Wall clock time and date at job start Tue Mar 31 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47146 * 2 1 4 4 C 1.46899 * 111.00070 * 296.65359 * 3 2 1 5 5 C 1.50698 * 109.46986 * 288.57608 * 4 3 2 6 6 H 1.08002 * 120.00514 * 1.02650 * 5 4 3 7 7 C 1.37883 * 120.00012 * 181.02861 * 5 4 3 8 8 N 1.31511 * 119.99959 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99748 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47460 * 89.99879 * 9 7 5 11 11 H 1.48503 * 109.46650 * 209.99987 * 9 7 5 12 12 H 1.48495 * 109.46861 * 329.99478 * 9 7 5 13 13 C 1.46896 * 111.00017 * 60.60933 * 3 2 1 14 14 C 1.50698 * 109.47472 * 66.04535 * 13 3 2 15 15 O 1.21283 * 119.99941 * 0.02562 * 14 13 3 16 16 N 1.34773 * 120.00513 * 180.02562 * 14 13 3 17 17 C 1.46497 * 120.00495 * 179.97438 * 16 14 13 18 18 C 1.50693 * 109.47289 * 179.97438 * 17 16 14 19 19 C 1.38235 * 120.00159 * 90.00159 * 18 17 16 20 20 C 1.38233 * 120.00438 * 179.72251 * 19 18 17 21 21 C 1.38236 * 119.99923 * 0.25931 * 20 19 18 22 22 C 1.50700 * 120.00040 * 179.97438 * 21 20 19 23 23 C 1.38236 * 120.00029 * 0.02562 * 21 20 19 24 24 C 1.38237 * 120.00437 * 270.23894 * 18 17 16 25 25 H 1.09001 * 109.46805 * 298.23833 * 1 2 3 26 26 H 1.08995 * 109.47138 * 58.23663 * 1 2 3 27 27 H 1.08997 * 109.47138 * 178.23878 * 1 2 3 28 28 H 1.08997 * 109.47022 * 239.99805 * 2 1 3 29 29 H 1.09001 * 109.47349 * 120.00282 * 2 1 3 30 30 H 1.09000 * 109.47037 * 48.57019 * 4 3 2 31 31 H 1.08993 * 109.47357 * 168.57481 * 4 3 2 32 32 H 0.96996 * 119.99929 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.46922 * 306.04555 * 13 3 2 34 34 H 1.09003 * 109.47288 * 186.04934 * 13 3 2 35 35 H 0.97007 * 119.99832 * 359.97438 * 16 14 13 36 36 H 1.09005 * 109.46962 * 60.00027 * 17 16 14 37 37 H 1.08996 * 109.46899 * 300.00321 * 17 16 14 38 38 H 1.08003 * 119.99676 * 0.02562 * 19 18 17 39 39 H 1.07998 * 119.99995 * 180.27700 * 20 19 18 40 40 H 1.08996 * 109.47059 * 89.99882 * 22 21 20 41 41 H 1.08997 * 109.47062 * 210.00610 * 22 21 20 42 42 H 1.09005 * 109.46840 * 329.99804 * 22 21 20 43 43 H 1.07994 * 120.00330 * 179.97438 * 23 21 20 44 44 H 1.08001 * 120.00173 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6151 2.0864 -1.2257 5 6 2.4022 1.5509 -2.3939 6 1 3.1182 0.7564 -2.2440 7 6 2.2082 2.0753 -3.6543 8 7 2.8954 1.6083 -4.6737 9 14 0.9704 3.4501 -3.9135 10 1 1.6445 4.7621 -3.7421 11 1 0.4082 3.3577 -5.2849 12 1 -0.1257 3.3231 -2.9197 13 6 1.5606 2.1057 1.1949 14 6 2.1950 1.5011 2.4209 15 8 2.9552 0.5626 2.3101 16 7 1.9177 2.0033 3.6404 17 6 2.5340 1.4153 4.8323 18 6 2.0632 2.1547 6.0580 19 6 0.9258 1.7366 6.7231 20 6 0.4970 2.4113 7.8508 21 6 1.2027 3.5075 8.3104 22 6 0.7350 4.2435 9.5395 23 6 2.3368 3.9293 7.6420 24 6 2.7658 3.2541 6.5146 25 1 -0.3633 0.4862 0.9054 26 1 -0.3633 0.5409 -0.8737 27 1 -0.3633 -1.0271 -0.0316 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 0.5512 1.9274 -1.4010 31 1 1.8097 3.1531 -1.1149 32 1 2.7593 1.9775 -5.5603 33 1 0.4760 2.0284 1.2714 34 1 1.8456 3.1550 1.1182 35 1 1.3100 2.7543 3.7290 36 1 3.6187 1.4925 4.7561 37 1 2.2490 0.3660 4.9085 38 1 0.3748 0.8797 6.3645 39 1 -0.3891 2.0818 8.3730 40 1 1.1970 3.8044 10.4237 41 1 1.0188 5.2932 9.4644 42 1 -0.3493 4.1652 9.6193 43 1 2.8879 4.7860 8.0008 44 1 3.6521 3.5835 5.9926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:09 Heat of formation + Delta-G solvation = -29.564933 kcal Electronic energy + Delta-G solvation = -22391.236038 eV Core-core repulsion = 19114.516708 eV Total energy + Delta-G solvation = -3276.719330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07144 -40.22275 -38.34838 -36.11763 -34.65950 -33.59955 -31.84438 -31.44084 -30.75366 -29.15180 -27.02068 -25.16905 -24.62248 -23.63610 -21.96009 -21.73564 -20.84496 -18.89898 -18.09525 -17.41515 -17.13665 -16.58770 -16.40456 -16.30801 -16.05613 -15.81035 -15.50249 -14.78138 -14.62337 -14.49791 -14.43582 -14.30970 -13.78019 -13.57595 -13.50957 -13.28847 -12.96552 -12.86643 -12.82873 -12.66665 -12.43334 -12.34541 -11.99788 -11.90695 -11.85434 -11.57579 -11.46121 -10.75301 -10.72206 -10.08710 -9.84279 -9.51178 -8.89317 -8.24202 -6.27629 0.26899 0.48518 1.37294 1.40112 1.50434 1.69729 2.17674 2.37861 2.88142 3.08677 3.34963 3.67374 3.88783 3.96023 4.08493 4.13980 4.21501 4.23779 4.28880 4.42777 4.52613 4.55232 4.60258 4.66215 4.70618 4.74602 4.85454 4.86879 4.93096 4.95926 5.09607 5.18271 5.23125 5.28177 5.40263 5.46549 5.48688 5.58147 5.65585 5.69941 5.99885 6.08514 6.35016 6.55292 6.73600 6.78801 7.33105 7.35740 8.93350 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027784 B = 0.002759 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.542882 B =10146.489081 C =10443.206229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 N -0.536 5.536 4 C 0.170 3.830 5 C -0.514 4.514 6 H 0.026 0.974 7 C 0.002 3.998 8 N -0.953 5.953 9 Si 0.953 3.047 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.242 1.242 13 C 0.029 3.971 14 C 0.518 3.482 15 O -0.564 6.564 16 N -0.715 5.715 17 C 0.167 3.833 18 C -0.119 4.119 19 C -0.103 4.103 20 C -0.130 4.130 21 C -0.086 4.086 22 C -0.116 4.116 23 C -0.130 4.130 24 C -0.105 4.105 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.008 0.992 31 H 0.033 0.967 32 H 0.266 0.734 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.413 0.587 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.138 0.862 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.629 7.248 30.195 32.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.070 4.070 3 N -0.260 5.260 4 C 0.043 3.957 5 C -0.552 4.552 6 H 0.044 0.956 7 C -0.195 4.195 8 N -0.594 5.594 9 Si 0.776 3.224 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.165 1.165 13 C -0.102 4.102 14 C 0.304 3.696 15 O -0.442 6.442 16 N -0.369 5.369 17 C 0.044 3.956 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.147 4.147 21 C -0.086 4.086 22 C -0.172 4.172 23 C -0.148 4.148 24 C -0.123 4.123 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.249 0.751 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.156 0.844 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.526 6.570 29.954 31.829 hybrid contribution -0.895 0.439 -0.886 1.334 sum -9.421 7.009 29.067 31.349 Atomic orbital electron populations 1.22309 0.97108 1.02736 1.01635 1.22018 0.93504 0.90129 1.01377 1.61695 1.60485 1.02516 1.01260 1.20033 0.94285 0.94114 0.87232 1.21255 1.22064 1.19593 0.92326 0.95594 1.25946 0.98317 0.99906 0.95296 1.70080 1.43766 1.44944 1.00657 0.85630 0.79698 0.79054 0.78022 1.18893 1.21076 1.16505 1.22119 0.99503 0.99789 0.88770 1.20834 0.80926 0.82835 0.84963 1.90658 1.37107 1.29721 1.86669 1.45920 1.49304 1.36929 1.04703 1.20070 0.97483 0.96536 0.81507 1.19753 0.97321 0.97673 0.97149 1.21249 0.95449 0.99960 0.95483 1.21302 1.00878 0.95838 0.96730 1.20337 0.94925 0.95834 0.97533 1.20865 1.02138 1.00016 0.94198 1.21295 0.97014 1.00866 0.95644 1.21253 0.99783 0.94645 0.96668 0.91378 0.93218 0.91244 0.93825 0.90598 0.97410 0.94853 0.92534 0.89717 0.86814 0.75061 0.91852 0.91429 0.85156 0.84212 0.90336 0.90714 0.90611 0.84374 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.98 9.26 71.98 0.67 -5.31 16 2 C 0.06 2.42 5.58 86.30 0.48 2.90 16 3 N -0.54 -23.22 4.40 -905.39 -3.98 -27.20 16 4 C 0.17 8.08 3.66 85.56 0.31 8.40 16 5 C -0.51 -30.69 9.11 25.60 0.23 -30.46 16 6 H 0.03 1.78 7.70 -2.91 -0.02 1.76 16 7 C 0.00 0.10 5.47 84.66 0.46 0.57 16 8 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 9 Si 0.95 43.66 27.45 68.60 1.88 45.55 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.24 -9.96 6.57 99.48 0.65 -9.31 16 13 C 0.03 0.91 5.21 85.56 0.45 1.36 16 14 C 0.52 16.10 7.55 87.66 0.66 16.76 16 15 O -0.56 -22.92 14.31 -3.04 -0.04 -22.96 16 16 N -0.71 -15.60 5.55 -466.81 -2.59 -18.19 16 17 C 0.17 3.48 5.80 85.63 0.50 3.98 16 18 C -0.12 -1.99 5.25 -19.87 -0.10 -2.10 16 19 C -0.10 -1.53 9.70 22.27 0.22 -1.32 16 20 C -0.13 -1.66 9.70 22.27 0.22 -1.45 16 21 C -0.09 -1.07 5.88 -19.87 -0.12 -1.19 16 22 C -0.12 -0.86 10.01 71.24 0.71 -0.15 16 23 C -0.13 -1.74 9.70 22.27 0.22 -1.53 16 24 C -0.10 -1.64 9.70 22.27 0.22 -1.43 16 25 H 0.07 1.89 6.38 -2.39 -0.02 1.87 16 26 H 0.05 1.80 6.18 -2.39 -0.01 1.78 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.04 2.14 7.15 -2.39 -0.02 2.12 16 29 H 0.08 3.17 5.87 -2.39 -0.01 3.16 16 30 H 0.01 0.38 5.01 -2.39 -0.01 0.37 16 31 H 0.03 1.51 7.19 -2.39 -0.02 1.49 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.09 2.21 6.05 -2.38 -0.01 2.19 16 34 H 0.11 3.15 7.87 -2.39 -0.02 3.13 16 35 H 0.41 6.68 8.46 -92.70 -0.78 5.90 16 36 H 0.06 1.47 8.09 -2.38 -0.02 1.45 16 37 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16 38 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 40 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.07 0.45 8.08 -2.39 -0.02 0.43 16 42 H 0.07 0.44 8.09 -2.38 -0.02 0.42 16 43 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 44 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -76.66 355.07 0.84 -75.82 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.16 Total: 18.86 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.12 Total: -10.96 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -6.27 Total: -106.30 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.04 Total: -22.96 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Total: -76.66 0.84 -75.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.253 kcal (2) G-P(sol) polarization free energy of solvation -76.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds