229 4.7993 22 6 3.3723 2.1798 5.8831 23 6 2.5103 1.9237 6.9330 24 6 1.6916 0.8103 6.8992 25 6 1.7354 -0.0472 5.8159 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6054 -1.7198 -1.2953 30 1 1.7516 -0.1583 -2.1371 31 1 3.9825 -0.4621 -0.4321 32 1 7.1886 -1.1124 -1.0839 33 1 2.2492 -1.6318 1.1525 34 1 4.4555 -1.6976 4.2508 35 1 4.1302 -1.8618 2.5088 36 1 4.7199 -0.3145 3.1616 37 1 0.7403 -1.6246 4.0287 38 1 1.8062 -2.6270 3.0151 39 1 2.1319 -2.4625 4.7570 40 1 4.0889 1.5230 3.9791 41 1 4.0120 3.0496 5.9095 42 1 2.4764 2.5935 7.7796 43 1 1.0184 0.6100 7.7197 44 1 1.0962 -0.9172 5.7897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754251659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:12 Heat of formation + Delta-G solvation = -30.687173 kcal Electronic energy + Delta-G solvation = -23633.894772 eV Core-core repulsion = 20357.126778 eV Total energy + Delta-G solvation = -3276.767994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -41.64390 -39.77212 -37.69699 -36.24868 -35.43146 -32.97052 -31.91088 -31.55921 -30.28372 -28.33691 -27.42018 -25.21017 -24.49056 -23.35402 -23.02226 -21.71711 -20.48264 -19.20546 -18.17911 -17.70011 -17.21443 -16.68074 -16.12779 -15.83753 -15.64938 -15.42349 -15.16725 -14.99830 -14.89834 -14.33149 -14.02812 -13.77593 -13.66189 -13.52040 -13.25646 -13.17685 -13.05352 -13.03171 -12.79995 -12.61929 -12.61073 -12.43652 -12.15523 -11.91633 -11.74935 -11.66117 -11.59515 -10.98550 -10.64412 -10.00979 -9.74691 -9.59493 -9.00767 -7.93594 -5.23257 0.46763 0.56481 1.48509 1.49785 1.58040 1.69039 2.26771 2.56493 2.97213 3.40661 3.51361 3.71419 3.83999 3.92342 4.05267 4.10077 4.19363 4.23228 4.30136 4.30813 4.51830 4.61230 4.65895 4.73489 4.79204 4.82481 4.85047 4.86031 4.90885 4.93505 5.11110 5.12655 5.19170 5.23507 5.24296 5.30410 5.51196 5.60414 5.63147 5.66002 5.76073 6.16569 6.26729 6.62064 7.30304 7.34357 8.07514 8.31867 9.29214 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.004082 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.264006 B = 6858.561987 C = 7537.217284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.139 3.861 3 H 0.054 0.946 4 C 0.146 3.854 5 N -0.743 5.743 6 C -0.245 4.245 7 H 0.079 0.921 8 C -0.071 4.071 9 N -0.966 5.966 10 Si 0.971 3.029 11 H -0.292 1.292 12 H -0.297 1.297 13 H -0.267 1.267 14 N -0.704 5.704 15 C 0.522 3.478 16 O -0.578 6.578 17 C -0.037 4.037 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.071 4.071 21 C -0.114 4.114 22 C -0.135 4.135 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.123 4.123 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.374 0.626 32 H 0.250 0.750 33 H 0.408 0.592 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 -1.394 15.568 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.034 3.966 3 H 0.072 0.928 4 C 0.019 3.981 5 N -0.386 5.386 6 C -0.377 4.377 7 H 0.096 0.904 8 C -0.263 4.263 9 N -0.616 5.616 10 Si 0.801 3.199 11 H -0.219 1.219 12 H -0.223 1.223 13 H -0.192 1.192 14 N -0.355 5.355 15 C 0.309 3.691 16 O -0.458 6.458 17 C -0.040 4.040 18 C -0.189 4.189 19 C -0.196 4.196 20 C -0.072 4.072 21 C -0.132 4.132 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.140 4.140 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.206 0.794 32 H 0.059 0.941 33 H 0.244 0.756 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.147 0.853 42 H 0.163 0.837 43 H 0.168 0.832 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.924 -0.664 15.402 19.489 hybrid contribution 1.418 -0.176 -0.925 1.703 sum -10.505 -0.841 14.476 17.906 Atomic orbital electron populations 1.21983 0.92687 1.03179 1.02446 1.21081 0.95361 0.95969 0.84175 0.92779 1.21123 0.84126 0.98009 0.94820 1.42532 1.01797 1.69967 1.24355 1.19629 0.89899 1.28472 0.99698 0.90356 1.25519 0.97455 1.02965 1.00389 1.69828 1.06957 1.52648 1.32213 0.85172 0.78000 0.78128 0.78623 1.21929 1.22325 1.19161 1.45940 1.66231 1.14471 1.08813 1.20848 0.76471 0.86738 0.85082 1.90652 1.51914 1.17517 1.85715 1.19715 0.98185 0.96010 0.90101 1.21814 0.92688 1.01211 1.03219 1.21975 0.98911 0.94616 1.04079 1.19472 0.97301 0.95452 0.94962 1.20998 0.99180 0.95232 0.97804 1.21333 1.00172 0.99596 0.94230 1.21464 0.95960 0.98215 0.98769 1.21476 0.99505 0.94582 0.98757 1.21420 0.98269 1.00947 0.93380 0.90626 0.93167 0.90322 0.94024 0.94620 0.79376 0.94145 0.75621 0.89509 0.91815 0.94163 0.91148 0.90891 0.89001 0.88745 0.85266 0.83704 0.83194 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.48 71.98 0.68 -3.13 16 2 C 0.14 4.74 2.73 44.99 0.12 4.86 16 3 H 0.05 2.19 7.58 -2.38 -0.02 2.17 16 4 C 0.15 5.55 5.82 86.38 0.50 6.06 16 5 N -0.74 -36.71 5.43 -343.43 -1.87 -38.57 16 6 C -0.25 -13.31 9.99 84.03 0.84 -12.47 16 7 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 8 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 9 N -0.97 -58.33 13.06 21.65 0.28 -58.05 16 10 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 N -0.70 -22.84 4.34 -442.53 -1.92 -24.76 16 15 C 0.52 17.83 6.37 87.66 0.56 18.39 16 16 O -0.58 -24.00 15.00 -3.05 -0.05 -24.05 16 17 C -0.04 -1.01 0.72 -53.67 -0.04 -1.05 16 18 C -0.13 -3.79 8.16 71.98 0.59 -3.20 16 19 C -0.14 -2.68 7.01 71.98 0.50 -2.18 16 20 C -0.07 -2.00 4.32 -19.86 -0.09 -2.08 16 21 C -0.11 -3.51 8.16 22.27 0.18 -3.33 16 22 C -0.14 -3.48 10.05 22.27 0.22 -3.26 16 23 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 24 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 25 C -0.12 -2.74 8.99 22.27 0.20 -2.54 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.37 20.12 7.33 -92.71 -0.68 19.44 16 32 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.41 12.35 7.49 -92.71 -0.69 11.66 16 34 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.06 1.93 7.88 -2.39 -0.02 1.91 16 36 H 0.04 1.34 7.07 -2.39 -0.02 1.32 16 37 H 0.07 1.27 7.23 -2.39 -0.02 1.25 16 38 H 0.07 1.32 7.33 -2.39 -0.02 1.30 16 39 H 0.09 1.40 7.79 -2.39 -0.02 1.38 16 40 H 0.09 3.28 7.22 -2.91 -0.02 3.26 16 41 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.15 2.49 5.91 -2.91 -0.02 2.48 16 Total: -1.00 -69.78 358.11 3.29 -66.49 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -0.38 Total: 43.63 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.19 Total: -12.11 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -3.50 Total: -121.38 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.78 3.29 -66.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754251659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.805 kcal (2) G-P(sol) polarization free energy of solvation -69.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds