Wall clock time and date at job start Tue Mar 31 2020 06:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47146 * 2 1 4 4 C 1.46899 * 111.00070 * 296.65359 * 3 2 1 5 5 C 1.50698 * 109.46986 * 288.57608 * 4 3 2 6 6 H 1.08002 * 120.00514 * 1.02650 * 5 4 3 7 7 C 1.37883 * 120.00012 * 181.02861 * 5 4 3 8 8 N 1.31511 * 119.99959 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99748 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47460 * 89.99879 * 9 7 5 11 11 H 1.48503 * 109.46650 * 209.99987 * 9 7 5 12 12 H 1.48495 * 109.46861 * 329.99478 * 9 7 5 13 13 C 1.46896 * 111.00017 * 60.60933 * 3 2 1 14 14 C 1.50698 * 109.47472 * 66.04535 * 13 3 2 15 15 O 1.21283 * 119.99941 * 0.02562 * 14 13 3 16 16 N 1.34773 * 120.00513 * 180.02562 * 14 13 3 17 17 C 1.46497 * 120.00495 * 179.97438 * 16 14 13 18 18 C 1.50693 * 109.47289 * 179.97438 * 17 16 14 19 19 C 1.38235 * 120.00159 * 90.00159 * 18 17 16 20 20 C 1.38233 * 120.00438 * 179.72251 * 19 18 17 21 21 C 1.38236 * 119.99923 * 0.25931 * 20 19 18 22 22 C 1.50700 * 120.00040 * 179.97438 * 21 20 19 23 23 C 1.38236 * 120.00029 * 0.02562 * 21 20 19 24 24 C 1.38237 * 120.00437 * 270.23894 * 18 17 16 25 25 H 1.09001 * 109.46805 * 298.23833 * 1 2 3 26 26 H 1.08995 * 109.47138 * 58.23663 * 1 2 3 27 27 H 1.08997 * 109.47138 * 178.23878 * 1 2 3 28 28 H 1.08997 * 109.47022 * 239.99805 * 2 1 3 29 29 H 1.09001 * 109.47349 * 120.00282 * 2 1 3 30 30 H 1.09000 * 109.47037 * 48.57019 * 4 3 2 31 31 H 1.08993 * 109.47357 * 168.57481 * 4 3 2 32 32 H 0.96996 * 119.99929 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.46922 * 306.04555 * 13 3 2 34 34 H 1.09003 * 109.47288 * 186.04934 * 13 3 2 35 35 H 0.97007 * 119.99832 * 359.97438 * 16 14 13 36 36 H 1.09005 * 109.46962 * 60.00027 * 17 16 14 37 37 H 1.08996 * 109.46899 * 300.00321 * 17 16 14 38 38 H 1.08003 * 119.99676 * 0.02562 * 19 18 17 39 39 H 1.07998 * 119.99995 * 180.27700 * 20 19 18 40 40 H 1.08996 * 109.47059 * 89.99882 * 22 21 20 41 41 H 1.08997 * 109.47062 * 210.00610 * 22 21 20 42 42 H 1.09005 * 109.46840 * 329.99804 * 22 21 20 43 43 H 1.07994 * 120.00330 * 179.97438 * 23 21 20 44 44 H 1.08001 * 120.00173 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6151 2.0864 -1.2257 5 6 2.4022 1.5509 -2.3939 6 1 3.1182 0.7564 -2.2440 7 6 2.2082 2.0753 -3.6543 8 7 2.8954 1.6083 -4.6737 9 14 0.9704 3.4501 -3.9135 10 1 1.6445 4.7621 -3.7421 11 1 0.4082 3.3577 -5.2849 12 1 -0.1257 3.3231 -2.9197 13 6 1.5606 2.1057 1.1949 14 6 2.1950 1.5011 2.4209 15 8 2.9552 0.5626 2.3101 16 7 1.9177 2.0033 3.6404 17 6 2.5340 1.4153 4.8323 18 6 2.0632 2.1547 6.0580 19 6 0.9258 1.7366 6.7231 20 6 0.4970 2.4113 7.8508 21 6 1.2027 3.5075 8.3104 22 6 0.7350 4.2435 9.5395 23 6 2.3368 3.9293 7.6420 24 6 2.7658 3.2541 6.5146 25 1 -0.3633 0.4862 0.9054 26 1 -0.3633 0.5409 -0.8737 27 1 -0.3633 -1.0271 -0.0316 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 0.5512 1.9274 -1.4010 31 1 1.8097 3.1531 -1.1149 32 1 2.7593 1.9775 -5.5603 33 1 0.4760 2.0284 1.2714 34 1 1.8456 3.1550 1.1182 35 1 1.3100 2.7543 3.7290 36 1 3.6187 1.4925 4.7561 37 1 2.2490 0.3660 4.9085 38 1 0.3748 0.8797 6.3645 39 1 -0.3891 2.0818 8.3730 40 1 1.1970 3.8044 10.4237 41 1 1.0188 5.2932 9.4644 42 1 -0.3493 4.1652 9.6193 43 1 2.8879 4.7860 8.0008 44 1 3.6521 3.5835 5.9926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:10 Heat of formation + Delta-G solvation = -6.255097 kcal Electronic energy + Delta-G solvation = -22390.225248 eV Core-core repulsion = 19114.516708 eV Total energy + Delta-G solvation = -3275.708540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.06059 -39.28731 -36.81398 -35.09959 -32.81332 -32.47445 -31.26048 -29.98826 -29.20731 -28.04081 -25.65410 -24.23192 -23.04815 -22.78965 -21.11317 -20.52130 -19.30709 -17.13104 -16.62426 -16.31482 -16.03293 -15.64631 -15.48462 -15.14412 -14.65739 -14.32575 -14.12787 -13.99160 -13.74430 -13.41095 -13.15550 -12.92107 -12.77855 -12.44824 -12.32856 -12.29253 -11.93870 -11.58373 -11.40749 -11.38208 -11.28524 -10.96307 -10.64141 -10.53408 -10.12557 -9.88526 -9.42528 -9.25672 -9.23275 -8.97117 -8.82440 -8.52735 -7.26551 -6.00365 -3.96784 0.89826 1.07914 2.96238 3.14681 3.29288 3.36776 3.37125 3.63339 4.37763 4.44228 4.46827 4.59274 4.69708 4.86333 4.88805 5.12215 5.13519 5.19337 5.25992 5.30995 5.40584 5.44305 5.60215 5.62201 5.65958 5.76031 5.77912 5.83040 5.97320 6.05803 6.08538 6.24969 6.30459 6.38584 6.48640 6.50703 6.66465 6.87882 6.97191 7.11286 7.54820 7.66446 7.94859 8.06690 8.53203 8.71133 9.11681 9.60853 11.13066 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027784 B = 0.002759 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.542882 B =10146.489081 C =10443.206229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 N -0.506 5.506 4 C 0.158 3.842 5 C -0.503 4.503 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.030 3.970 14 C 0.515 3.485 15 O -0.515 6.515 16 N -0.737 5.737 17 C 0.163 3.837 18 C -0.109 4.109 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.083 4.083 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.096 4.096 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.076 0.924 30 H -0.002 1.002 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.398 0.602 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 4.870 27.670 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.075 4.075 3 N -0.230 5.230 4 C 0.032 3.968 5 C -0.541 4.541 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.102 4.102 14 C 0.302 3.698 15 O -0.389 6.389 16 N -0.392 5.392 17 C 0.040 3.960 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.142 4.142 21 C -0.083 4.083 22 C -0.173 4.173 23 C -0.141 4.141 24 C -0.115 4.115 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.015 0.985 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.232 0.768 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.765 4.167 27.363 28.272 hybrid contribution -1.838 1.244 -0.223 2.231 sum -7.603 5.411 27.140 28.700 Atomic orbital electron populations 1.22438 1.00006 1.01419 1.01078 1.22185 0.91166 0.90683 1.03482 1.61925 1.58839 1.01922 1.00287 1.20287 0.94857 0.93802 0.87829 1.21015 1.22517 1.20773 0.89816 0.90023 1.24897 0.95865 0.96692 0.95979 1.69893 1.41399 1.42789 0.99908 0.86890 0.82277 0.83162 0.77567 1.20215 1.21254 1.19341 1.22026 0.97884 0.99558 0.90718 1.20926 0.81517 0.83414 0.83981 1.90665 1.34831 1.27472 1.85928 1.46128 1.50104 1.37313 1.05660 1.20099 0.98150 0.96519 0.81251 1.19932 0.96448 0.97128 0.97485 1.21115 0.95648 0.99646 0.95159 1.21042 1.00253 0.95909 0.96968 1.19993 0.95314 0.95973 0.97034 1.20815 1.01525 0.99835 0.95096 1.21054 0.96681 1.00433 0.95949 1.21139 0.99623 0.94598 0.96121 0.94077 0.91843 0.92908 0.89660 0.90559 0.98474 0.96106 0.92726 0.92555 0.88629 0.76828 0.90763 0.90902 0.85788 0.85983 0.91100 0.91466 0.91492 0.85936 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 9.26 37.16 0.34 -3.00 16 2 C 0.05 1.09 5.58 -3.82 -0.02 1.07 16 3 N -0.51 -11.01 4.40 -237.52 -1.04 -12.06 16 4 C 0.16 3.83 3.66 -4.98 -0.02 3.81 16 5 C -0.50 -14.51 9.11 -34.44 -0.31 -14.83 16 6 H 0.08 2.61 7.70 -52.49 -0.40 2.21 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 9 Si 0.87 21.42 27.45 -169.99 -4.67 16.75 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.26 6.57 56.52 0.37 -5.89 16 13 C 0.03 0.50 5.21 -4.98 -0.03 0.48 16 14 C 0.52 8.31 7.55 -10.99 -0.08 8.23 16 15 O -0.52 -10.36 14.31 5.55 0.08 -10.28 16 16 N -0.74 -8.70 5.55 -61.48 -0.34 -9.04 16 17 C 0.16 1.76 5.80 -5.20 -0.03 1.73 16 18 C -0.11 -1.00 5.25 -104.63 -0.55 -1.55 16 19 C -0.10 -0.82 9.70 -39.58 -0.38 -1.20 16 20 C -0.12 -0.95 9.70 -39.58 -0.38 -1.33 16 21 C -0.08 -0.62 5.88 -104.62 -0.62 -1.23 16 22 C -0.12 -0.60 10.01 36.01 0.36 -0.24 16 23 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 24 C -0.10 -0.83 9.70 -39.58 -0.38 -1.21 16 25 H 0.04 0.64 6.38 -51.93 -0.33 0.31 16 26 H 0.06 1.21 6.18 -51.93 -0.32 0.89 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.96 7.15 -51.93 -0.37 1.59 16 29 H 0.08 1.56 5.87 -51.93 -0.30 1.25 16 30 H 0.00 -0.05 5.01 -51.93 -0.26 -0.31 16 31 H 0.02 0.50 7.19 -51.93 -0.37 0.12 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.06 0.85 6.05 -51.93 -0.31 0.53 16 34 H 0.10 1.47 7.87 -51.93 -0.41 1.07 16 35 H 0.40 3.78 8.46 -40.82 -0.35 3.43 16 36 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 42 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -33.73 355.07 -9.25 -42.97 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.82 Total: 2.22 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.59 Total: -8.76 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.61 Total: -48.25 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.73 -9.25 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.719 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds