Wall clock time and date at job start Tue Mar 31 2020 07:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47109 * 2 1 4 4 C 1.53002 * 109.46898 * 240.00304 * 2 1 3 5 5 N 1.46501 * 109.47180 * 184.99993 * 4 2 1 6 6 C 1.36936 * 120.00457 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99797 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00048 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00441 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99818 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46964 * 60.00162 * 10 8 6 12 12 H 1.48503 * 109.47129 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47020 * 300.00076 * 10 8 6 14 14 N 1.46494 * 109.47330 * 120.00017 * 2 1 3 15 15 C 1.34773 * 120.00310 * 274.99993 * 14 2 1 16 16 O 1.21285 * 119.99900 * 0.02562 * 15 14 2 17 17 C 1.50703 * 120.00306 * 179.97438 * 15 14 2 18 18 H 1.08998 * 109.47207 * 300.00428 * 17 15 14 19 19 C 1.52999 * 109.46885 * 59.99930 * 17 15 14 20 20 C 1.53001 * 109.46885 * 179.97438 * 17 15 14 21 21 C 1.50706 * 109.46589 * 174.99869 * 20 17 15 22 22 C 1.38237 * 119.99744 * 90.00605 * 21 20 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 270.01815 * 21 20 17 27 27 H 1.09004 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46861 * 299.99811 * 1 2 3 29 29 H 1.09001 * 109.47222 * 60.00165 * 1 2 3 30 30 H 1.08998 * 109.47150 * 304.99321 * 4 2 1 31 31 H 1.08992 * 109.47306 * 65.00157 * 4 2 1 32 32 H 0.97005 * 119.99898 * 359.97438 * 5 4 2 33 33 H 0.96996 * 120.00100 * 179.97438 * 9 8 6 34 34 H 0.97007 * 119.99975 * 95.00264 * 14 2 1 35 35 H 1.09006 * 109.47125 * 60.00280 * 19 17 15 36 36 H 1.09001 * 109.46806 * 179.97438 * 19 17 15 37 37 H 1.08998 * 109.47649 * 300.00150 * 19 17 15 38 38 H 1.08998 * 109.47218 * 55.00615 * 20 17 15 39 39 H 1.08993 * 109.47154 * 295.00048 * 20 17 15 40 40 H 1.08005 * 120.00088 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07998 * 119.99975 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1837 -1.4388 -2.2069 7 1 3.6466 -1.8446 -3.0513 8 6 5.5672 -1.5379 -2.1515 9 7 6.2218 -1.0438 -1.1221 10 14 6.5000 -2.3727 -3.5381 11 1 6.2425 -1.6531 -4.8114 12 1 7.9547 -2.3487 -3.2408 13 1 6.0441 -3.7804 -3.6641 14 7 2.0183 -0.6906 1.1961 15 6 2.1471 -0.0183 2.3571 16 8 1.8582 1.1584 2.4117 17 6 2.6489 -0.7289 3.5877 18 1 1.9761 -1.5507 3.8325 19 6 4.0513 -1.2798 3.3221 20 6 2.7011 0.2545 4.7587 21 6 3.0848 -0.4820 6.0163 22 6 4.4167 -0.6084 6.3642 23 6 4.7686 -1.2845 7.5174 24 6 3.7887 -1.8332 8.3233 25 6 2.4571 -1.7109 7.9729 26 6 2.1049 -1.0314 6.8218 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -1.7198 -1.2952 31 1 1.7516 -0.1583 -2.1370 32 1 3.9824 -0.4622 -0.4320 33 1 7.1885 -1.1134 -1.0833 34 1 2.2491 -1.6318 1.1525 35 1 4.7243 -0.4580 3.0773 36 1 4.4145 -1.7934 4.2124 37 1 4.0146 -1.9802 2.4877 38 1 1.7216 0.7139 4.8912 39 1 3.4402 1.0281 4.5508 40 1 5.1823 -0.1797 5.7345 41 1 5.8092 -1.3836 7.7890 42 1 4.0637 -2.3610 9.2246 43 1 1.6917 -2.1434 8.6003 44 1 1.0644 -0.9332 6.5497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754254615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:40 Heat of formation + Delta-G solvation = -40.016713 kcal Electronic energy + Delta-G solvation = -22904.106747 eV Core-core repulsion = 19626.934193 eV Total energy + Delta-G solvation = -3277.172553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 10.93 seconds Orbital eigenvalues (eV) -41.19239 -40.03385 -37.78923 -35.90355 -35.43800 -33.12225 -32.04685 -31.73170 -30.90420 -27.65503 -27.41855 -25.13671 -24.35813 -23.35105 -22.40583 -21.60865 -20.79765 -19.21060 -18.21657 -17.43504 -17.29816 -16.70261 -16.41874 -15.93655 -15.76722 -15.42768 -15.31469 -15.17841 -14.65680 -14.20192 -14.04608 -13.93162 -13.67056 -13.57771 -13.47701 -13.25202 -13.05957 -13.01167 -12.74952 -12.62717 -12.22169 -12.18562 -12.08497 -11.89593 -11.81840 -11.73106 -11.68809 -10.97266 -10.69666 -10.00430 -9.75526 -9.55375 -9.00203 -7.93011 -5.22692 0.48105 0.55155 1.48726 1.51044 1.57121 1.68482 2.28357 2.56897 2.93357 3.40764 3.62202 3.83132 3.87561 3.94253 4.05022 4.15236 4.17677 4.23206 4.31483 4.36442 4.43023 4.53832 4.59909 4.70018 4.79390 4.82963 4.85626 4.88299 4.93065 4.94532 5.10516 5.14283 5.22222 5.24409 5.30129 5.31440 5.51160 5.62440 5.63268 5.67925 5.78912 6.17704 6.27210 6.61900 7.29875 7.34852 8.08229 8.32587 9.29473 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.003719 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.449430 B = 7527.144426 C = 8913.922070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.138 3.862 3 H 0.057 0.943 4 C 0.145 3.855 5 N -0.743 5.743 6 C -0.247 4.247 7 H 0.078 0.922 8 C -0.071 4.071 9 N -0.965 5.965 10 Si 0.972 3.028 11 H -0.281 1.281 12 H -0.298 1.298 13 H -0.276 1.276 14 N -0.707 5.707 15 C 0.515 3.485 16 O -0.585 6.585 17 C -0.091 4.091 18 H 0.118 0.882 19 C -0.137 4.137 20 C -0.054 4.054 21 C -0.086 4.086 22 C -0.129 4.129 23 C -0.128 4.128 24 C -0.130 4.130 25 C -0.123 4.123 26 C -0.126 4.126 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.375 0.625 33 H 0.250 0.750 34 H 0.408 0.592 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 -3.431 17.176 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 H 0.075 0.925 4 C 0.018 3.982 5 N -0.386 5.386 6 C -0.379 4.379 7 H 0.096 0.904 8 C -0.263 4.263 9 N -0.615 5.615 10 Si 0.801 3.199 11 H -0.208 1.208 12 H -0.224 1.224 13 H -0.202 1.202 14 N -0.357 5.357 15 C 0.303 3.697 16 O -0.466 6.466 17 C -0.112 4.112 18 H 0.136 0.864 19 C -0.195 4.195 20 C -0.092 4.092 21 C -0.086 4.086 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.141 4.141 26 C -0.144 4.144 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.207 0.793 33 H 0.059 0.941 34 H 0.244 0.756 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.137 0.863 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.961 -2.690 17.014 19.898 hybrid contribution 1.219 -0.352 -0.775 1.486 sum -8.742 -3.042 16.238 18.691 Atomic orbital electron populations 1.21992 0.92675 1.03113 1.02588 1.21088 0.95370 0.96062 0.84157 0.92516 1.21127 0.84130 0.97964 0.94941 1.42521 1.01793 1.69964 1.24366 1.19585 0.89916 1.28636 0.99764 0.90446 1.25522 0.97451 1.02927 1.00422 1.69816 1.06992 1.52544 1.32187 0.85245 0.77093 0.78642 0.78926 1.20752 1.22416 1.20156 1.45997 1.66109 1.14539 1.09057 1.21079 0.76305 0.86852 0.85463 1.90638 1.52445 1.17557 1.85914 1.21211 0.99259 0.99230 0.91462 0.86441 1.21756 0.94199 1.00861 1.02655 1.20289 1.02624 0.96029 0.90270 1.19850 0.93893 0.98833 0.96055 1.21254 0.95784 1.00005 0.97629 1.21412 1.00583 0.97901 0.94652 1.21467 0.93051 0.99931 1.00379 1.21442 0.97026 0.98778 0.96884 1.21275 0.99556 0.98328 0.95212 0.90824 0.92894 0.90308 0.94196 0.94612 0.79324 0.94124 0.75617 0.93903 0.89975 0.92432 0.90538 0.92029 0.86325 0.84665 0.84056 0.83944 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.48 71.98 0.68 -3.08 16 2 C 0.14 4.64 2.73 44.99 0.12 4.77 16 3 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 4 C 0.15 5.52 5.82 86.38 0.50 6.02 16 5 N -0.74 -36.70 5.43 -343.46 -1.87 -38.56 16 6 C -0.25 -13.45 9.99 84.03 0.84 -12.61 16 7 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 8 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 9 N -0.97 -58.17 13.06 21.65 0.28 -57.88 16 10 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 14 N -0.71 -22.62 4.41 -442.54 -1.95 -24.57 16 15 C 0.52 16.94 7.12 87.66 0.62 17.57 16 16 O -0.58 -23.14 15.58 -3.04 -0.05 -23.19 16 17 C -0.09 -2.35 2.72 -11.54 -0.03 -2.38 16 18 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 19 C -0.14 -3.81 8.66 71.98 0.62 -3.19 16 20 C -0.05 -1.38 4.19 29.85 0.13 -1.25 16 21 C -0.09 -1.91 4.71 -19.86 -0.09 -2.01 16 22 C -0.13 -2.81 7.96 22.27 0.18 -2.63 16 23 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 24 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 26 C -0.13 -2.39 9.70 22.27 0.22 -2.18 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.37 20.08 7.33 -92.70 -0.68 19.40 16 33 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.41 12.31 8.02 -92.70 -0.74 11.57 16 35 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.08 2.00 6.26 -2.39 -0.01 1.98 16 37 H 0.06 1.71 7.56 -2.39 -0.02 1.69 16 38 H 0.08 1.96 7.90 -2.39 -0.02 1.94 16 39 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 40 H 0.12 2.61 8.04 -2.91 -0.02 2.59 16 41 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -67.40 364.23 2.93 -64.46 By element: Atomic # 1 Polarization: 43.07 SS G_CDS: -0.44 Total: 42.63 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 4.93 Total: -10.31 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -3.54 Total: -121.01 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -67.40 2.93 -64.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754254615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.448 kcal (2) G-P(sol) polarization free energy of solvation -67.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.93 seconds