Wall clock time and date at job start Tue Mar 31 2020 07:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47109 * 2 1 4 4 C 1.53002 * 109.46898 * 240.00304 * 2 1 3 5 5 N 1.46501 * 109.47180 * 184.99993 * 4 2 1 6 6 C 1.36936 * 120.00457 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99797 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00048 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00441 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99818 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46964 * 60.00162 * 10 8 6 12 12 H 1.48503 * 109.47129 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47020 * 300.00076 * 10 8 6 14 14 N 1.46494 * 109.47330 * 120.00017 * 2 1 3 15 15 C 1.34773 * 120.00310 * 274.99993 * 14 2 1 16 16 O 1.21285 * 119.99900 * 0.02562 * 15 14 2 17 17 C 1.50703 * 120.00306 * 179.97438 * 15 14 2 18 18 H 1.08998 * 109.47207 * 300.00428 * 17 15 14 19 19 C 1.52999 * 109.46885 * 59.99930 * 17 15 14 20 20 C 1.53001 * 109.46885 * 179.97438 * 17 15 14 21 21 C 1.50706 * 109.46589 * 174.99869 * 20 17 15 22 22 C 1.38237 * 119.99744 * 90.00605 * 21 20 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 270.01815 * 21 20 17 27 27 H 1.09004 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46861 * 299.99811 * 1 2 3 29 29 H 1.09001 * 109.47222 * 60.00165 * 1 2 3 30 30 H 1.08998 * 109.47150 * 304.99321 * 4 2 1 31 31 H 1.08992 * 109.47306 * 65.00157 * 4 2 1 32 32 H 0.97005 * 119.99898 * 359.97438 * 5 4 2 33 33 H 0.96996 * 120.00100 * 179.97438 * 9 8 6 34 34 H 0.97007 * 119.99975 * 95.00264 * 14 2 1 35 35 H 1.09006 * 109.47125 * 60.00280 * 19 17 15 36 36 H 1.09001 * 109.46806 * 179.97438 * 19 17 15 37 37 H 1.08998 * 109.47649 * 300.00150 * 19 17 15 38 38 H 1.08998 * 109.47218 * 55.00615 * 20 17 15 39 39 H 1.08993 * 109.47154 * 295.00048 * 20 17 15 40 40 H 1.08005 * 120.00088 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07998 * 119.99975 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1837 -1.4388 -2.2069 7 1 3.6466 -1.8446 -3.0513 8 6 5.5672 -1.5379 -2.1515 9 7 6.2218 -1.0438 -1.1221 10 14 6.5000 -2.3727 -3.5381 11 1 6.2425 -1.6531 -4.8114 12 1 7.9547 -2.3487 -3.2408 13 1 6.0441 -3.7804 -3.6641 14 7 2.0183 -0.6906 1.1961 15 6 2.1471 -0.0183 2.3571 16 8 1.8582 1.1584 2.4117 17 6 2.6489 -0.7289 3.5877 18 1 1.9761 -1.5507 3.8325 19 6 4.0513 -1.2798 3.3221 20 6 2.7011 0.2545 4.7587 21 6 3.0848 -0.4820 6.0163 22 6 4.4167 -0.6084 6.3642 23 6 4.7686 -1.2845 7.5174 24 6 3.7887 -1.8332 8.3233 25 6 2.4571 -1.7109 7.9729 26 6 2.1049 -1.0314 6.8218 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -1.7198 -1.2952 31 1 1.7516 -0.1583 -2.1370 32 1 3.9824 -0.4622 -0.4320 33 1 7.1885 -1.1134 -1.0833 34 1 2.2491 -1.6318 1.1525 35 1 4.7243 -0.4580 3.0773 36 1 4.4145 -1.7934 4.2124 37 1 4.0146 -1.9802 2.4877 38 1 1.7216 0.7139 4.8912 39 1 3.4402 1.0281 4.5508 40 1 5.1823 -0.1797 5.7345 41 1 5.8092 -1.3836 7.7890 42 1 4.0637 -2.3610 9.2246 43 1 1.6917 -2.1434 8.6003 44 1 1.0644 -0.9332 6.5497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754254615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:45 Heat of formation + Delta-G solvation = -21.679514 kcal Electronic energy + Delta-G solvation = -22903.311586 eV Core-core repulsion = 19626.934193 eV Total energy + Delta-G solvation = -3276.377393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.99709 -39.09534 -36.29648 -34.78034 -33.62448 -31.64203 -31.00249 -30.56888 -29.62311 -26.64775 -25.69492 -23.90027 -22.65256 -22.51871 -21.34447 -20.32042 -19.57811 -17.33460 -16.98776 -16.49186 -15.89601 -15.45531 -15.13157 -14.83194 -14.58308 -14.09750 -13.69258 -13.67690 -13.44970 -13.19596 -12.94426 -12.76203 -12.40972 -12.27233 -12.22467 -12.00358 -11.91435 -11.57881 -11.25313 -11.07382 -10.96109 -10.90645 -10.83181 -10.80656 -10.45717 -10.08135 -9.74852 -9.39900 -8.98762 -8.92251 -8.74081 -8.63419 -6.96978 -5.79120 -3.08773 1.26625 1.31478 3.00137 3.41802 3.46613 3.47439 3.51935 3.75350 4.56068 4.70175 4.76668 4.90571 4.95508 5.02945 5.11198 5.18839 5.31347 5.42989 5.44010 5.48546 5.53385 5.58043 5.67655 5.78809 5.85499 5.98478 5.99709 6.02861 6.05389 6.11404 6.20125 6.24594 6.38509 6.40735 6.42402 6.44696 6.50676 6.61630 6.71704 6.92737 6.99550 7.66421 7.93283 8.38815 8.61084 9.50688 10.06746 10.42579 11.43021 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.003719 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.449430 B = 7527.144426 C = 8913.922070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.086 0.914 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.244 4.244 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.709 5.709 15 C 0.519 3.481 16 O -0.551 6.551 17 C -0.102 4.102 18 H 0.093 0.907 19 C -0.147 4.147 20 C -0.062 4.062 21 C -0.074 4.074 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.119 4.119 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.403 0.597 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -1.782 16.533 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.104 0.896 4 C 0.016 3.984 5 N -0.376 5.376 6 C -0.375 4.375 7 H 0.088 0.912 8 C -0.207 4.207 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 N -0.360 5.360 15 C 0.305 3.695 16 O -0.430 6.430 17 C -0.123 4.123 18 H 0.111 0.889 19 C -0.204 4.204 20 C -0.100 4.100 21 C -0.074 4.074 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.137 4.137 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.238 0.762 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.712 -1.020 16.391 18.590 hybrid contribution 0.894 -0.884 -0.597 1.392 sum -7.818 -1.904 15.793 17.725 Atomic orbital electron populations 1.22094 0.95637 1.01762 1.02057 1.21224 0.93253 0.98010 0.84760 0.89632 1.20980 0.86887 0.96912 0.93628 1.42345 0.99714 1.70259 1.25290 1.19170 0.89437 1.29608 0.99282 0.91249 1.24733 0.96404 1.01514 0.98046 1.69652 1.07279 1.50680 1.30224 0.86277 0.78994 0.79244 0.81685 1.21290 1.21691 1.21289 1.45999 1.66339 1.14399 1.09272 1.20523 0.77058 0.87177 0.84708 1.90657 1.50916 1.16045 1.85337 1.21242 0.99492 0.98767 0.92835 0.88939 1.21855 0.94200 1.01930 1.02424 1.20423 1.03385 0.96496 0.89710 1.19944 0.93363 0.97894 0.96187 1.21173 0.95870 0.99198 0.96823 1.21163 0.99371 0.98218 0.95028 1.21117 0.93183 1.00527 0.99861 1.21114 0.96250 0.99432 0.97130 1.21076 0.99197 0.98406 0.94974 0.92650 0.92496 0.91749 0.95862 0.94975 0.77956 0.93458 0.76170 0.91604 0.91610 0.91361 0.90266 0.90129 0.85769 0.86180 0.86428 0.86337 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 2 C 0.13 2.24 2.73 -67.93 -0.19 2.06 16 3 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.80 5.82 -4.04 -0.02 2.78 16 5 N -0.73 -18.00 5.43 -59.91 -0.33 -18.32 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 8 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 9 N -0.93 -27.55 13.06 55.49 0.72 -26.82 16 10 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 N -0.71 -11.38 4.41 -53.81 -0.24 -11.62 16 15 C 0.52 8.42 7.12 -10.99 -0.08 8.35 16 16 O -0.55 -10.62 15.58 5.55 0.09 -10.53 16 17 C -0.10 -1.33 2.72 -91.77 -0.25 -1.58 16 18 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 19 C -0.15 -2.00 8.66 37.16 0.32 -1.68 16 20 C -0.06 -0.78 4.19 -27.88 -0.12 -0.90 16 21 C -0.07 -0.84 4.71 -104.62 -0.49 -1.33 16 22 C -0.11 -1.24 7.96 -39.58 -0.32 -1.56 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 25 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 26 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.39 10.12 7.33 -40.82 -0.30 9.82 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 34 H 0.40 6.18 8.02 -40.82 -0.33 5.85 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.80 6.26 -51.93 -0.33 0.48 16 37 H 0.07 1.00 7.56 -51.93 -0.39 0.60 16 38 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 39 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 40 H 0.12 1.31 8.04 -52.48 -0.42 0.89 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -31.40 364.23 -9.08 -40.49 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -7.19 Total: 13.51 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.61 Total: -9.25 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.16 Total: -56.77 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.40 -9.08 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754254615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.807 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds